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Number of documents

5

Systems biology, Systems Ecology & Computational Biology


I try to represent the behavior of living systems on different scales by various modeling approaches based on constraint programming. In my opinion, a living system should be formalized as an hybrid automaton under constraints.

 

My biological studies concern biological systems from molecular to ecological scales, with a special emphasis on marine systems.


Delphine Ropers   

Journal articles1 document

  • Damien Eveillard, Delphine Ropers, Hidde de Jong, Christiane Branlant, Alexander Bockmayr. A multi-scale constraint programming model of alternative splicing regulation. Theoretical Computer Science, Elsevier, 2004, Special issue: computational systems biology, 325 (1), pp.3-24. ⟨10.1016/j.tcs.2004.03.062⟩. ⟨inria-00000916⟩

Conference papers2 documents

  • Damien Eveillard, Abdelhalim Larhlimi, Delphine Ropers, Stéphanie Billaut, Sandrine Peyrefitte. KOALAB: A new method for regulatory motif search. Illustration on alternative splicing regulation in HIV-1. 5èmes Journées Ouvertes Biologie Informatique Mathématiques - JOBIM 2004, Jun 2004, Montréal, Canada. ⟨inria-00000915⟩
  • Damien Eveillard, Delphine Ropers, Hidde de Jong, Christiane Branlant, Alexander Bockmayr. Multiscale modeling of alternative splicing regulation. International Workshop on Computational Methods in Systems Biology - CMSB'03, 2003, Rovereto, Italie, pp.75-87. ⟨inria-00099792⟩

Reports2 documents

  • Damien Eveillard, Delphine Ropers, Hidde de Jong, Christiane Branlant, Alexander Bockmayr. A Multi-Site Constraint Programming Model of Alternative Splicing Regulation. [Research Report] RR-4830, INRIA. 2003. ⟨inria-00071756⟩
  • Damien Eveillard, Delphine Ropers, Hidde de Jong, Christiane Branlant, Alexander Bockmayr. Modeling the effects of SR proteins on alternative splicing. [Intern report] A02-R-117 || eveillard02b, 2002, 8 p. ⟨inria-00101060⟩