Cristina VIEIRA

Mohamed Mourdas, Nguyet Dang, Yuki Ogyama, Nelly Burlet, Bruno Mugat, et al.. A transposon story: from TE content to TE dynamic invasion of Drosophila genomes using the single-molecule sequencing technology from Oxford Nanopore. Cells, MDPI, In press. ⟨hal-02905128⟩

Marcelo Castro, Clément Goubert, Fernando Monteiro, Cristina Vieira, Claudia Carareto. Homology-Free Detection of Transposable Elements Unveils Their Dynamics in Three Ecologically Distinct Rhodnius Species. Genes, MDPI, 2020, 11 (2), pp.170. ⟨10.3390/genes11020170⟩. ⟨hal-02487180⟩

Pierre Marin, Julien Genitoni, Dominique Barloy, Stéphane Maury, Patricia Gibert, et al.. Biological Invasion: The Influence of the Hidden Side of the (Epi)Genome. Functional Ecology, Wiley, In press, pp.1-55. ⟨10.1111/1365-2435.13317⟩. ⟨hal-02063295⟩

Marie Fablet, Angelo Jacquet, Rita Rebollo, Annabelle Haudry, Carine Rey, et al.. Dynamic Interactions Between the Genome and an Endogenous Retrovirus: Tirant in Drosophila simulans Wild-Type Strains. G3, Genetics Society of America, 2019, 9 (3), pp.855-865. ⟨10.1534/g3.118.200789⟩. ⟨hal-02004384⟩

Emmanuelle Lerat, Josep Casacuberta, Cristian Chaparro, Cristina Vieira. On the Importance to Acknowledge Transposable Elements in Epigenomic Analyses. Genes, MDPI, 2019, 10 (4), pp.258. ⟨10.3390/genes10040258⟩. ⟨hal-02093613⟩

Bianca Menezes, Judit Salces-Ortiz, Héloise Muller, Nelly Burlet, Sonia Martinez, et al.. An attempt to select non-genetic variation in resistance to starvation and reduced chill coma recovery time in Drosophila melanogaster. Journal of Experimental Biology, Cambridge University Press, 2018, 221 (23), pp.jeb186254. ⟨10.1242/jeb.186254⟩. ⟨hal-01965032⟩

Gabriel Luz Wallau, Cristina Vieira, Élgion Lúcio Silva Loreto. Genetic exchange in eukaryotes through horizontal transfer: connected by the mobilome. Mobile DNA, BioMed Central, 2018, 9 (1), pp.1-16. ⟨10.1186/s13100-018-0112-9⟩. ⟨hal-01965038⟩

Gabriel A.B. Marais, Jean-Michel Gaillard, Cristina Vieira, Ingrid Plotton, Damien Sanlaville, et al.. Sex gap in aging and longevity: can sex chromosomes play a role?. Biology of Sex Differences, BioMed Central, 2018, 9 (1), pp.1-14. ⟨10.1186/s13293-018-0181-y⟩. ⟨hal-01965036⟩

Lain Guio, Cristina Vieira, Josefa González. Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster. Scientific Reports, Nature Publishing Group, 2018, 8 (1), pp.1-10. ⟨10.1038/s41598-018-30491-w⟩. ⟨hal-01965035⟩

Emmanuelle Lerat, Clément Goubert, Sara Guirao-Rico, Miriam Merenciano, Anne-Béatrice Dufour, et al.. Population specific dynamics and selection patterns of transposable element insertions in European natural populations. Molecular Ecology, Wiley, 2018, pp.1-17. ⟨10.1111/mec.14963⟩. ⟨hal-01965027⟩

Emmanuelle Lerat, Marie Fablet, Laurent Modolo, Hélène Lopez-Maestre, Cristina Vieira. TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes. Nucleic Acids Research, Oxford University Press, 2017, 45, pp.13. ⟨10.1093/nar/gkw953⟩. ⟨hal-01524877⟩

