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Damien Eveillard

6
Documents

Présentation

I try to represent the behavior of living systems on different scales by various modeling approaches based on constraint programming. In my opinion, a living system should be formalized as an hybrid automaton under constraints. My biological studies concern biological systems from molecular to ecological scales, with a special emphasis on marine systems.
I try to represent the behavior of living systems on different scales by various modeling approaches based on constraint programming. In my opinion, a living system should be formalized as an hybrid automaton under constraints. My biological studies concern biological systems from molecular to ecological scales, with a special emphasis on marine systems.

Publications

756004
Image document

Contribution of genome‐scale metabolic modelling to niche theory

 Antoine Régimbeau , Marko Budinich , Abdelhalim Larhlimi , Juan José Pierella Karlusich , Olivier Aumont
Ecology Letters, 2022, 25 (6), pp.1352-1364. ⟨10.1111/ele.13954⟩
Article dans une revue hal-03635158v1

A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems.

 Marko Budinich , Jérémie Bourdon , Abdelhalim Larhlimi , Damien Eveillard
PLoS ONE, 2017, 12 (2), pp.e0171744
Article dans une revue hal-01478375v1
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Plankton networks driving carbon export in the oligotrophic ocean

 Lionel Guidi , Samuel Chaffron , Lucie Bittner , Damien Eveillard , Abdelhalim Larhlimi
Nature, 2016, 532, pp.465-470. ⟨10.1038/nature16942⟩
Article dans une revue hal-01275276v1

OPINION PAPER Evolutionary Constraint-Based Formulation Requires New Bi-level Solving Techniques

 Marko Budinich , Jérémie Bourdon , Abdelhalim Larhlimi , Damien Eveillard
13th International Conference on Computational Methods in Systems Biology CMSB 2015, Sep 2015, Nantes, France. pp.279-281, ⟨10.1007/978-3-319-23401-4_23⟩
Communication dans un congrès hal-02464859v1
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KOALAB: A new method for regulatory motif search. Illustration on alternative splicing regulation in HIV-1

 Damien Eveillard , Abdelhalim Larhlimi , Delphine Ropers , Stéphanie Billaut , Sandrine Peyrefitte
5èmes Journées Ouvertes Biologie Informatique Mathématiques - JOBIM 2004, Jun 2004, Montréal, Canada
Communication dans un congrès inria-00000915v1

Contribution of genome scale metabolic modeling to niche theory

 Antoine Régimbeau , Marko Budinich , Abdelhalim Larhlimi , Juan Jose Pierella Karlusich , Olivier Aumont
2021
Pré-publication, Document de travail hal-03352833v1