CV Daniel Jacob

Maria Urrutia, Melisande Blein-Nicolas, Sylvain Prigent, Stéphane Bernillon, Catherine Deborde, et al.. Maize metabolome and proteome responses to controlled cold stress partly mimic early‐sowing effects in the field and differ from those of Arabidopsis. Plant, Cell and Environment, Wiley, 2021, Online ahead of print, ⟨10.1111/pce.13993⟩. ⟨hal-03107184⟩

Léa Roch, Sylvain Prigent, Holger Klose, Coffi-Belmys Cakpo, Bertrand Beauvoit, et al.. Biomass composition explains fruit relative growth rate and discriminates climacteric from non-climacteric species. Journal of Experimental Botany, Oxford University Press (OUP), 2020, ⟨10.1093/jxb/eraa302⟩. ⟨hal-02904041⟩

Annick Moing, J. William Allwood, Asaph Aharoni, John Baker, Michael Beale, et al.. Comparative Metabolomics and Molecular Phylogenetics of Melon (Cucumis melo, Cucurbitaceae) Biodiversity. Metabolites, MDPI, 2020, 10 (3), pp.121. ⟨10.3390/metabo10030121⟩. ⟨hal-02533195⟩

Daniel Jacob, Romain David, Sophie Aubin, Yves Gibon. Making experimental data tables in the life sciences more FAIR: a pragmatic approach. GigaScience, BioMed Central, 2020, 9 (12), pp.giaa144. ⟨10.1093/gigascience/giaa144⟩. ⟨hal-02883355v4⟩

Romain David, Laurence Mabile, Alison Specht, Sarah Stryeck, Mogens Thomsen, et al.. FAIRness Literacy: The Achilles’ Heel of Applying FAIR Principles. CODATA Data Science Journal, Committee on Data for Science and Technology (CODATA), 2020, 19 (32), pp.1-11. ⟨10.5334/dsj-2020-032⟩. ⟨hal-02483307v2⟩

Simon Roques, Catherine Deborde, Laurence Guimas, Yann Marchand, Nadege Richard, et al.. Integrative Metabolomics for Assessing the Effect of Insect (Hermetia illucens) Protein Extract on Rainbow Trout Metabolism. Metabolites, MDPI, 2020, 10 (3), pp.83. ⟨10.3390/metabo10030083⟩. ⟨hal-02570723⟩

Arnab Dey, Benoît Charrier, Estelle Martineau, Catherine Deborde, Elodie Gandriau, et al.. Hyperpolarized NMR Metabolomics at Natural 13 C Abundance. Analytical Chemistry, American Chemical Society, 2020, 92 (22), pp.14867-14871. ⟨10.1021/acs.analchem.0c03510⟩. ⟨hal-03035414⟩

Martine Lemaire-Chamley, Fabien Mounet, Catherine Deborde, Mickael Maucourt, Daniel Jacob, et al.. NMR-Based Tissular and Developmental Metabolomics of Tomato Fruit.. Metabolites, MDPI, 2019, 9 (5), ⟨10.3390/metabo9050093⟩. ⟨hal-02621416⟩

Catherine Deborde, Jean-Xavier Fontaine, Daniel Jacob, Adolfo Botana, Valerie Nicaise, et al.. Optimizing 1D 1H-NMR profiling of plant samples for high throughput analysis: extract preparation, standardization, automation and spectra processing. Metabolomics, Springer Verlag, 2019, 15 (3), pp.1-12. ⟨10.1007/s11306-019-1488-3⟩. ⟨hal-02622523⟩

Kristian Peters, James Bradbury, Sven Bergmann, Marco Capuccini, Marta Cascante, et al.. PhenoMeNal: processing and analysis of metabolomics data in the cloud. GigaScience, BioMed Central, 2019, 8 (2), 12 p. ⟨10.1093/gigascience/giy149⟩. ⟨hal-02627233⟩

Olivier Fernandez, Maria Urrutia, Thierry Berton, Stéphane Bernillon, Catherine Deborde, et al.. Metabolomic characterization of sunflower leaf allows discriminating genotype groups or stress levels with a minimal set of metabolic markers. Metabolomics, Springer Verlag, 2019, 15 (4), pp.56. ⟨10.1007/s11306-019-1515-4⟩. ⟨hal-02487236⟩

Francois Joël Gatesoupe, Benoit Fauconneau, Catherine Deborde, Blandine Madji Hounoum, Daniel Jacob, et al.. Intestinal microbiota in rainbow trout, Oncorhynchus mykiss, fed diets with different levels of fish-based and plant ingredients: A correlative approach with some plasma metabolites. Aquaculture Nutrition, Wiley, 2018, 24 (5), pp.1563-1576. ⟨10.1111/anu.12793⟩. ⟨hal-01901326⟩

Stéphane Bernillon, Mickael Maucourt, Catherine Deborde, Sylvain Chereau, Daniel Jacob, et al.. Characterization of GMO or glyphosate effects on the composition of maize grain and maize-based diet for rat feeding. Metabolomics, Springer Verlag, 2018, 14 (36), pp.1-12. ⟨10.1007/s11306-018-1329-9⟩. ⟨hal-02624451⟩

Nadia Lamari, Vanessa Zhendre, Maria Urrutia, Stéphane Bernillon, Mickael Maucourt, et al.. Metabotyping of 30 maize hybrids under early-sowing conditions reveals potential marker-metabolites for breeding. Metabolomics, Springer Verlag, In press, 14 (10), pp.132. ⟨10.1007/s11306-018-1427-8⟩. ⟨hal-02539641⟩

Daniel Schober, Daniel Jacob, Michael Wilson, Joseph A Cruz, Ana Marcu, et al.. nmrML: a community supported open data standard for the description, storage, and exchange of NMR data.. Analytical Chemistry, American Chemical Society, 2018, 90 (1), pp.649-656. ⟨10.1021/acs.analchem.7b02795⟩. ⟨hal-02621139⟩

Catherine Deborde, Annick Moing, Léa Roch, Daniel Jacob, Dominique Rolin, et al.. Plant metabolism as studied by NMR spectroscopy. Progress in Nuclear Magnetic Resonance Spectroscopy, Elsevier, 2017, 102-103, pp.61-97. ⟨10.1016/j.pnmrs.2017.05.001⟩. ⟨hal-01602524⟩