Valèria Romero-Soriano, Laurent Modolo, Hélène Lopez-Maestre, Bruno Mugat, Eugénie Pessia, et al.. Transposable Element Misregulation Is Linked to the Divergence between Parental piRNA Pathways in Drosophila Hybrids. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2017, 9 (6), pp.1450 - 1470. ⟨10.1093/gbe/evx091⟩. ⟨hal-01596041⟩

Hélène Lopez-Maestre, Elias A. G. Carnelossi, Vincent Lacroix, Nelly Burlet, Bruno Mugat, et al.. Identification of misexpressed genetic elements in hybrids between Drosophila-related species. Scientific Reports, Nature Publishing Group, 2017, 7, pp.40618. ⟨10.1038/srep40618⟩. ⟨hal-01524879v2⟩

Clément Goubert, Hélène Henri, Guillaume Minard, Claire Valiente Moro, Patrick Mavingui, et al.. High-Throughput Sequencing of Transposable Element Insertions Suggests Adaptive Evolution of the Invasive Asian Tiger Mosquito Towards Temperate Environments. Molecular Ecology, Wiley, 2017, 26 (15), pp.1-14. ⟨10.1111/mec.14184⟩. ⟨hal-01546749⟩

Tristan Lefébure, Claire Morvan, Florian Malard, Clémentine François, Lara Konecny-Dupré, et al.. Less effective selection leads to larger genomes. Genome Research, Cold Spring Harbor Laboratory Press, 2017, 27, pp.1016-1028. ⟨10.1101/gr.212589.116⟩. ⟨hal-01544879v2⟩

C. Goubert, G. Minard, Cristina Vieira, Matthieu Boulesteix. Population genetics of the Asian tiger mosquito Aedes albopictus, an invasive vector of human diseases. Heredity, Nature Publishing Group, 2016, 117 (3), pp.125-34. ⟨10.1038/hdy.2016.35⟩. ⟨hal-02012374⟩

Hélène Lopez-Maestre, Lilia Brinza, Camille Marchet, Janice Kielbassa, Sylvère Bastien, et al.. SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence. Nucleic Acids Research, Oxford University Press, 2016, ⟨10.1093/nar/gkw655⟩. ⟨hal-01352586⟩

P. A. Calatayud, C. Petit, N. Burlet, S. Dupas, N. Glaser, et al.. Is genome size of Lepidoptera linked to host plant range?. Entomologia Experimentalis et Applicata, Wiley, 2016, 159 (3), pp.354-361. ⟨10.1111/eea.12446⟩. ⟨hal-02016410⟩

Valèria Romero-Soriano, Nelly Burlet, Doris Vela, Antonio Fontdevila, Cristina Vieira, et al.. Drosophila Females Undergo Genome Expansion after Interspecific Hybridization. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2016, 8 (3), pp.556-561. ⟨10.1093/gbe/evw024⟩. ⟨hal-01352572⟩

Clément Goubert, Laurent Modolo, Cristina Vieira, Claire Valientemoro, Patrick Mavingui, et al.. De novo assembly and annotation of the Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE from raw genomic reads and comparative analysis with the yellow fever mosquito (Aedes aegypti).. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2015, 7 (4), pp.1192-205. ⟨hal-01227710⟩

C. Biemont, Cristina Vieira. Could interallelic interactions be a key to the epigenetic aspects of fitness-trait inbreeding depression?. Heredity, 2014, 112, pp.219-20. ⟨10.1038/hdy.2013.80⟩. ⟨hal-02072957⟩

Elias Carnelossi, Emmanuelle Lerat, Hélène Henri, Sonia Martinez, Claudia Carareto, et al.. Specific Activation of an I-Like Element in Drosophila Interspecific Hybrids. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2014, 6, pp.1806 - 1817. ⟨10.1093/gbe/evu141⟩. ⟨hal-01526700⟩

