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Number of documents

6

Systems biology, Systems Ecology & Computational Biology


I try to represent the behavior of living systems on different scales by various modeling approaches based on constraint programming. In my opinion, a living system should be formalized as an hybrid automaton under constraints.

 

My biological studies concern biological systems from molecular to ecological scales, with a special emphasis on marine systems.


Simon M Dittami   

Journal articles6 documents

  • Simon Dittami, Enrique Arboleda, Jean-Christophe Auguet, Arite Bigalke, Enora Briand, et al.. A community perspective on the concept of marine holobionts: state-of-the-art, challenges, and future directions. PeerJ Preprints, Computer Science Preprints., 2019, 7, pp.e27519v1. ⟨10.7287/peerj.preprints.27519v1⟩. ⟨hal-02169877⟩
  • Sylvain Prigent, Clémence Frioux, Simon Dittami, Sven Thiele, Abdelhalim Larhlimi, et al.. Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. PLoS Computational Biology, Public Library of Science, 2017, 13 (1), pp.e1005276. ⟨10.1371/journal.pcbi.1005276⟩. ⟨hal-02937671⟩
  • Sylvain Prigent, Clémence Frioux, Simon M Dittami, Sven Thiele, Abdelhalim Larhlimi, et al.. Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. PLoS Computational Biology, Public Library of Science, 2017, 13 (1), pp.32. ⟨10.1371/journal.pcbi.1005276⟩. ⟨hal-01449100⟩
  • Sylvain Prigent, Guillaume Collet, Simon Dittami, Ludovic Delage, Floriane Ethis de Corny, et al.. The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond. Plant Journal, Wiley, In press, 80 (2), pp.367-381. ⟨10.1111/tpj.12627⟩. ⟨hal-02937717⟩
  • Simon M Dittami, Damien Eveillard, Thierry Tonon. A metabolic approach to study algal-bacterial interactions in changing environments.. Molecular Ecology, Wiley, 2014, 23 (7), pp.1656-60. ⟨10.1111/mec.12670⟩. ⟨hal-00936195⟩
  • Sylvain Prigent, Guillaume Collet, Simon M Dittami, Ludovic Delage, Floriane Ethis de Corny, et al.. The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond.. Plant Journal, Wiley, 2014, 80 (2), pp.367-381. ⟨10.1111/tpj.12627⟩. ⟨hal-01057153⟩