Daniel Jacob, Catherine Deborde, Marie Lefebvre, Mickael Maucourt, Annick Moing. NMRProcFlow: a graphical and interactive tool dedicated to 1D spectra processing for NMR-based metabolomics. Metabolomics, Springer Verlag, 2017, 13 (4), pp.36. ⟨10.1007/s11306-017-1178-y⟩. ⟨hal-01606304⟩

Aurélien Bornet, Mickael Maucourt, Catherine Deborde, Daniel Jacob, Jonas Milani, et al.. Highly Repeatable Dissolution Dynamic Nuclear Polarization for Heteronuclear NMR Metabolomics. Analytical Chemistry, American Chemical Society, 2016, 88 (12), pp.6179-6183. ⟨10.1021/acs.analchem.6b01094⟩. ⟨hal-01366193⟩

Reza Salek, Steffen Neumann, Daniel Schober, Jan Hummel, Kenny Billiau, et al.. Erratum to: COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access. Metabolomics, Springer Verlag, 2015, 11 (6), pp.1598-1599. ⟨10.1007/s11306-015-0822-7⟩. ⟨hal-02630736⟩

Reza Salek, Steffen Neumann, Daniel Schober, Jan Hummel, Kenny Billiau, et al.. COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access. Metabolomics, Springer Verlag, 2015, 11 (6), pp.Journal no. 11306. ⟨10.1007/s11306-015-0810-y⟩. ⟨hal-01165673⟩

Camille Bénard, Stéphane Bernillon, Benoit Biais, Sonia Osorio, Mickael Maucourt, et al.. Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships.. Journal of Experimental Botany, Oxford University Press (OUP), 2015, 66 (11), pp.3391-404. ⟨10.1093/jxb/erv151⟩. ⟨hal-02641303⟩

Jean-Charles Martin, Mathieu Maillot, Gerard Mazerolles, Alexandre Verdu, Bernard Lyan, et al.. Can we Trust Untargeted Metabolomics: Results of the Metabo-ring Initiative, a Large-scale Multi-instruments Inter-laboratoire Study. Metabolomics, Springer Verlag, 2015, 11 (4), pp.807-821. ⟨10.1007/s11306-014-0740-0⟩. ⟨hal-01123343⟩

Franck Giacomoni, Gildas Le Corguillé, Misharl Monsoor, Marion Landi, Pierre Pericard, et al.. Workflow4Metabolomics: A collaborative research infrastructure for computational metabolomics. Bioinformatics, Oxford University Press (OUP), 2015, 31 (9), pp.1493-1495. ⟨10.1093/bioinformatics/btu813⟩. ⟨hal-01123263⟩

Laura Pascual-Banuls, Jiaxin Xu, Benoit Biais, Mickael Maucourt, Patricia Ballias, et al.. Deciphering genetic diversity and inheritance of tomato fruit weight and composition through a systems biology approach. Journal of Experimental Botany, Oxford University Press (OUP), 2013, 64 (18), pp.1-16. ⟨10.1093/jxb/ert349⟩. ⟨hal-01208665⟩

Daniel Jacob, Catherine Deborde, Annick Moing. An efficient spectra processing method for metabolite identification from (1)H-NMR metabolomics data.. Analytical and Bioanalytical Chemistry, Springer Verlag, 2013, 405 (15), pp.5049-61. ⟨10.1007/s00216-013-6852-y⟩. ⟨hal-02648547⟩

Olivier Langella, Benoit Valot, Daniel Jacob, Thierry Balliau, Raphaël-Gauthier Flores, et al.. Management and dissemination of MS proteomic data with PROTICdb: Example of a quantitative comparison between methods of protein extraction. Proteomics, Wiley-VCH Verlag, 2013, 13 (9), pp.1457-1466. ⟨10.1002/pmic.201200564⟩. ⟨hal-02651260⟩

Lucía Manso-Silván, Florence Tardy, Eric Baranowski, Aurélien Barré, Alain Blanchard, et al.. Draft Genome Sequences of Mycoplasma alkalescens, Mycoplasma arginini, and Mycoplasma bovigenitalium, Three Species with Equivocal Pathogenic Status for Cattle. Genome Announcements, American Society for Microbiology, 2013, 1 (3), pp.e00348-13. ⟨10.1128/genomeA.00348-13⟩. ⟨hal-00907454⟩

Emilie Dordet-Frisoni, Eric Baranowski, Aurélien Barré, Alain Blanchard, Marc Breton, et al.. Draft Genome Sequences of Mycoplasma auris and Mycoplasma yeatsii, Two Species of the Ear Canal of Caprinae. Genome Announcements, American Society for Microbiology, 2013, 1 (3), epub ahead of print. ⟨10.1128/genomeA.00280-13⟩. ⟨hal-00907449⟩

Virginie Dupuy, Pascal Sirand-Pugnet, Eric Baranowski, Aurélien Barré, Marc Breton, et al.. Complete Genome Sequence of Mycoplasma putrefaciens Strain 9231, One of the Agents of Contagious Agalactia in Goats. Genome Announcements, American Society for Microbiology, 2013, 1 (3), pp.e00354-13. ⟨10.1128/genomeA.00354-13⟩. ⟨hal-00907450⟩

Dan M. Bolser, Pierre-Yves Chibon, Sungsam Gong, Daniel Jacob, Victoria Fabia Dominguez del Angel, et al.. MetaBase-the wiki-database of biological databases. Nucleic Acids Research, Oxford University Press, 2012, 40 (1), pp.D1250-D1254. ⟨10.1093/nar/gkr1099⟩. ⟨hal-02648461⟩

Susanna-Assunta Sansone, Philippe Rocca-Serra, Dawn Field, Eamonn Maguire, Chris Taylor, et al.. Toward interoperable bioscience data. Nature Genetics, Nature Publishing Group, 2012, 44 (2), pp.121-126. ⟨10.1038/ng.1054⟩. ⟨hal-00695792⟩

Hélène Ferry-Dumazet, Laurent Gil, Catherine Deborde, Annick Moing, Stéphane Bernillon, et al.. MeRy-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant NMR metabolomic profiles.. BMC Plant Biology, BioMed Central, 2011, 11, pp.104. ⟨10.1186/1471-2229-11-104⟩. ⟨hal-00645944⟩

François Thiaucourt, Lucía Manso-Silván, Woubit Salah, Valérie Barbe, Benoit Vacherie, et al.. Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective. BMC Genomics, BioMed Central, 2011, 12, pp.114 : 1-19. ⟨10.1186/1471-2164-12-114⟩. ⟨hal-02643828⟩

