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Damien Eveillard

12
Documents

Présentation

I try to represent the behavior of living systems on different scales by various modeling approaches based on constraint programming. In my opinion, a living system should be formalized as an hybrid automaton under constraints. My biological studies concern biological systems from molecular to ecological scales, with a special emphasis on marine systems.
I try to represent the behavior of living systems on different scales by various modeling approaches based on constraint programming. In my opinion, a living system should be formalized as an hybrid automaton under constraints. My biological studies concern biological systems from molecular to ecological scales, with a special emphasis on marine systems.

Publications

829224
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Synergic Effects of Temperature and Irradiance on the Physiology of the Marine Synechococcus Strain WH7803

Ulysse Guyet , Ngoc Thanh Nguyen , Hugo Doré , Julie Haguait , Justine Pittera
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.01707⟩
Article dans une revue hal-02929424v1
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Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks

Julie Laniau , Clémence Frioux , Jacques Nicolas , Caroline Baroukh , Maria-Paz Cortés
PeerJ, 2017, 5, pp.e3860. ⟨10.7717/peerj.3860⟩
Article dans une revue hal-01635688v1

Deciphering transcriptional regulations coordinating the response to environmental changes

Vicente Acuña , Andrés Aravena , Carito Guziolowski , Damien Eveillard , Anne Siegel
BMC Bioinformatics, 2016, 17 (1), pp.129-42. ⟨10.1186/s12859-016-0885-0⟩
Article dans une revue hal-01260866v1

Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach

Philippe Bordron , Mauricio Latorre , Maria-Paz Cortés , Mauricio Gonzales , Sven Thiele
MicrobiologyOpen, 2016, 5 (1), pp.106-117. ⟨10.1002/mbo3.315⟩
Article dans une revue hal-01246173v1

The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond.

Sylvain Prigent , Guillaume Collet , Simon M Dittami , Ludovic Delage , Floriane Ethis de Corny
Plant Journal, 2014, 80 (2), pp.367-381. ⟨10.1111/tpj.12627⟩
Article dans une revue hal-01057153v1

Integrating quantitative knowledge into a qualitative gene regulatory network.

Jérémie Bourdon , Damien Eveillard , Anne Siegel
PLoS Computational Biology, 2011, 7 (9), pp.e1002157. ⟨10.1371/journal.pcbi.1002157⟩
Article dans une revue hal-00626708v1
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Toward systems biology in brown algae to explore acclimation and adaptation to the shore environment.

Thierry Tonon , Damien Eveillard , Sylvain Prigent , Jérémie Bourdon , Philippe Potin
OMICS, 2011, 15 (12), pp.883-892. ⟨10.1089/omi.2011.0089⟩
Article dans une revue hal-00661751v1

Toward a better understanding of the plant microbiota

Victoria Potdevin , Marie Chevallier , Ruben Garrido Oter , Anne Siegel , Stéphane Hacquard
4ème colloque de Génomique Environnementale, GDR Génomique Environnementale, Sep 2017, Marseille, France
Communication dans un congrès hal-01576743v1

Systems biology approaches at cellular level in the model organism Ectocarpus siliculosus to better understand brown algal physiology

Thierry Tonon , Patricia Bonin , Sylvain Prigent , Z. Shao , Agnès Groisillier
Esil 2012: algal post-genomics, Apr 2012, Roscoff, France
Communication dans un congrès hal-00760640v1

L'écologie des systèmes

Damien Eveillard , Anne Siegel , Philippe Vandenkoornhuyse
Mokrane Bouzeghoub et Rémy Mosseri. Les Big Data à Découvert, CNRS éditions, 2017, 978-2-271-11464-8
Chapitre d'ouvrage hal-01575603v1

L’écologie des systèmes

Damien Eveillard , Anne Siegel , Philippe Vandenkoornhuyse
CNRS éditions. Les big data à découvert, Mokrane Bouzeghoub et Rémy Mosseri, 2017, 978-2-271-11464-8
Chapitre d'ouvrage hal-02389705v1