Denis Basquin, Anne Spierer, Flora Begeot, Dmitry E Koryakov, Anne-Laure Todeschini, et al.. The Drosophila Su(var)3–7 Gene Is Required for Oogenesis and Female Fertility, Genetically Interacts with piwi and aubergine, but Impacts Only Weakly Transposon Silencing. PLoS ONE, Public Library of Science, 2014, 9 (5), pp.e96802. ⟨10.1371/journal.pone.0096802⟩. ⟨hal-01092623v2⟩

Doris Vela, Antonio Fontdevila, Cristina Vieira, García Guerreiro María Pilar. A Genome-Wide Survey of Genetic Instability by Transposition in Drosophila Hybrids. PLoS ONE, Public Library of Science, 2014, 9, pp.87 - 87. ⟨10.1371/journal.pone.0088992.s005⟩. ⟨hal-01526703⟩

David Roquis, Julie M. J. Lepesant, Emanuel Villafan, Jérôme Boissier, Cristina Vieira, et al.. Exposure to hycanthone alters chromatin structure around specific gene functions and specific repeats in Schistosoma mansoni.. Frontiers in Genetics, Frontiers, 2014, 5, pp.207. ⟨10.3389/fgene.2014.00207⟩. ⟨hal-01112701⟩

Claudia M A Carareto, Eric H Hernandez, Cristina Vieira. Genomic regions harboring insecticide resistance-associated Cyp genes are enriched by transposable element fragments carrying putative transcription factor binding sites in two sibling Drosophila species. Gene, Elsevier, 2014, 537 (1), pp.93-99. ⟨10.1016/j.gene.2013.11.080⟩. ⟨hal-00922703⟩

Marie Fablet, Abdou Akkouche, Virginie Braman, Cristina Vieira. Variable expression levels detected in the Drosophila effectors of piRNA biogenesis. Gene, Elsevier, 2014, 537 (1), pp.149-153. ⟨10.1016/j.gene.2013.11.095⟩. ⟨hal-00922704⟩

Cristina Vieira, Marie Fablet, Emmanuelle Lerat, Matthieu Boulesteix, Rita Rebollo, et al.. A comparative analysis of the amounts and dynamics of transposable elements in natural populations of Drosophila melanogaster and Drosophila simulans.. Journal of Environmental Radioactivity, Elsevier, 2012, 113, pp.83-86. ⟨10.1016/j.jenvrad.2012.04.001⟩. ⟨hal-00763500⟩

Ken Kraaijeveld, Brechtje Zwanenburg, Benjamin Hubert, Cristina Vieira, Sylvia de Pater, et al.. Transposon proliferation in an asexual parasitoid.. Molecular Ecology, Wiley, 2012, 21 (16), pp.3898-3906. ⟨10.1111/j.1365-294X.2012.5582.x⟩. ⟨hal-00850325⟩

Rita Rebollo, Béatrice Horard, Flora Begeot, Marion Delattre, Eric Gilson, et al.. A snapshot of histone modifications within transposable elements in Drosophila wild type strains.. PLoS ONE, Public Library of Science, 2012, 7 (9), pp.1-7. ⟨10.1371/journal.pone.0044253⟩. ⟨hal-00850321⟩

Abdelkader Aïnouche, Mireille Bétermier, Mick Chandler, Richard Cordaux, Gaël Cristofari, et al.. International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories.. Mobile DNA, BioMed Central, 2012, 3 (1), pp.17. ⟨10.1186/1759-8753-3-17⟩. ⟨inserm-00764323⟩

Abdou Akkouche, Rita Rebollo, Nelly Burlet, Caroline Esnault, Sonia Martinez, et al.. tirant, a newly discovered active endogenous retrovirus in Drosophila simulans.. Journal of Virology, American Society for Microbiology, 2012, 86 (7), pp.3675-3681. ⟨10.1128/JVI.07146-11⟩. ⟨hal-00763499⟩

Adriana Granzotto, Fabrício R Lopes, Cristina Vieira, Claudia M A Carareto. Vertical inheritance and bursts of transposition have shaped the evolution of the BS non-LTR retrotransposon in Drosophila.. Molecular Genetics and Genomics, Springer Verlag, 2011, 286 (1), pp.57-66. ⟨10.1007/s00438-011-0629-9⟩. ⟨hal-00850379⟩

