Recherche - Archive ouverte HAL Accéder directement au contenu

Filtrer vos résultats

45 résultats

Coarse grained models of solvent and proteins

D. Borgis
M2CELL-From Macromolecules to Cells, Dec 2005, Abbaye de Fontevraud, France
Communication dans un congrès hal-00159559v1

Density functional theory of solvation and its relation to implicit solvent models.

D. Borgis , R. Ramirez
Journal of Physical Chemistry B, 2005, 109, pp.6754-6763
Article dans une revue hal-00157409v1
Image document

Dielectric response of confined water films from a classical density functional theory perspective

D. Borgis , Damien Laage , Luc Belloni , Guillaume Jeanmairet
Chemical Science, 2023, 2023 (14), pp.11141-11150. ⟨10.1039/D3SC01267K⟩
Article dans une revue hal-04241385v2

Particle-based implicit solvent model for biosimulations : Application to proteins and nucleic acids hydration.

N. Basdevant , T. Ha-Duong , D. Borgis
Journal of Chemical Theory and Computation, 2006, pp.1646-1656
Article dans une revue hal-00158057v1

Dynamique moléculaire: explorer un ensemble thermodynamique avec des trajectoires

D. Borgis
Ecole thématique du CNRS: "Modélisation en Chimie : Techniques de dynamique moléculaire en phase condensée", Jun 2005, Paris, France
Communication dans un congrès hal-00159624v1
Image document

Bridge functional for the molecular density functional theory with consistent pressure and surface tension and its importance for solvation in water

Cédric Gageat , Luc Belloni , Daniel Borgis , Maximilien Levesque
2017
Pré-publication, Document de travail cea-01612950v1

Fast Computation of Solvation Free Energies with Molecular Density Functional Theory: Thermodynamic-Ensemble Partial Molar Volume Corrections

Volodymyr P. Sergiievskyi , Guillaume Jeanmairet , Maximilien Levesque , Daniel Borgis
Journal of Physical Chemistry Letters, 2014, 5 (11), ⟨10.1021/jz500428s⟩
Article dans une revue hal-01308791v1

Molecular density functional theory of water describing hydrophobicity at short and long length scales

Guillaume Jeanmairet , Maximilien Levesque , Daniel Borgis
Journal of Chemical Physics, 2013, 139 (15), ⟨10.1063/1.4824737⟩
Article dans une revue hal-01308799v1

Solvation of complex surfaces via molecular density functional theory

Maximilien Levesque , Virginie Marry , Benjamin Rotenberg , Guillaume Jeanmairet , Rodolphe Vuilleumier , et al.
Journal of Chemical Physics, 2012, 137 (22), ⟨10.1063/1.4769729⟩
Article dans une revue hal-01308817v1
Image document

Computation of pair distribution functions and three- dimensional densities with a reduced variance principle

Daniel Borgis , Roland Assaraf , Benjamin Rotenberg , Rodolphe Vuilleumier
Molecular Physics, 2013, 111, pp.3486
Article dans une revue hal-01078958v1

Introduction to Classical Density Functional Theory by a Computational Experiment

Guillaume Jeanmairet , Nicolas Lévy , Maximilien Levesque , Daniel Borgis
Journal of Chemical Education, 2014, 91 (12), ⟨10.1021/ed500049m⟩
Article dans une revue hal-01308784v1
Image document

Molecular density functional theory of water including density–polarization coupling

Guillaume Jeanmairet , Nicolas Lévy , Maximilien Levesque , Daniel Borgis
Journal of Physics: Condensed Matter, 2016, 28 (24), ⟨10.1088/0953-8984/28/24/244005⟩
Article dans une revue hal-01308758v1
Image document

Screened Coulombic Orientational Correlations in Dilute Aqueous Electrolytes

Luc Belloni , Daniel Borgis , Maximilien Levesque
Journal of Physical Chemistry Letters, 2018, 9 (8), pp.1985 - 1989. ⟨10.1021/acs.jpclett.8b00606⟩
Article dans une revue cea-01779405v1

A dielectric continuum model of solvation for complex solutes

Nicolas Lévy , D. Borgis , M. Marchi
Computer Physics Communications, 2005, 169 (1-3), pp.69-74. ⟨10.1016/j.cpc.2005.03.018⟩
Article dans une revue istex hal-00157407v1

Quantized time correlation function approach to nonadiabatic decay rates in condensed phase

D. Borgis
International Conference on Transient Chemical Structures in Dense, Mar 2005, Media, Paris, France
Communication dans un congrès hal-00159605v1

Coarse-Graining the Accessible Surface and the lectrostatics of Proteins for Protein Interactions.

