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Number of documents

9

Systems biology, Systems Ecology & Computational Biology


I try to represent the behavior of living systems on different scales by various modeling approaches based on constraint programming. In my opinion, a living system should be formalized as an hybrid automaton under constraints.

 

My biological studies concern biological systems from molecular to ecological scales, with a special emphasis on marine systems.


Sylvain Prigent   

Journal articles6 documents

  • Sylvain Prigent, Clémence Frioux, Simon Dittami, Sven Thiele, Abdelhalim Larhlimi, et al.. Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. PLoS Computational Biology, Public Library of Science, 2017, 13 (1), pp.e1005276. ⟨10.1371/journal.pcbi.1005276⟩. ⟨hal-02937671⟩
  • Sylvain Prigent, Clémence Frioux, Simon M Dittami, Sven Thiele, Abdelhalim Larhlimi, et al.. Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. PLoS Computational Biology, Public Library of Science, 2017, 13 (1), pp.32. ⟨10.1371/journal.pcbi.1005276⟩. ⟨hal-01449100⟩
  • Sylvain Prigent, Guillaume Collet, Simon Dittami, Ludovic Delage, Floriane Ethis de Corny, et al.. The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond. Plant Journal, Wiley, In press, 80 (2), pp.367-381. ⟨10.1111/tpj.12627⟩. ⟨hal-02937717⟩
  • Sylvain Prigent, Guillaume Collet, Simon M Dittami, Ludovic Delage, Floriane Ethis de Corny, et al.. The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond.. Plant Journal, Wiley, 2014, 80 (2), pp.367-381. ⟨10.1111/tpj.12627⟩. ⟨hal-01057153⟩
  • Thierry Tonon, Damien Eveillard, Sylvain Prigent, Jérémie Bourdon, Philippe Potin, et al.. Toward Systems Biology in Brown Algae to Explore Acclimation and Adaptation to the Shore Environment. OMICS, Mary Ann Liebert, 2011, 15 (12), pp.883-892. ⟨10.1089/omi.2011.0089⟩. ⟨hal-02937721⟩
  • Thierry Tonon, Damien Eveillard, Sylvain Prigent, Jérémie Bourdon, Philippe Potin, et al.. Toward systems biology in brown algae to explore acclimation and adaptation to the shore environment.. OMICS, Mary Ann Liebert, 2011, 15 (12), pp.883-892. ⟨10.1089/omi.2011.0089⟩. ⟨hal-00661751⟩

Conference papers3 documents

  • Guillaume Collet, Damien Eveillard, Martin Gebser, Sylvain Prigent, Torsten Schaub, et al.. Extending the Metabolic Network of Ectocarpus Siliculosus using Answer Set Programming. LPNMR - 12th Conference on Logic Programming and Nonmonotonic Reasoning - 2013, Sep 2013, Corunna, Spain. ⟨hal-00853752⟩
  • Guillaume Collet, Damien Eveillard, Martin Gebser, Sylvain Prigent, Torsten Schaub, et al.. Extending the Metabolic Network of Ectocarpus Siliculosus Using Answer Set Programming. LPNMR, 2013, ⟨10.1007/978-3-642-40564-8_25⟩. ⟨hal-02745669⟩
  • Thierry Tonon, Patricia Bonin, Sylvain Prigent, Z. Shao, Agnès Groisillier, et al.. Systems biology approaches at cellular level in the model organism Ectocarpus siliculosus to better understand brown algal physiology. Esil 2012: algal post-genomics, Apr 2012, Roscoff, France. ⟨hal-00760640⟩