A. Granzotto, F.R. Lopes, Cristina Vieira, C.M.A Carareto. Vertical inheritance and bursts of transposition have shaped the evolution of the BS non-LTR retrotransposon in Drosophila. Molecular Genetics and Genomics, Springer Verlag, 2011, 286, pp.57-66. ⟨hal-00698393⟩

Emmanuelle Lerat, Nelly Burlet, Christian Biémont, Cristina Vieira. Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes.. Gene, Elsevier, 2011, 473 (2), pp.100-9. ⟨10.1016/j.gene.2010.11.009⟩. ⟨hal-00850380⟩

Hussein Mortada, Cristina Vieira, Emmanuelle Lerat. Genes devoid of full-length transposable element insertions are involved in development and in the regulation of transcription in human and closely related species.. Journal of Molecular Evolution, Springer Verlag, 2010, 71 (3), pp.180-91. ⟨10.1007/s00239-010-9376-5⟩. ⟨hal-00850383⟩

Rita Rebollo, Béatrice Horard, Benjamin Hubert, Cristina Vieira. Jumping genes and epigenetics: Towards new species.. Gene, Elsevier, 2010, 454 (1-2), pp.1-7. ⟨10.1016/j.gene.2010.01.003⟩. ⟨hal-02552014⟩

Rita Rebollo, Béatrice Horard, Benjamin Hubert, Cristina Vieira. Jumping genes and epigenetics: Towards new species.. Gene, Elsevier, 2010, 454 (1-2), pp.1-7. ⟨10.1016/j.gene.2010.01.003⟩. ⟨hal-00850384⟩

Cristina Vieira, M. Fablet, E. Lerat. Infra- and Transspecific Clues to Understanding the Dynamics of Transposable Elements. genome dyn stab, 2009, --, pp.115-123. ⟨hal-00428338⟩

Adriana Granzotto, Fabrício R Lopes, Emmanuelle Lerat, Cristina Vieira, Claudia M A Carareto. The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes.. BMC Evolutionary Biology, BioMed Central, 2009, 9, pp.174. ⟨10.1186/1471-2148-9-174⟩. ⟨hal-00850397⟩

A. Granzotto, F.R. Lopes, E. Lerat, Cristina Vieira, C.Ma. Carareto. The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes. BMC Evolutionary Biology, BioMed Central, 2009, 9(174), pp.95-148. ⟨hal-00428408⟩

M. Fablet, E. Lerat, R. Rebollo, B. Horard, N. Burlet, et al.. Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila. FASEB Journal, Federation of American Society of Experimental Biology, 2009, 23, pp.54-62. ⟨hal-00428323⟩

M. Deloger, F.M.G. Cavalli, E. Lerat, C. Biémont, M.-F. Sagot, et al.. Identification of expressed transposable element insertions in the sequenced genome of Drosophila melanogaster. Gene, Elsevier, 2009, 439, pp.55-62. ⟨hal-00428351⟩

R. Rebollo, E. Lerat, L. Lopez Kleine, C. Biémont, Cristina Vieira. Losing helena: The extinction of a drosophila line-like element. BMC Genomics, BioMed Central, 2008, 9, pp.1-11. ⟨hal-00428119⟩

C. Chauleur, Cristina Vieira, P. Seffert. [Prophylaxis of thromboembolic disease in obstetrics after the French guidelines publication]. Gynécologie Obstétrique & Fertilité, Elsevier Masson, 2008, 36 (1), pp.23-34. ⟨10.1016/j.gyobfe.2007.07.043⟩. ⟨ujm-00440346⟩

N. Mugnier, Laurent Guéguen, Cristina Vieira, C. Biémont. The heterochromatic copies of the LTR retrotransposons as a record of the genomic events that have shaped the Drosophila melanogaster genome. Gene, Elsevier, 2008, 411, pp.87-93. ⟨hal-00428114⟩

