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Systems biology, Systems Ecology & Computational Biology

I try to represent the behavior of living systems on different scales by various modeling approaches based on constraint programming. In my opinion, a living system should be formalized as an hybrid automaton under constraints.


My biological studies concern biological systems from molecular to ecological scales, with a special emphasis on marine systems.

Lionel Guidi   

Journal articles5 documents

  • Shinichi Sunagawa, Silvia Acinas, Peer Bork, Chris Bowler, Damien Eveillard, et al.. Tara Oceans: towards global ocean ecosystems biology. Nature Reviews Microbiology, Nature Publishing Group, 2020, 18, pp.428-445. ⟨10.1038/s41579-020-0364-5⟩. ⟨hal-02862376⟩
  • Simon Ramondenc, Damien Eveillard, Lionel Guidi, Fabien Lombard, Benoit Delahaye. Probabilistic modeling to estimate jellyfish ecophysiological properties and size distributions. Scientific Reports, Nature Publishing Group, 2020, 10 (1), ⟨10.1038/s41598-020-62357-5⟩. ⟨hal-02539195⟩
  • Antonietta Capotondi, Michael Jacox, Chris Bowler, Maria Kavanaugh, Patrick Lehodey, et al.. Observational Needs Supporting Marine Ecosystems Modeling and Forecasting: From the Global Ocean to Regional and Coastal Systems. Frontiers in Marine Science, Frontiers Media, 2019, 6, pp.623. ⟨10.3389/fmars.2019.00623⟩. ⟨hal-02316446⟩
  • Luigi Caputi, Quentin Carradec, Damien Eveillard, Amos Kirilovsky, Eric Pelletier, et al.. Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems. Global Biogeochemical Cycles, American Geophysical Union, 2019, 3 (33), pp.391-419. ⟨10.1029/2018GB006022⟩. ⟨hal-02074931⟩
  • Lionel Guidi, Samuel Chaffron, Lucie Bittner, Damien Eveillard, Abdelhalim Larhlimi, et al.. Plankton networks driving carbon export in the oligotrophic ocean. Nature, Nature Publishing Group, 2016, 532, pp.465-470. ⟨10.1038/nature16942⟩. ⟨hal-01275276⟩

Conference papers1 document

  • Damien Eveillard, Lionel Guidi, Lucie Bittner, Samuel Chaffron, Jeroen Raes, et al.. Revealing and analyzing networks of marine microbial ecosystems. Conférence Jacques Monod - Marine Ecosystems Biology, 2015, Roscoff, France. ⟨hal-01176727⟩

Book sections1 document

  • Lucie Bittner, Lionel Guidi, Samuel Chaffron, Damien Eveillard. Les microbiomes de l'océan : une démarche à haut débit pour une compréhension globale et systémique. Laurent Palka. Microbiodiversité : un nouveau regard, 161 - 185, editions matériologiques, 2018. ⟨hal-01996304⟩

Preprints, Working Papers, ...1 document

  • Daniel Richter, Romain Watteaux, Thomas Vannier, Jade Leconte, Paul Frémont, et al.. Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems. 2020. ⟨hal-02399723⟩