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Daniel Jacob

I am responsible for the design and/or adaptation of (bio)informatics tools facilitating the capture, storage and use of experimental data in the field of metabolomics and associated metadata. I am also responsible, through scientific monitoring of the field, for the development and/or adaptation of data processing methods (data processing & data mining), for the development and/or deployment of solutions allowing the exploration (data explorer), visualization (data visualization) and data accessibility (open data, FAIR).
32%
Libre accès
19
Documents
Affiliations actuelles
  • 1002364
  • 1157882
  • 1091002
Identifiants chercheurs

Présentation

Domaines de recherche


Compétences

Data mining Data management

Publications

daruvar

Toward interoperable bioscience data

Susanna-Assunta Sansone , Philippe Rocca-Serra , Dawn Field , Eamonn Maguire , Chris Taylor
Nature Genetics, 2012, 44 (2), pp.121-126. ⟨10.1038/ng.1054⟩
Article dans une revue hal-00695792v1

MeRy-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant 1H-NMR metabolomic profiles

H. Ferry-Dumazet , L. Gil , C. Deborde , Annick Moing , Stéphane Bernillon
BMC Plant Biology, 2011, 11:104, pp.10.1186/1471-2229-11-104
Article dans une revue hal-00648167v1
Image document

MeRy-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant NMR metabolomic profiles.

Hélène Ferry-Dumazet , Laurent Gil , Catherine Deborde , Annick Moing , Stéphane Bernillon
BMC Plant Biology, 2011, 11, pp.104. ⟨10.1186/1471-2229-11-104⟩
Article dans une revue hal-00645944v1

An integrative genomics approach for deciphering the complex interactions between ascorbate metabolism and fruit growth and composition in tomato.

Virginie Garcia , Rebecca Stevens , Laurent Gil , Louise Gilbert , Noé Gest
Comptes Rendus Biologies, 2009, 332 (11), pp.1007-21. ⟨10.1016/j.crvi.2009.09.013⟩
Article dans une revue hal-00645936v1

Proton NMR quantitative profiling for quality assessment of greenhouse-grown tomato fruit

Catherine C. Deborde , Mickael M. Maucourt , Pierre Baldet , Stéphane Bernillon , Benoit Biais
Metabolomics, 2009, 5 (2), pp.183-198. ⟨10.1007/s11306-008-0134-2⟩
Article dans une revue hal-02664640v1
Image document

Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas.

Sabine Pereyre , Pascal Sirand-Pugnet , Laure Beven , Alain Charron , Hélène Renaudin
PLoS Genetics, 2009, 5 (10), pp.e1000677. ⟨10.1371/journal.pgen.1000677⟩
Article dans une revue hal-00645937v1

Large-scale identification of human genes implicated in epidermal barrier function.

N. Mattiuzzo , E. Toulza , Mf Galliano , N. Jonca , C. Dossat
Genome Biology, 2007, 8, pp.67-74
Article dans une revue hal-00306571v1
Image document

Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome

Pascal P. Sirand-Pugnet , Carole Lartigue Prat , Marc Marenda , Daniel Jacob , Aurélien Barré
PLoS Genetics, 2007, 3 (5), pp.e75. ⟨10.1371/journal.pgen.0030075⟩
Article dans une revue hal-02663589v1

Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins

Christophe Plomion , Céline C. Lalanne , Stéphane Claverol , Hakim Meddour , Annegret Kohler
Proteomics, 2006, 6 (24), pp.6509-6527. ⟨10.1002/pmic.200600362⟩
Article dans une revue hal-02663888v1

Mery-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant metabolomics profiles obtained by NMR

Hélène Ferry-Dumazet , Laurent Gil , Catherine C. Deborde , Annick Moing , Stéphane Bernillon
4. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, May 2010, Marseille, France
Communication dans un congrès hal-02756823v1

Mery-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant metabolomics profiles obtained by NMR

Hélène Ferry-Dumazet , Laurent Gil , Catherine C. Deborde , Annick Moing , Stéphane Bernillon
Metabolomics 2010, Jun 2010, Amsterdam, Netherlands
Communication dans un congrès hal-02755793v1
Image document

PROTIC workshop: A bioinformatics environment for proteome data validation, analysis and integration

Renaud Flores , Johann J. Joets , Olivier Langella , Benoit B. Valot , Michel M. Zivy
Plant Genomics seminar 2010, Mar 2010, Pont Royal en Provence, France
Communication dans un congrès hal-02758409v1

Mery-B : Base de Données Métabolomiques dédiée au végétal et outils d’intégration, de visualisation et de traitement statistique de profils RMN 1H

Catherine C. Deborde , Hélène Ferry-Dumazet , Cécile Cabasson , Mickael M. Maucourt , Laurent Gil
2. Journée scientifique du réseau RMN aquitain, Apr 2009, Bordeaux, France
Communication dans un congrès hal-02752654v1

Mery-B : management and analysis of plant metabolomics 1H-NMR profiles

Daniel Jacob , Hélène Ferry-Dumazet , Laurent Gil , Catherine C. Deborde , Stéphane Bernillon
Metabomeeting 2009, Jul 2009, Norwich, United Kingdom
Communication dans un congrès hal-02751144v1

Small but dynamic genomes: evidences for massive horizontal gene transfer between ruminant pathogenic mycoplasmas

Pascal P. Sirand-Pugnet , Marc Marenda , Daniel Jacob , Aurélien Barré , Valérie Barbe
Genomes 2008, Apr 2008, Paris, France
Communication dans un congrès hal-02751198v1

Insights into genome plasticity of the wine-making bacterium Oenococcus oeni strain ATCC BAA-1163 by decryption of its whole genome.

Elisabeth Bon , Cosette Granvalet , Fabienne Remize , Diliana Dimova , Patrick Lucas
9th Symposium on Lactic Acid Bacteria, Sep 2008, Egmond aan Zee, Netherlands. pp.A047
Communication dans un congrès inria-00340073v1

The complete genome sequence of the human urogenital mycoplasma, Mycoplasma hominis

Sabine Pereyre , Philippe Avenaud , Alain Charron , Pascal P. Sirand-Pugnet , Daniel Jacob
16. International congress of the International Organization for Mycoplasmology, Jul 2006, Cambridge, United Kingdom
Communication dans un congrès hal-02756026v1

MétaboP: a French initiative supported by Génoplante for the development of analytical and bioinformatic tools for plant metabolomics

Annick Moing , Graham Noctor , Catherine C. Deborde , Mickael M. Maucourt , Christel Renaud
4. International conference, Apr 2006, Reading, United Kingdom
Communication dans un congrès hal-02754317v1

Un outil informatique générique pour le stockage et le data-mining de données de métabolome de plantes

Hélène Ferry-Dumazet , Daniel Jacob , Aurélien Barré , Cécile Cabasson , Christel Renaud
Premières journées scientifiques, Dec 2005, Toulouse, France
Communication dans un congrès hal-02759485v1