C. Biémont, Cristina Vieira. Mitspieler der Evolution. Spektrum der Wissenschaft, Spektrum der Wissenschaft, 2007, S44, pp.44-49. ⟨hal-00434754⟩

M. Fablet, S. Souames, C. Biémont, Cristina Vieira. Evolutionary Pathways of the tirant LTR Retrotransposon in the Drosophila melanogaster Subgroup of Species. Journal of Molecular Evolution, Springer Verlag, 2007, 64, pp.438-447. ⟨hal-00434598⟩

M. Fablet, R. Rebollo, C. Biémont, Cristina Vieira. The evolution of retrotransposon regulatory regions and its consequences on the Drosophila melanogaster and Homo sapiens host genomes. Gene, Elsevier, 2007, 390, pp.84-91. ⟨hal-00434597⟩

C. Biémont, Cristina Vieira. Junk DNA as an evolutionary force. Nature, Nature Publishing Group, 2006, 443, pp.521-524. ⟨hal-00427901⟩

M. Fablet, J.F. Donald, C. Biémont, Cristina Vieira. Ongoing loss of the tirant transposable element in natural populations of Drosophila simulans. Gene, Elsevier, 2006, 375, pp.54-62. ⟨hal-00427929⟩

C. Biémont, Cristina Vieira. What transposable elements tell us about genome organization and evolution: the case of Drosophila. Cytogenetics and Genome Researchearch, 2005, 110, pp.25-34. ⟨hal-00427833⟩

N. Mugnier, C. Biémont, Cristina Vieira. New regulatory regions of Drosophila 412 retrotransposable element generated by recombination. Molecular Biology and Evolution, Oxford University Press (OUP), 2005, 22, pp.747-757. ⟨hal-00427792⟩

C. Nardon, G. Deceliere, C. Loevenbruck, M. Weiss, Cristina Vieira, et al.. Is genome size influenced by colonization of new environments in dipteran species ?. Molecular Ecology, Wiley, 2005, 14, pp.869-878. ⟨hal-00427794⟩

Cristina Vieira, C. Biémont. Transposable element dynamics in two sibling species: Drosophila melanogaster and Drosophila simulans. Genetica, Springer Verlag, 2004, 120, pp.115-123. ⟨hal-00427674⟩

C. Biémont, Cristina Vieira. L`influence des éléments transposables sur la taille des génomes. Journal- Societe de Biologie, Paris : Société de biologie, 2004, 198, pp.413-417. ⟨hal-00427507⟩

C. Nardon, M. Weiss, Cristina Vieira, C. Biémont. Variation of the genome size estimate with environmental conditions in Drosophila melanogaster. Cytometry - Part A, 2003, 55A, pp.43-49. ⟨hal-00427444⟩

C. Biémont, C. Nardon, G. Deceliere, D. Lepetit, C. Loevenbruck, et al.. Worldwide distribution of transposable element copy number in natural populations of Drosophila simulans. Evolution, Wiley, 2003, 57, pp.159-167. ⟨hal-00427365⟩

Cristina Vieira, C. Nardon, C. Arpin, D. Lepetit, C. Biémont. Evolution of genome size in Drosophila. is the invader`s genome being invaded by transposable elements?. Molecular Biology and Evolution, Oxford University Press (OUP), 2002, 19, pp.1154-1161. ⟨hal-00427308⟩

C. Biémont, Cristina Vieira, N. Borie. Transposable elements and genome evolution of invasive species: the case of Drosophila. Genetics Selection Evolution, BioMed Central, 2001, 33, pp.S107-S120. ⟨hal-00427156⟩

Cristina Vieira, G. Piganeau, C. Biemont. High copy numbers of multiple transposable element families in an Australian population of Drosophila simulans. Genetical Research, 2000, 76, pp.117-119. ⟨hal-00427118⟩

