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Co-authors

Number of documents

8

Systems biology, Systems Ecology & Computational Biology


I try to represent the behavior of living systems on different scales by various modeling approaches based on constraint programming. In my opinion, a living system should be formalized as an hybrid automaton under constraints.

 

My biological studies concern biological systems from molecular to ecological scales, with a special emphasis on marine systems.


Samuel Chaffron   

Journal articles4 documents

  • Luigi Caputi, Quentin Carradec, Damien Eveillard, Amos Kirilovsky, Eric Pelletier, et al.. Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems. Global Biogeochemical Cycles, American Geophysical Union, 2019, 3 (33), pp.391-419. ⟨10.1029/2018GB006022⟩. ⟨hal-02074931⟩
  • Jean-Louis Jamet, Luigi Caputi, Quentin Carradec, Damien Eveillard, Amos Kirilovsky, et al.. Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems. Global Biogeochemical Cycles, American Geophysical Union, 2019, 33 (3), pp.391-419. ⟨10.1029/2018GB006022⟩. ⟨hal-02999805⟩
  • Antonietta Capotondi, Michael Jacox, Chris Bowler, Maria Kavanaugh, Patrick Lehodey, et al.. Observational Needs Supporting Marine Ecosystems Modeling and Forecasting: From the Global Ocean to Regional and Coastal Systems. Frontiers in Marine Science, Frontiers Media, 2019, 6, pp.623. ⟨10.3389/fmars.2019.00623⟩. ⟨hal-02316446⟩
  • Lionel Guidi, Samuel Chaffron, Lucie Bittner, Damien Eveillard, Abdelhalim Larhlimi, et al.. Plankton networks driving carbon export in the oligotrophic ocean. Nature, Nature Publishing Group, 2016, 532, pp.465-470. ⟨10.1038/nature16942⟩. ⟨hal-01275276⟩

Conference papers1 document

  • Damien Eveillard, Lionel Guidi, Lucie Bittner, Samuel Chaffron, Jeroen Raes, et al.. Revealing and analyzing networks of marine microbial ecosystems. Conférence Jacques Monod - Marine Ecosystems Biology, 2015, Roscoff, France. ⟨hal-01176727⟩

Book sections1 document

  • Lucie Bittner, Lionel Guidi, Samuel Chaffron, Damien Eveillard. Les microbiomes de l'océan : une démarche à haut débit pour une compréhension globale et systémique. Laurent Palka. Microbiodiversité : un nouveau regard, 161 - 185, editions matériologiques, 2018. ⟨hal-01996304⟩

Preprints, Working Papers, ...2 documents

  • Samuel Chaffron, Erwan Delage, M. Budinich, D. Vintache, N. Henry, et al.. Environmental vulnerability of the global ocean plankton community interactome. 2021. ⟨hal-03097196⟩
  • Marta Royo-Llonch, Pablo Sánchez, Clara Ruiz-González, Guillem Salazar, Carlos Pedrós-Alió, et al.. Ecogenomics of key prokaryotes in the arctic ocean. 2020. ⟨hal-02946895⟩