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Damien Eveillard

21
Documents

Présentation

I try to represent the behavior of living systems on different scales by various modeling approaches based on constraint programming. In my opinion, a living system should be formalized as an hybrid automaton under constraints. My biological studies concern biological systems from molecular to ecological scales, with a special emphasis on marine systems.
I try to represent the behavior of living systems on different scales by various modeling approaches based on constraint programming. In my opinion, a living system should be formalized as an hybrid automaton under constraints. My biological studies concern biological systems from molecular to ecological scales, with a special emphasis on marine systems.

Publications

samuel-chaffron

Disentangling microbial networks across pelagic zones in the tropical and subtropical global ocean

Ina Deutschmann , Erwan Delage , Caterina Giner , Marta Sebastián , Julie Poulain
Nature Communications, 2024, 15 (1), pp.126. ⟨10.1038/s41467-023-44550-y⟩
Article dans une revue hal-04407573v1
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Disentangling temporal associations in marine microbial networks

Ina Maria Deutschmann , Anders Krabberød , Francisco Latorre , Erwan Delage , Cèlia Marrasé
Microbiome, 2023, 11 (83), https://doi.org/10.1186/s40168-023-01523-z. ⟨10.1101/2021.07.13.452187⟩
Article dans une revue hal-03781901v2
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Ocean-wide comparisons of mesopelagic planktonic community structures

Janaina Rigonato , Marko Budinich , Alejandro Murillo , Manoela Brandão , Juan Pierella Karlusich
ISME Communications, 2023, 3 (1), pp.83. ⟨10.1038/s43705-023-00279-9⟩
Article dans une revue hal-04184772v1
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Priorities for ocean microbiome research

Andre Abreu , Etienne Bourgois , Adam Gristwood , Romain Troublé , Silvia Acinas
Nature Microbiology, 2022, 7 (7), pp.937-947. ⟨10.1038/s41564-022-01145-5⟩
Article dans une revue hal-03781942v1
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Diversity and ecological footprint of Global Ocean RNA viruses

Guillermo Dominguez-Huerta , Ahmed Zayed , James Wainaina , Jiarong Guo , Funing Tian
Science, 2022, 376 (6598), pp.1202-1208. ⟨10.1126/science.abn6358⟩
Article dans une revue hal-03781935v1
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Decline in plankton diversity and carbon flux with reduced sea ice extent along the Western Antarctic Peninsula

Yajuan Lin , Carly Moreno , Adrian Marchetti , Hugh Ducklow , Oscar Schofield
Nature Communications, 2021, 12, pp.4948. ⟨10.1038/s41467-021-25235-w⟩
Article dans une revue hal-03389081v1
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Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean

Marta Royo-Llonch , Pablo Sánchez , Clara Ruiz-González , Guillem Salazar , Carlos Pedrós-Alió
Nature Microbiology, 2021, 6 (12), pp.1561-1574. ⟨10.1038/s41564-021-00979-9⟩
Article dans une revue hal-03781908v1
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Environmental vulnerability of the global ocean epipelagic plankton community interactome

Samuel Chaffron , Erwan Delage , Marko Budinich , Damien Vintache , Nicolas Henry
Science Advances , 2021, 7 (35), pp.eabg1921. ⟨10.1126/sciadv.abg1921⟩
Article dans une revue hal-03443359v2
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Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems

Luigi Caputi , Quentin Carradec , Damien Eveillard , Amos Kirilovsky , Eric Pelletier
Global Biogeochemical Cycles, 2019, 33 (3), pp.391-419. ⟨10.1029/2018GB006022⟩
Article dans une revue hal-02999805v1
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Observational Needs Supporting Marine Ecosystems Modeling and Forecasting: From the Global Ocean to Regional and Coastal Systems

Antonietta Capotondi , Michael Jacox , Chris Bowler , Maria Kavanaugh , Patrick Lehodey
Frontiers in Marine Science, 2019, 6, pp.623. ⟨10.3389/fmars.2019.00623⟩
Article dans une revue hal-02316446v1
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Plankton networks driving carbon export in the oligotrophic ocean

Lionel Guidi , Samuel Chaffron , Lucie Bittner , Damien Eveillard , Abdelhalim Larhlimi
Nature, 2016, 532, pp.465-470. ⟨10.1038/nature16942⟩
Article dans une revue hal-01275276v1

Assessing functional diversity of plankton communities from high throughput –omics data

Sakina-Dorothée Ayata , E. Faure , A.-S. Benoiston , O. Silva , V. Sonnet
Colloque de Bilan et de Prospective du programme LEFE, Mar 2018, Clermont-Ferrand, France. 2018
Poster de conférence hal-04021818v1

Les microbiomes de l'océan : une démarche à haut débit pour une compréhension globale et systémique

Lucie Bittner , Lionel Guidi , Samuel Chaffron , Damien Eveillard
Laurent Palka. Microbiodiversité : un nouveau regard, 161 - 185, editions matériologiques, 2018
Chapitre d'ouvrage hal-01996304v1