H. Ferry-Dumazet, L. Gil, C. Deborde, A. Moing, S. Bernillon, et al.. MeRy-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant 1H-NMR metabolomic profiles. BMC Plant Biology, BioMed Central, 2011, 11:104, pp.10.1186/1471-2229-11-104. ⟨hal-00648167⟩

Xavier Nouvel, Pascal Sirand-Pugnet, Marc S. Marenda, Valérie Barbe, Sophie Mangenot, et al.. Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity. BMC Genomics, BioMed Central, 2010, 11 (86), 19 p. ⟨10.1186/1471-2164-11-86⟩. ⟨hal-02660112⟩

Virginie Garcia, Rebecca Stevens, Laurent Gil, Louise Gilbert, Noé Gest, et al.. An integrative genomics approach for deciphering the complex interactions between ascorbate metabolism and fruit growth and composition in tomato.. Comptes Rendus Biologies, Elsevier Masson, 2009, 332 (11), pp.1007-21. ⟨10.1016/j.crvi.2009.09.013⟩. ⟨hal-00645936⟩

Benoit Biais, William Allwood, Catherine Deborde, Yun Xu, Mickael Maucourt, et al.. 1H NMR, GC−EI-TOFMS, and data set correlation for fruit metabolomics: application to spatial metabolite analysis in melon. Analytical Chemistry, American Chemical Society, 2009, 81 (8), pp.2884-2894. ⟨10.1021/ac9001996⟩. ⟨hal-02662211⟩

Catherine Deborde, Mickael Maucourt, Pierre Baldet, Stéphane Bernillon, Benoit Biais, et al.. Proton NMR quantitative profiling for quality assessment of greenhouse-grown tomato fruit. Metabolomics, Springer Verlag, 2009, 5 (2), pp.183-198. ⟨10.1007/s11306-008-0134-2⟩. ⟨hal-02664640⟩

Sabine Pereyre, Pascal Sirand-Pugnet, Laure Beven, Alain Charron, Hélène Renaudin, et al.. Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas.. PLoS Genetics, Public Library of Science, 2009, 5 (10), pp.e1000677. ⟨10.1371/journal.pgen.1000677⟩. ⟨hal-00645937⟩

N. Mattiuzzo, E. Toulza, Mf Galliano, N. Jonca, C. Dossat, et al.. Large-scale identification of human genes implicated in epidermal barrier function.. Genome Biology, BioMed Central, 2007, 8, pp.67-74. ⟨hal-00306571⟩

Pascal Sirand-Pugnet, Carole Lartigue Prat, Marc Marenda, Daniel Jacob, Aurélien Barré, et al.. Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome. PLoS Genetics, Public Library of Science, 2007, 3 (5), pp.e75. ⟨10.1371/journal.pgen.0030075⟩. ⟨hal-02663589⟩

Pascal Sirand-Pugnet, Carole Lartigue, Marc Marenda, Daniel Jacob, Aurélien Barré, et al.. Being Pathogenic, Plastic, and Sexual while Living with a Nearly Minimal Bacterial Genome. PLoS Genetics, Public Library of Science, 2007, 3, pp.e75. ⟨hal-00306574⟩

Geneviève Gesan-Guiziou, Nicolas Alvarez, Daniel Jacob, Georges Daufin. Cleaning-in-place coupled with membrane regeneration for re-using caustic soda solutions. Separation and Purification Technology, Elsevier, 2007, 54 (3), pp.329-339. ⟨10.1016/j.seppur.2006.10.007⟩. ⟨hal-01453993⟩

Christophe Plomion, Céline Lalanne, Stéphane Claverol, Hakim Meddour, Annegret Kohler, et al.. Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins. Proteomics, Wiley-VCH Verlag, 2006, 6 (24), pp.6509-6527. ⟨10.1002/pmic.200600362⟩. ⟨hal-02663888⟩

Guillaume Meurice, Daniel Jacob, Catherine Deborde, Stéphane Chaillou, Annette Rouault, et al.. Whole genome sequencing project of a dairy Propionibacterium freudenreichii subsp. shermanii genome: progress and first bioinformatic analysis. Le Lait, INRA Editions, 2004, 84 (1-2), pp.15-24. ⟨10.1051/lait:2003041⟩. ⟨hal-00895526⟩

C. Daviau, A. Pierre, Marie-Hélène Famelart, H. Goudedranche, D. Jacob, et al.. Residual amount of water in a draining curd of camembert cheese and physicochemical characteristics of the drained curd as modified by the pH at renneting, the casein concentration and the ionic strenght of milk. Lait, Elsevier, 2000, 80, pp.555-571. ⟨hal-02693765⟩

C. Daviau, A. Pierre, Marie-Hélène Famelart, H. Goudedranche, D. Jacob, et al.. Characterization of whey drainage kinetics during soft cheese manufacture in relation with the physicochemical and technological factors, pH and renneting, casein concentration and ionic strength of milk. Lait, Elsevier, 2000, 80 (4), pp.417-432. ⟨hal-02693972⟩

C. Daviau, A. Pierre, M.H. Famelard, H. Goudedranche, D. Jacob, et al.. Whey drainage during soft cheeses manufacture and properties of drained curd as modified by casein concentration, whey protein to casein ratio, and pasteurisation of milk. Lait, Elsevier, 2000, 80, pp.573-587. ⟨hal-02696518⟩

Célina Daviau, Alice Pierre, Marie-Hélène Famelart, Henri Goudédranche, Daniel Jacob, et al.. Whey drainage during soft cheese manufacture and properties of drained curd as modified by casein concentration, whey protein to casein ratio, and pasteurisation of milk. Lait, Elsevier, 2000, 80 (6), pp.573 - 587. ⟨10.1051/lait:2000145⟩. ⟨hal-02263108⟩

Célina Daviau, Alice Pierre, Marie-Hélène Famelart, Henri Goudédranche, Daniel Jacob, et al.. Characterisation of whey drainage kinetics during soft cheese manufacture in relation with the physicochemical and technological factors, pH at renneting, casein concentration and ionic strength of milk. Le Lait, INRA Editions, 2000, 80 (4), pp.417-432. ⟨10.1051/lait:2000135⟩. ⟨hal-00895428⟩