Francesco Pizzitutti , Massimo Marchi , Daniel Borgis
J Chem Theory and Comp, 2007, pp.1867-1876
Article dans une revue hal-00264539v1
Image document

High-throughput free energies and water maps for drug discovery through molecular density functional theory

Sohvi Luukkonen , Luc Belloni , Daniel Borgis , Maximilien Levesque
6ème workshop AMMIB, May 2018, Evry, France
Communication dans un congrès cea-02340016v1

Extracting effective normal modes from equilibrium dynamics at finite temperature.

M. Martinez , M.-P. Gaigeot , D. Borgis , R. Vuilleumier
Journal of Chemical Physics, 2006, 125, pp.144106
Article dans une revue hal-00157618v1

Modeling Protein–Protein Recognition in Solution Using the Coarse-Grained Force Field SCORPION

Nathalie Basdevant , Daniel Borgis , Tap Ha-Duong
Journal of Chemical Theory and Computation, 2013, 9 (1), pp.803-813. ⟨10.1021/CT300943W⟩
Article dans une revue hal-02112584v1

Accurate evaluation of the angular-dependent direct correlation function of water

Shuangliang Zhao , Honglai Liu , Rosa Ramirez , Daniel Borgis
Journal of Chemical Physics, 2013, 139 (3), pp.034503. ⟨10.1063/1.4813400⟩
Article dans une revue hal-02112577v1
Image document

A molecular density functional theory approach to electron transfer reactions

Guillaume Jeanmairet , Benjamin Rotenberg , Maximilien Levesque , Daniel Borgis , Mathieu Salanne
Chemical Science, 2019, 10 (7), pp.2130-2143. ⟨10.1039/c8sc04512g⟩
Article dans une revue hal-02055678v1

Infrared spectroscopy of N-Methyl-Acetamide revisited by ab initio molecular dynamics simulations

M.-P. Gaigeot , R. Vuilleumier , M. Sprik , D. Borgis
Journal of Chemical Theory and Computation, 2005, 1, pp.772-789. ⟨10.1021/ct050029z⟩
Article dans une revue hal-00157370v1
Image document

Predicting hydration free energies of the freesolv database of drug-like molecules with molecular density functional theory

Sohvi Luukkonen , Luc Belloni , Daniel Borgis , Maximilien Levesque
Journal of Chemical Information and Modeling, 2020, 60 (7), pp.3558-3565. ⟨10.1021/acs.jcim.0c00526⟩
Article dans une revue cea-02909000v1

Generating approximate Wigner distributions using Gaussian phase packets propagation in imaginary time.

D. Borgis , M.-P. Gaigeot , C. Marinica
Chemical Physics Letters, 2006, 423, pp.390-394
Article dans une revue hal-00157668v1

Solvation free-energy pressure corrections in the three dimensional reference interaction site model

Volodymyr Sergiievskyi , Guillaume Jeanmairet , Maximilien Levesque , Daniel Borgis
Journal of Chemical Physics, 2015, 143 (18), pp.184116. ⟨10.1063/1.4935065⟩
Article dans une revue hal-01308776v1
Image document

Simple Parameter-Free Bridge Functionals for Molecular Density Functional Theory. Application to Hydrophobic Solvation

Daniel Borgis , Sohvi Luukkonen , Luc Belloni , Guillaume Jeanmairet
Journal of Physical Chemistry B, 2020, 124, pp.6885-6893. ⟨10.1021/acs.jpcb.0c04496⟩
Article dans une revue cea-02899078v1

Quantized time correlation function approach to nonadiabatic decay rates in condensed phase: Application to solvated electrons in water and in methanol

D. Borgis
Workshop on Quantum Dynamics of Complex Molecular Systems, May 2005, Paris, France
Communication dans un congrès hal-00159539v1
Image document

Tackling Solvent Effects by Coupling Electronic and Molecular Density Functional Theory

Guillaume Jeanmairet , Maximilien Levesque , Daniel Borgis
Journal of Chemical Theory and Computation, 2020, ⟨10.1021/acs.jctc.0c00729⟩
Article dans une revue hal-02989427v1

Quantized time correlation function approach to nonadiabatic decay rates in condensed phase: Application to solvated electrons in water and methanol

D. Borgis , P.-J. Rossky , L. Turi
Journal of Chemical Physics, 2006, 125, pp.064501. ⟨10.1063/1.2221685⟩
Article dans une revue hal-00157791v1
Image document

Computing three-dimensional densities from force densities improves statistical efficiency

Samuel W. Coles , Daniel Borgis , Rodolphe Vuilleumier , Benjamin Rotenberg
Journal of Chemical Physics, 2019, 151 (6), pp.064124. ⟨10.1063/1.5111697⟩
Article dans une revue hal-02285093v1