Cristina Vieira, E.G. Pasyukova, Z.B. Zeng, J.B. Hackett, R.F. Lyman, et al.. Genotype-environment interaction for quantitative trait loci affecting life span in Drosophila melanogaster. Genetics, Genetics Society of America, 2000, 154, pp.213-227. ⟨hal-00427111⟩

E.G. Pasyukova, Cristina Vieira, T.F.C. Mackay. Deficiency mapping of quantitative trait loci affecting longevity in Drosophila melanogaster. Genetics, Genetics Society of America, 2000, 156, pp.1129-1146. ⟨hal-00427095⟩

C. Biémont, Cristina Vieira, N. Borie, D. Lepetit. Transposable elements and genome evolution: the case of Drosophila simulans. Genetica, Springer Verlag, 1999, 107, pp.113-120. ⟨hal-00428436⟩

Cristina Vieira, D. Lepetit, S. Dumont, C. Biémont. Wake up of transposable elements following Drosophila simulans worldwide colonization. Molecular Biology and Evolution, Oxford University Press (OUP), 1999, 16, pp.1251-1255. ⟨hal-00428465⟩

Cristina Vieira, P. Aubry, D. Lepetit, C. Biémont. A temperature cline in copy number for 412 but not roo/B104 retrotransposons in populations of Drosophila simulans. Proceedings of the Royal Society B: Biological Sciences, Royal Society, The, 1998, 265, pp.1161-1165. ⟨hal-00428504⟩

N. Junakovic, A. Terrinoni, C. Di Franco, Cristina Vieira, C. Loevenbruck. Accumulation of transposable elements in the heterochromatin and on the Y chromosome of Drosophila simulans and Drosophila melanogaster. Journal of Molecular Evolution, Springer Verlag, 1998, 46, pp.661-668. ⟨hal-00428492⟩

C. Biémont, Cristina Vieira, C. Hoogland, G. Cizeron, C. Loevenbruck, et al.. Maintenance of transposable element copy number in natural populations of Drosophila melanogaster and D-simulans. Genetica, Springer Verlag, 1997, 100, pp.161-166. ⟨hal-00434972⟩

C. Hoogland, Cristina Vieira, C. Biemont. Chromosomal distribution of the 412 retrotransposon in natural populations of Drosophila simulans. Heredity, Nature Publishing Group, 1997, 79, pp.128-134. ⟨hal-00434987⟩

Cristina Vieira, C. Biemont. Transposition rate of the 412 retrotransposable element is independent of copy number in natural populations of Drosophila simulans. Molecular Biology and Evolution, Oxford University Press (OUP), 1997, 14, pp.185-188. ⟨hal-00434996⟩

C. Biémont, A. Tsitrone, Cristina Vieira, C. Hoogland. Transposable element distribution in Drosophila. Genetics, Genetics Society of America, 1997, 147, pp.1997-1999. ⟨hal-00434964⟩

Cristina Vieira. Comportement de rétrotransposons (copia mdg1 gypsy et 412) dans les populations de Drosophila melanogaster et D. simulans. incollection, 1996, --, pp.313-325. ⟨hal-00435023⟩

Cristina Vieira, C. Biémont. Selection against transposable elements in D-simulans and D-melanogaster. Genetical Research, 1996, 68, pp.9-15. ⟨hal-00435041⟩

Cristina Vieira, C. Biémont. Geographical variation in insertion site number of retrotransposon 412 in Drosophila simulans. Journal of Molecular Evolution, Springer Verlag, 1996, 42, pp.443-451. ⟨hal-00435042⟩

V. Mérel, Marie Fablet, M. Boulesteix, Arnaud Estoup, Patricia Gibert, et al.. Transposable Element Dynamics in an Invasive Species. Congrès National des Éléments Transposables (CNET 2018), Jul 2018, Clermont-Ferrand, France. ⟨hal-02786547⟩

Jean-Paul Bravard, Ioan Negrutiu, Natalia del Fatti, Cristina Vieira. Les Ressources. Actes du Colloque de l'Institut Universitaire de France, 2011, Lyon, France. 356 p. ⟨halshs-01315007⟩