Célina Daviau, Alice Pierre, Marie-Hélène Famelart, Henri Goudédranche, Daniel Jacob, et al.. Whey drainage during soft cheese manufacture and properties of drained curd as modified by casein concentration, whey protein to casein ratio, and pasteurisation of milk. Le Lait, INRA Editions, 2000, 80 (6), pp.573-587. ⟨10.1051/lait:2000145⟩. ⟨hal-00895445⟩

Célina Daviau, Alice Pierre, Marie-Hélène Famelart, Henri Goudédranche, Daniel Jacob, et al.. Residual amount of water in a draining curd of camembert cheese and physicochemical characteristics of the drained curd as modified by the pH at renneting, the casein concentration and the ionic strength of milk. Le Lait, INRA Editions, 2000, 80 (6), pp.555-571. ⟨10.1051/lait:2000103⟩. ⟨hal-00895451⟩

E. Le Guenic, Daniel Mollé, Joëlle Leonil, G. Henry, D. Jacob, et al.. Mechanism of bovine trypsin inhibition by beta-casein N-terminal fragment. International Dairy Journal, Elsevier, 1998, 8 (5-6), pp.580. ⟨hal-02687761⟩

J.L. Chen, Bertrand Beauvoit, Sophie Colombie, Léa Roch, Coffi Belmys Cakpo, et al.. An integrated fruit model toolkit: combining fruit biophysical processes with central carbon metabolism. Symposium on Advanced Technologies and Management for Innovative Greenhouses: GreenSys2019, Jun 2019, Angers, France. pp.401-410, ⟨10.17660/ActaHortic.2020.1296.52⟩. ⟨hal-03125090⟩

Catherine Deborde, Daniel Jacob, J.X. Fontaine, R. Molinie, Léa Roch, et al.. An overview of NMR applications in metabolite profiling of small molecules for plant metabolism studies. 2. International Plant Spectroscopy Conference (IPSC), Mar 2019, Berlin, Germany. ⟨hal-02786819⟩

Catherine Deborde, Daniel Jacob, Simon Roques, Léa Roch, Anaïs Clave, et al.. NMR-based metabolomics at Bordeaux Metabolome Facility: 4 short stories. A Franco-Israeli Symposium in Magnetic Resonance, Jan 2019, Rehovot, Israel. ⟨hal-02786826⟩

Daniel Jacob. FAIR principles, an new opportunity to improve the data lifecycle. ado2019 : journée thématique sur les autorités de données, Pascal Dayre - CNRS ENSEEIHT-IRIT, Apr 2019, Toulouse, France. ⟨hal-02070883⟩

Catherine Deborde, Blandine Madji Hounoum, Daniel Jacob, Mickael Maucourt, Simon Roques, et al.. NMR-based metabolomics workflow for quality and effect assessment of alternative plant-based diets in rainbow trout.. 11èmes JS du Réseau Francophone de Métabolomique et Fluxomique, May 2018, Liège, Belgium. ⟨hal-03058513⟩

Cecile Cabasson, Sophie Colombie, Bertrand Beauvoit, Christine Nazaret, Camille Benard, et al.. Integrative and predictive biology outside the plant: linking computational tools to fleshy fruit systems. Colloque Biologie synthétique et systémique, BioSynSys, Jun 2016, Bordeaux, France. ⟨hal-02739719⟩

Maria Urrutia Rosauro, B. Bernillon, M. Maucourt, Catherine Deborde, Daniel Jacob, et al.. Leaf marker metabolites for low nitrogen stress in maize. Plant Biology Europe EPSO/FESPB 2016, Jun 2016, Prague, Czech Republic. ⟨hal-01605806⟩

Catherine Deborde, Annick Moing, Valentin Joubert, Blandine Madji Hounoum, Daniel Jacob, et al.. Development of Metabolomics Approaches for Quality Assessment of Plant-Based Diet in Rainbow Trout. Meeting Abstracts, 2015, Rotterdam, NLD, Unknown Region. pp.252-253. ⟨hal-02139685⟩

Catherine Deborde, Annick Moing, Valentin Joubert, Blandine Madji Hounoum, Daniel Jacob, et al.. Development of metabolomics approaches for quality assessment of plant-based diet in rainbow trout. Aquaculture Europe 2015, European Aquaculture Society (EAS). BEL., Oct 2015, Rotterdam, Netherlands. ⟨hal-02740877⟩

Nils Paulhe, Pierrick Roger, Marie-Françoise Olivier, Marie Lefebvre, Christophe Duperier, et al.. PeakForest: a spectral reference database made from metabolomic experts for metabolomic analyses. 9. Journées scientifiques du RFMF, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., Jun 2015, Lille, France. ⟨hal-02742965⟩

Camille Bénard, Stéphane Bernillon, Benoit Biais, Sonia Osorio-Algar, Mickael Maucourt, et al.. Using developmental and diurnal compositional changes of tomato to study metabolism. 8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p. ⟨hal-02793195⟩

Daniel Schober, Michael Wilson, Daniel Jacob, Annick Moing, Gerhard Mayer, et al.. Ontology usage in Omics Standards Initiatives: Pros and Cons of enriching XML data formats with controlled vocabulary terms. ODLS 2014 – Ontologies and Data in Life Sciences, Aug 2014, Freibourg, Germany. ⟨hal-02797986⟩

Dominique Rolin, Bertrand Beauvoit, Stéphane Bernillon, Camille Bénard, Patricia Ballias, et al.. La métabolomique : un outil de la génomique fonctionnelle au service de la biologie des systèmes. 8e Congrès Jeunes Chercheurs de la SFBV, Société Française de Biologie Végétale (SFBV). FRA., Jun 2014, Tours, France. 1 p. ⟨hal-02801036⟩

Celine Bournonville, Carine Ferrand, Daniel Just, Virginie Garcia, Daniel Jacob, et al.. Deciphering ascorbic acid regulation in tomato fruit ripening. 18. EUCARPIA Meeting of the Tomato Working Group, Apr 2014, Avignon, France. 1 p. ⟨hal-02800985⟩

Camille Benard, Stéphane Bernillon, Sonia Osorio-Algar, Mickael Maucourt, Benoit Biais, et al.. Diurnal compositional changes of tomato fruit and leaf. Metabolomics 2013, Jul 2013, Glasgow, United Kingdom. 1 p. ⟨hal-02803658⟩

Daniel Jacob, Catherine Deborde, Annick Moing. ERVA: a novel method of binning, allowing chemical information to be highlighted, from 1H-NMR metabolics data. 7. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Jun 2013, Amiens, France. 1 p. ⟨hal-02805015⟩

Dominique Rolin, Alice Agasse, Justine Bertrand-Michel, R. Cole, B. Colsch, et al.. MetaboHUB: une infrastructure nationale au service de la métabolomique. Séance thématique "La métabolomique : son application en recherche pharmaceutique et diagnostique", Académie Nationale de Pharmacie. FRA., Feb 2013, Paris, France. ⟨hal-01002248⟩

Dominique Rolin, Alice Agasse, Justine Bertrand-Michel, R. Cole, B. Colsch, et al.. MetaboHUB: a national infrastructure dedicated to metabolomics and fluxomics. 7. Journées scientifiques du Réseau Français de Métabolomique et de Fluxomique (RFMF), Jun 2013, Amiens, France. ⟨hal-01002241⟩

Dominique Rolin, Alice Agasse, Justine Bertrand-Michel, R. Cole, Sophie Colombie, et al.. MetaboHUB: a french infrastructure dedicated to metabolomics and fluxomics. Metabolomics 2013 - 9. Annual conference of the Metabolomics Society, Jul 2013, Glasgow, United Kingdom. ⟨hal-01002247⟩

Daniel Jacob. Standardisation et stockage des données numériques de MetaboHub dans le contexte des initiatives européennes. 1. Journée scientifique de MétaboHUB, Oct 2012, Villevave d'Ornon, France. ⟨hal-02802257⟩

Daniel Jacob. WP3 Bioinformatics Framework. 1. Journée scientifique de MétaboHUB, Oct 2012. ⟨hal-02802614⟩

Alexandre Verdu, Bernard Lyan, Carole Migne, Catherine Defoort, Cecile Canlet, et al.. Can we trust untargeted metabolomics: results of the metabo-ring study. 2. African-European Conference on Chemometrics - Afrodata 2012, Nov 2012, Stellenbosch, South Africa. ⟨hal-01595486⟩

Alexandre Verdu, Bernard Lyan, Carole Migne, Catherine Defoort, Cecile Canlet, et al.. Peut-on faire confiance à la métabolomique: résultats de l'initiative MetaboRing. 6. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique (RFMF), May 2012, Nantes, France. ⟨hal-01594993⟩

Daniel Jacob, Catherine Deborde, Stéphane Bernillon, Annick Moing. Développement d'outils informatiques pour le traitement et l'analyse des données en RMN-1H, dans un contexte d'expériences métabolomiques. 5. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Labo/service de l'auteur, Ville service., May 2011, Paris, France. ⟨hal-02747402⟩

Catherine Deborde, Stéphane Bernillon, Mickael Maucourt, Cécile Cabasson, Benoit Biais, et al.. Tools and applications in plant metabolomics at Bordeaux Metabolome Fluxome Facility (PMFB; http://www.bordeaux.inra.fr/umr619/NMR.htm). 5. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Labo/service de l'auteur, Ville service., May 2011, Paris, France. ⟨hal-02749839⟩

Hélène Ferry-Dumazet, Laurent Gil, Catherine Deborde, Annick Moing, Stéphane Bernillon, et al.. Mery-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant metabolomics profiles obtained by NMR. Metabolomics 2010, Jun 2010, Amsterdam, Netherlands. ⟨hal-02755793⟩

Catherine Deborde, Stéphane Bernillon, Mickael Maucourt, Cécile Cabasson, Isabelle Quintana, et al.. Plant metabolomics at Bordeaux Metabolome-Fluxome Facility. Tools and applications at PMFB. 4. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, May 2010, Marseille, France. ⟨hal-02756773⟩

Hélène Ferry-Dumazet, Laurent Gil, Catherine Deborde, Annick Moing, Stéphane Bernillon, et al.. Mery-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant metabolomics profiles obtained by NMR. 4. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, May 2010, Marseille, France. ⟨hal-02756823⟩

Catherine Deborde, Stéphane Bernillon, Mickael Maucourt, Cécile Cabasson, Patricia Ballias, et al.. Applications and tools in plant metabolomics at Bordeaux Metabolome-Fluxome Facility. Metabolomics 2010, Jun 2010, Amsterdam, Netherlands. ⟨hal-02757642⟩

Renaud Flores, Johann Joets, Olivier Langella, Benoit Valot, Michel Zivy, et al.. PROTIC workshop: A bioinformatics environment for proteome data validation, analysis and integration. Plant Genomics seminar 2010, Mar 2010, Pont Royal en Provence, France. ⟨hal-02758409⟩

Daniel Jacob, Hélène Ferry-Dumazet, Laurent Gil, Catherine Deborde, Stéphane Bernillon, et al.. Mery-B : management and analysis of plant metabolomics 1H-NMR profiles. Metabomeeting 2009, Jul 2009, Norwich, United Kingdom. ⟨hal-02751144⟩

Catherine Deborde, Hélène Ferry-Dumazet, Cécile Cabasson, Mickael Maucourt, Laurent Gil, et al.. Mery-B : Base de Données Métabolomiques dédiée au végétal et outils d’intégration, de visualisation et de traitement statistique de profils RMN 1H. 2. Journée scientifique du réseau RMN aquitain, Apr 2009, Bordeaux, France. ⟨hal-02752654⟩

Stéphane Bernillon, Catherine Deborde, Mickael Maucourt, Benoit Biais, Karine Pardon, et al.. Tools and applications in plant metabolomics at Bordeaux metabolome-fluxome facility (PMFB). Metabomeeting 2009, Jul 2009, Norwich, United Kingdom. ⟨hal-02753447⟩

William Allwood, Benoit Biais, Catherine Deborde, Yun Xu, Mickael Maucourt, et al.. Direct correlation of 1H-NMR and GC-EI-TOF-MS profiling data reveals significant spatial localisations and metabolite gradients in Charentais melon fr. Metabomeeting 2009, Jul 2009, Norwich, United Kingdom. ⟨hal-02755485⟩

Sabine Pereyre, Pascal Sirand-Pugnet, A. Barre, A. Charron, P. Avenaud, et al.. The genome sequence of Mycoplasma hominis and comparison with the minimal bacterial genomes of the human pathogens, M. genitalium and Ureaplasma parvum. 108. General meeting of the American Society for Microbiology, Jun 2008, Boston, United States. ⟨hal-02752888⟩

Pascal Sirand-Pugnet, Marc Marenda, Daniel Jacob, Aurélien Barré, Valérie Barbe, et al.. Small but dynamic genomes: evidences for massive horizontal gene transfer between ruminant pathogenic mycoplasmas. Genomes 2008, Apr 2008, Paris, France. ⟨hal-02751198⟩

Elisabeth Bon, Cosette Granvalet, Fabienne Remize, Diliana Dimova, Patrick Lucas, et al.. Insights into genome plasticity of the wine-making bacterium Oenococcus oeni strain ATCC BAA-1163 by decryption of its whole genome.. 9th Symposium on Lactic Acid Bacteria, Sep 2008, Egmond aan Zee, Netherlands. pp.A047. ⟨inria-00340073⟩

Pascal Sirand-Pugnet, Christine Citti, A Barre, D Jacob, Alain Blanchard. Evolution des génomes de mollicutes : une histoire pleine de rebondissements. 7e Rencontre Francophone de Mycoplasmologie, 2007, Lyon, France. pp.Inconnu. ⟨hal-02813016⟩

Pascal Sirand-Pugnet, Christine Citti, Aurélien Barré, Daniel Jacob, Alain Blanchard. Evolution des génomes de mollicutes : une histoire pleine de rebondissements. 7. Rencontre francophone de mycoplasmologie, Jul 2007, Lyon, France. ⟨hal-02755457⟩

Annick Moing, Graham Noctor, Catherine Deborde, Mickael Maucourt, Christel Renaud, et al.. MétaboP: a French initiative supported by Génoplante for the development of analytical and bioinformatic tools for plant metabolomics. 4. International conference, Apr 2006, Reading, United Kingdom. ⟨hal-02754317⟩

H. Ferry-Dumazet, A. Barre, D. Jacob, A. de Daruvar, Annick Moing, et al.. Bioinformatics resources for the study of plant metabolomics. 4. International conference, Apr 2006, Reading, United Kingdom. ⟨hal-02754398⟩

Sabine Pereyre, Philippe Avenaud, Alain Charron, Pascal Sirand-Pugnet, Daniel Jacob, et al.. The complete genome sequence of the human urogenital mycoplasma, Mycoplasma hominis. 16. International congress of the International Organization for Mycoplasmology, Jul 2006, Cambridge, United Kingdom. ⟨hal-02756026⟩

Catherine Deborde, Stéphane Bernillon, Cécile Cabasson, Mickael Maucourt, Christel Renaud, et al.. The Metabolome pole of the Functional Genomics Platform of Bordeaux. 2. Journées, Dec 2006, Saint Sauves d'Auvergne, France. ⟨hal-02753989⟩

Catherine Deborde, Mickael Maucourt, Christel Renaud, Monique Gaudillère, Cécile Cabasson, et al.. Metabolome-Fluxome facility at the Plant Systems Biology Institute in Bordeaux, France. 4. International conference, Apr 2006, Reading, United Kingdom. ⟨hal-02754805⟩

Pascal Sirand-Pugnet, Marc Marenda, Carole Lartigue Prat, Daniel Jacob, Valérie Barbe, et al.. Mycoplasma agalactiae genome: evidence for massive horizontal gene transfer between pathogenic, ruminant mycoplasmas. 16. International congress of the International Organization for Mycoplasmology, Jul 2006, Cambridge, United Kingdom. ⟨hal-02752179⟩

Hélène Ferry-Dumazet, Daniel Jacob, Aurélien Barré, Cécile Cabasson, Christel Renaud, et al.. Un outil informatique générique pour le stockage et le data-mining de données de métabolome de plantes. Premières journées scientifiques, Dec 2005, Toulouse, France. ⟨hal-02759485⟩

Catherine Deborde, G. Fourloubey, Daniel Jacob, Fabien Mounet, Cécile Cabasson, et al.. Chemical fingerprinting for the evaluation of polar and non polar metabolite changes during fruit development in tomato (Solanum lycopersicum) by means of H NMR. 6. Colloque national de la SFBV, Apr 2005, Arcachon, France. ⟨hal-02762461⟩

Catherine Deborde, Cécile Cabasson, Mickael Maucourt, Christel Renaud, Monique Gaudillère, et al.. Pôle Métabolome à l'IFR 103 Biologie Végétale Intégrative de Bordeaux. Premières journées scientifiques, Dec 2005, Toulouse, France. ⟨hal-02764501⟩

D. Jacob, A. Lecomte, G. Daufin. Pilotage d'une plate-forme de filtration tangentielle : le placement de pôles comme stratégie de mise au point des régulations. 4. Journées de la mesure, Oct 1996, Carry Le Rouet, France. ⟨hal-02764605⟩

D. Jacob, A. Lecomte. Démonstration d'un exemple d'utilisation du logiciel Acsyde en vue de la synthèse de différents régulateurs. 4. Journées de la mesure, Oct 1996, Carry Le Rouet, France. ⟨hal-02768835⟩

Daniel Jacob, Catherine Deborde, Annick Moing. NMRProcFLOW: A graphical and interactive tool dedicated to 1D spectra processing for plant NMR metabolomics. International Plant Spectroscopy Conference (IPSC), Mar 2019, Berlin, Germany. 2019. ⟨hal-02556875⟩

Stéphane Bernillon, Mickael Maucourt, Sylvain Chereau, Catherine Deborde, Daniel Jacob, et al.. Characterization of GMO or glyphosate effects on the composition of maize grain and maize-based diet for rat feeding. 12. Journées Scientifiques du RFMF, May 2019, Clermont-Ferrand, France. pp.109 /P30, 2019, 12. Journées Scientifiques du RFMF. ⟨hal-02556668⟩

Constance Musseau, Stéphane Bernillon, Catherine Deborde, Daniel Jacob, Joana Jorly, et al.. LC-MS and NMR metabolomics study of a tomato (Solanum lycopersicum L.) mutant affected in the fruit pericarp development. 12. Journées Scientifiques du RFMF, May 2019, Clermont-Ferrand, France. pp.128/P48, 2019, 12. Journées Scientifiques du RFMF. ⟨hal-02556782⟩

Stéphane Bernillon, Cecile Cabasson, Cédric Cassan, Grégory da Costa, Catherine Deborde, et al.. MetaboHUB-Bordeaux. Journées Scientifiques INRA-BAP, Sep 2019, Hyères, France. 2019, ⟨10.15454/1.5572412770331912E12⟩. ⟨hal-02570809⟩

Catherine Deborde, Roland Molinié, Jean-Xavier Fontaine, Adolfo Botana, François Mesnard, et al.. Inter laboratory comparison of a revisited protocol for 1D 1H-NMR profiling of plant samples from extract preparation to spectra processing. EUROMAR - European Magnetic Resonance Meeting, Jul 2018, Nantes, France. 2018. ⟨hal-02737299⟩

Maria Urrutia, Melisande Blein-Nicolas, Stéphane Bernillon, Catherine Deborde, Mickaël Maucourt, et al.. Combined metabolomic and proteomic profiling of maize leaf to reveal metabolic responses to cold temperatures. 11. Journées Scientifiques du RFMF, May 2018, Liège, Belgium. pp.P25, 2018, 11. Journées Scientifiques du RFMF. ⟨hal-03125712⟩

Daniel Jacob, Catherine Deborde, Marie Lefebvre, Mickael Maucourt, Annick Moing. NMRProcFlow: A graphical and interactive tool dedicated to 1D spectra processing for NMR-based metabolomics.. EUROMAR - European Magnetic Resonance Meeting, Jul 2018, Nantes, France. 2018. ⟨hal-02733608⟩

Catherine Deborde, Blandine Madji Hounoum, Daniel Jacob, Mickael Maucourt, Simon Roques, et al.. NMR-based metabolomics workflow for characterization and effect assessment of alternative plant-based diets on plasma and microbiote in rainbow trout. EUROMAR - European Magnetic Resonance Meeting, Jul 2018, Nantes, France. 2018. ⟨hal-02160639⟩

Daniel Jacob, Catherine Deborde, Marie Lefebvre, Mickaël Maucourt, Annick Moing. NMRProcFlow: An easy GUI tool dedicated to 1D NMR spectra processing (1H & 13C) for Metabolomics. 11. Journées Scientifiques du RFMF, May 2018, Liège, Belgium. pp.P24, 2018, 11. Journées Scientifiques du RFMF. ⟨hal-03125691⟩

Jean-Xavier Fontaine, Roland Molinié, Catherine Deborde, Adolfo Botana, Francois Mesnard, et al.. Precautions of a revisited protocol for 1D 1H-NMR profiling of plant samples from extract preparation to spectra processing. Preliminary results of an inter laboratory experiments.. 11. Journées Scientifiques du RFMF, May 2018, Liège, Belgium. pp.P34, 2018, 11. Journées Scientifiques du RFMF. ⟨hal-03125729⟩

Angela Machado Vieira, Stéphanie Cluzet, Catherine Deborde, Ghislaine Hilbert, Annick Moing, et al.. Characterization of a plant cell suspension culture of Vitis vinifera: biomass composition assessment before C13-metabolic flux analysis. 10. journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF 2016, May 2016, Montpellier, France. 2016. ⟨hal-02741756⟩

Annick Moing, Maria Urrutia, Olivier Fernandez, Vanessa Zhendre, Nadia Lamari, et al.. Searching for marker metabolites of crop performance. Metabolomics 2016. 12. Annual Conference of the Metabolomics Society, Jun 2016, Dublin, United Kingdom. 2016. ⟨hal-02744241⟩

Marie Lefebvre, Mickael Maucourt, Annick Moing, Dominique Rolin, Daniel Jacob, et al.. EMERODE: nuclEAR MagnEtic Resonance prOfiles DatabasE. 10. journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF 2016, May 2016, Montpellier, France. 2016. ⟨hal-02741930⟩

Catherine Deborde, Patricia Ballias, Camille Bénard, Stéphane Bernillon, Thierry Berton, et al.. Plant Metabolomics at Bordeaux Metabolome Facility, a member of MetaboHUB and PHENOME IA projects. Tools and Applications. Metabolomics 2016. 12. Annual Conference of the Metabolomics Society, Jun 2016, Dublin, United Kingdom. 2016. ⟨hal-02741696⟩

Catherine Deborde, Patricia Ballias, Camille Bénard, Stéphane Bernillon, Thierry Berton, et al.. Plant Metabolomics at Bordeaux Metabolome Facility, a member of MetaboHUB and PHENOME IA projects. Tools and Applications. 10. journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF 2016, May 2016, Montpellier, France. 2016. ⟨hal-02743906⟩

Léa Roch, Stéphane Bernillon, Mickael Maucourt, Catherine Deborde, Camille Benard, et al.. Combining MS and proton NMR metabolomic profiling during tomato fruit development to study environment effect on metabolism. 12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015 - Book of abstracts. ⟨hal-01606414⟩

Léa Roch, Stéphane Bernillon, Mickael Maucourt, Catherine Deborde, Camille Bénard, et al.. Combining MS and NMR metabolomic profiling during tomato fruit development to study environment effect on metabolism. 9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015. ⟨hal-02739251⟩

Nadia Lamari, Vanessa Zhendre, Stéphane Bernillon, Mickael Maucourt, Catherine Deborde, et al.. Cold treatment affects the metabolite profiles of maize leaves. 9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015. ⟨hal-02742488⟩

Annick Moing, Catherine Deborde, Patricia Ballias, Camille Bénard, Stéphane Bernillon, et al.. Plant Metabolomics at Bordeaux Metabolome Facility, a member of MetaboHUB and PHENOME IA projects. Tools and Applications.. 9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015. ⟨hal-02743630⟩

Mélanie Petera, Gildas Le Corguille, Marion Landi, Misharl Monsoor, Marie Tremblay Franco, et al.. Workflow4Metabolomics: A collaborative research infrastructure for computational metabolomics. JOBIM 2015 (16. édition des Journées Ouvertes en Biologie, Informatique et Mathématiques ), Jul 2015, Clermont-Ferrand, France. 2015, JOBIM (16e édition des Journées Ouvertes en Biologie, Informatique et Mathématiques ). ⟨10.1093/bioinformatics/btu813⟩. ⟨hal-01214152⟩

Marie Lefebvre, Julie Pinelli, Nils Paulhe, Vanessa Zhendre, Claire Lopez, et al.. Vers une annotation RMN 1D et 2D ciblée à partir de matrices de référence. 9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015. ⟨hal-02743576⟩

Marion Landi, Claire Lopez, Marie Tremblay Franco, Cecile Canlet, Yann Guitton, et al.. New tools and workflows on W4M, the Galaxy metabolomic infrastructure. 9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015. ⟨hal-02743697⟩

Nils Paulhe, Pierrick Roger, Marie-Françoise Olivier, Marie Lefebvre, Christophe Duperier, et al.. PeakForest: a spectral reference database made from metabolomic experts for metabolomic analyses. 9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015. ⟨hal-02742964⟩

Vanessa Zhendre, Mickael Maucourt, Daniel Jacob, Annick Moing, Dominique Rolin, et al.. Bibliothèques de spectres de RMN 1D et 2D de composés de référence pour la métabolomique végétale. 8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014. ⟨hal-02791990⟩

Mickael Maucourt, Camille Bénard, Benoit Biais, Patricia Ballias, Catherine Deborde, et al.. Combining metabolite and enzymatic profiling during tomato fruit development. 8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014. ⟨hal-02793996⟩

Nadia Lamari, Daniel Jacob, Catherine Deborde, Annick Moing, Stéphane Bernillon. Construction and application of reference MS spectral database for metabolite profiling and matrix annotation of plant organisms. 8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014. ⟨hal-02798309⟩

Daniel Schober, Michael Wilson, Daniel Jacob, Annick Moing, Catherine Deborde, et al.. nmrML: an XML-based open standard for NMR data storage and exchange. Metabolomics 2014 - 10. Annual Conference of the Metabolomics Society, Jun 2014, Tsuruoka, Japan. 2014. ⟨hal-02799345⟩

Annick Moing, Catherine Deborde, Patricia Ballias, Camille Bénard, Stéphane Bernillon, et al.. Plant Metabolomics at Bordeaux Metabolome Facility, a member of MetaboHUB IA project. Tools and Applications. 8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014. ⟨hal-02799366⟩

Reza M. Salek, Kenneth Haug, Pablo Conesa, Mark Williams, Steffen Neumann, et al.. MetaboLights: Metabolomics data repository and the role of COSMOS. 8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014. ⟨hal-02800369⟩

Nils Paulhe, Christophe Duperier, Daniel Jacob, Etienne Thévenot, Jean-Francois Martin, et al.. Spectral Database: from data model to web interface. 8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 2014. ⟨hal-02742064⟩

Stéphane Bernillon, Benoit Biais, Catherine Deborde, Laetitia Fouillen, Yvon Guntz, et al.. On-going method developments in Bordeaux Metabolome Facility. Metabolomics 2013 - 9. Annual conference of the Metabolomics Society, Jun 2013, Glasgow, United Kingdom. 2013. ⟨hal-02804388⟩

Daniel Jacob, Catherine Deborde, Annick Moing. ERVA method for 1H-NMR metabolomics data: a novel binning strategy highlighting chemical information. Metabolomics 2013, Jul 2013, Glasgow, United Kingdom. 1 p., 2013. ⟨hal-02805243⟩

Camille Benard, Stéphane Bernillon, Sonia Osorio-Algar, Mickael Maucourt, Benoit Biais, et al.. Influence of diurnal factor on compositional changes of tomato fruit and leaf. 7. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Jun 2013, Amiens, France. 2013. ⟨hal-02805301⟩

Stéphane Bernillon, Benoit Biais, Catherine Deborde, Laetitia Fouillen, Yvon Guntz, et al.. Coordinated methodological developments for plant metabolomics at Bordeaux. 7. Journées scientifiques du Réseau Français de Métabolomique et de Fluxomique, Jun 2013, Amiens, France. 2013. ⟨hal-02810760⟩

Catherine Deborde, Annick Moing, Cécile Cabasson, Stéphane Bernillon, Dominique Rolin, et al.. Mery-B: a plant metabolomics database and knowledge base. Metabolomics 2012, Jun 2012, Washington, United States. 1 p., 2012. ⟨hal-02801976⟩

Etienne Legrand, Mickael Maucourt, Catherine Deborde, Bertrand Beauvoit, Daniel Jacob, et al.. Evolution des profils métabolomiques au cours du développement du mésocarpe et de la graine du fruit de palmier à huile. 6. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique (RFMF), May 2012, Nantes, France. p. 89, 2012. ⟨hal-02811510⟩

Alexandre Verdu, Bernard Lyan, Carole Migne, Catherine Defoort, Cecile Canlet, et al.. Can we trust untargeted metabolomics: first results of the metabo-ring study. 8. Annual International Meeting of the Metabolomics Society, Jun 2012, Washington, United States. 2012. ⟨hal-01595487⟩

Pascal Sirand-Pugnet, M Marenda, C Lartigue, D Jacob, V Barbe, et al.. Mycoplasma agalactiae Genome: Evidence for Massive Horizontal Gene Transfer Between Pathogenic, Ruminant Mycoplasmas. 16th IOM Congress, 2006, Cambridge, United Kingdom. pp.Inconnu, 2006. ⟨hal-02814501⟩

Pascal Sirand-Pugnet, M Marenda, C Lartigue, D Jacob, V Barbe, et al.. Mycoplasma agalactiae genome: evidence for massive horizontal gene transfer between pathogenic, ruminant mycoplasmas. 16th International Congress of the International Organization for Mycoplasmology, 2006, Cambridge, United Kingdom. pp.Inconnu, 2006. ⟨hal-02815535⟩

Catherine Deborde, Daniel Jacob. MeRy-B, a Metabolomic Database and Knowledge Base for Exploring Plant Primary Metabolism.. Plant Metabolism : Methods and Protocols, 1083, Springer Science+Business Media, 2014, Methods in Molecular Biology, ⟨10.1007/978-1-62703-661-0_1⟩. ⟨hal-02793139⟩

Dominique Rolin, Catherine Deborde, Mickael Maucourt, Cécile Cabasson, Florence Fauvelle, et al.. High-resolution 1H-NMR spectroscopy and beyond to explore plant metabolome. Metabolomics Coming of Age with its Technological Diversity, 67 (1ère éd.), Elsevier Ltd, 693 p., 2013, Advances in Botanical Research, 978-0-12-397922-3. ⟨10.1016/B978-0-12-397922-3.00001-0⟩. ⟨hal-02811296⟩

Daniel Jacob, Catherine Deborde, Annick Moing. BioStatFlow -Statistical Analysis Workflow for "Omics" Data. 2020. ⟨hal-02894113⟩

Daniel Jacob. Modeling the growth of tomato fruits based on enzyme activity profiles.. 2020. ⟨hal-02611223⟩

Daniel Jacob, Catherine Deborde, Marie Lefebvre, Mickael Maucourt, Anick Moing. NMRProcFlow: A graphical and interactive tool dedicated to 1D spectra processing for NMR-based metabolomics. 2016. ⟨hal-01401241⟩