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Number of documents

42

Corinne Vacher, Directrice de Recherche, INRAE


Journal articles11 documents

  • Didac Barroso‐bergada, Charlie Pauvert, Jessica Vallance, Laurent Deliere, David Bohan, et al.. Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: strengths and pitfalls: Microbial networks for biomonitoring. Molecular Ecology Resources, Wiley/Blackwell, In press, ⟨10.1111/1755-0998.13302⟩. ⟨hal-03049733⟩
  • Tania Fort, Charlie Pauvert, Amy Zanne, Otso Ovaskainen, Thomas Caignard, et al.. Maternal effects shape the seed mycobiome in Quercus petraea. New Phytologist, Wiley, In press, ⟨10.1111/nph.17153⟩. ⟨hal-03087294⟩
  • Jean Legeay, Claude Husson, Tristan Cordier, Corinne Vacher, Benoit Marçais, et al.. Comparison and validation of Oomycetes metabarcoding primers for Phytophthora high throughput sequencing. Journal of Plant Pathology, Springer, 2019, 101 (3), pp.743-748. ⟨10.1007/s42161-019-00276-9⟩. ⟨hal-02618173⟩
  • Charlie Pauvert, Marc Buee, Valerie Laval, Veronique Edel-Hermann, Laure Fauchery, et al.. Bioinformatics matters: The accuracy of plant and soil fungal community data is highly dependent on the metabarcoding pipeline. Fungal Ecology, Elsevier, 2019, 41, pp.23 - 33. ⟨10.1016/j.funeco.2019.03.005⟩. ⟨hal-02627344⟩
  • Stéphane Derocles, David Bohan, Alex J Dumbrell, James J. N. Kitson, Francois Massol, et al.. Biomonitoring for the 21st Century: Integrating Next-Generation Sequencing Into Ecological Network Analysis. Advances in Ecological Research, Elsevier, 2018, 58, pp.1-62. ⟨10.1016/bs.aecr.2017.12.001⟩. ⟨hal-01713119⟩
  • David Bohan, Corinne Vacher, Alireza Tamaddoni-Nezhad, Alan Raybould, Alex J Dumbrell, et al.. Next-generation global biomonitoring: large-scale, automated reconstruction of ecological networks. Trends in Ecology and Evolution, Elsevier, 2017, 32 (7), pp.477-487. ⟨10.1016/j.tree.2017.03.001⟩. ⟨hal-01606909⟩
  • Thomas Fort, Cécile Robin, Xavier Capdevielle, Laurent Deliere, Corinne Vacher. Foliar fungal communities strongly differ between habitat patches in a landscape mosaic. PeerJ, PeerJ, 2016, 4, 20 p. ⟨10.7717/peerj.2656⟩. ⟨hal-02640391⟩
  • Marie-Laure Desprez-Loustau, Jaime Aguayo, Cyril Dutech, Katherine J. Hayden, Claude Husson, et al.. An evolutionary ecology perspective to address forest pathology challenges of today and tomorrow. Annals of Forest Science, Springer Nature (since 2011)/EDP Science (until 2010), 2016, 73 (1), pp.45-67. ⟨10.1007/s13595-015-0487-4⟩. ⟨hal-01318717⟩
  • A. Coince, T. Cordier, J. Lengellé, E. Defossez, C. Vacher, et al.. Leaf and root-associated fungal assemblages do not follow similar elevational diversity patterns. PLoS ONE, Public Library of Science, 2014, 9 (6), 10 p. ⟨10.1371/journal.pone.0100668⟩. ⟨hal-01143027⟩
  • C. Vacher, Denis Bourguet, Francois Rousset, C. Chevillon, Michael E. Hochberg. High dose refuge strategies and genetically modified crops – reply to Tabashnik et al.. Journal of Evolutionary Biology, Wiley, 2004, 17 (4), pp.913 - 918. ⟨10.1111/j.1420-9101.2004.00730.x⟩. ⟨halsde-00326940⟩
  • C. Vacher, D. Bourguet, Francois Rousset, Christine Chevillon, Michael E. Hochberg. Modelling the spatial configuration of refuges for a sustainable control of pests: a case study of Bt cotton. Journal of Evolutionary Biology, Wiley, 2003, 16 (3), pp.378 - 387. ⟨10.1046/j.1420-9101.2003.00553.x⟩. ⟨halsde-00334046⟩

Conference papers27 documents

  • Tania Fort, Corinne Vacher, Charlie Pauvert, Amy Zanne, Otso Ovaskainen, et al.. Maternal effects shape seed mycobiota in a foundation tree species (Quercus petraea). SFR QuaSav, 2019, NA, France. ⟨hal-02154443⟩
  • Corinne Vacher, Charlie Pauvert, Thomas Fort, Marc Buee, Valerie Laval, et al.. Influence of landscape structure and cropping system on microbial diversity and microbial interactions in vineyards. Séminaire Pôle de Protection des Plantes (CIRAD 3P), Nov 2018, St-Pierre de la Réunion, France. ⟨hal-02787591⟩
  • Charlie Pauvert, Marc Buee, Valerie Laval, Veronique Edel-Hermann, Laure Fauchery, et al.. Its all fun guys: a comparison of bioinformatic pipelines for metabarcoding plant and soil fungal communities. International Phytobiomes Conference 2018, Dec 2018, Montpellier, France. ⟨hal-01938707⟩
  • Marc Buee, Matthieu Barret, Maria Bernard, Didier Debroas, Isabelle Domaizon, et al.. Microbial metacommunity: a METABAR coding approach. 2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France. ⟨hal-01607836⟩
  • Corinne Vacher, Christophe Mougel, Marc Buee, Matthieu Barret. Le phytobiome: concept et potentiel d'utilisation en amélioration des plantes. Conseil scientifique du Département BAP, Feb 2017, Paris, France. ⟨hal-01605029⟩
  • Corinne Vacher. The phyllosphere: microbial jungle at the plant–climate interface. Journées du Métaprogramme MEM, Jan 2017, Paris, France. ⟨hal-01603163⟩
  • Corinne Vacher. Apprendre les réseaux microbiens à partir de données NGS: potentiel d'utilisation en lutte biologique. Réunion du Consortium Biocontrôle, Feb 2017, Paris, France. ⟨hal-01603191⟩
  • Corinne Vacher, Charlie Pauvert. Microbial associations and interactions at the plant-climate interface. Workshop "Réseaux, Invasions et Emergences", CBGP, May 2017, Montpellier, France. ⟨hal-01605337⟩
  • Corinne Vacher. The phyllosphere: microbial jungle at the plant–climate interface. Eawag Spring Series, May 2017, Kastanienbaum, Switzerland. ⟨hal-01605336⟩
  • Corinne Vacher, Matthieu Barret. Table Ronde "Phytobiome". 2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Feb 2017, Paris, France. ⟨hal-01604243⟩
  • Corinne Vacher. Atténuation des effets du changement climatique sur la biodiversité et les services écosystémiques des forêts d'Aquitaine. Réunion du Pôle de Compétitivité XyloFutur, Feb 2016, Bordeaux, France. ⟨hal-01608189⟩
  • Corinne Vacher. Deciphering microbial interactions in the phyllosphere. Séminaires de l'UMR Biogeco, Mar 2016, Bordeaux, France. ⟨hal-01604053⟩
  • Corinne Vacher. Deciphering microbial interactions in the phyllosphere. Groupe de travail "Modélisation" du métaprogramme MEM, 2016, NA, France. ⟨hal-01604056⟩
  • Corinne Vacher. Learning microbial interaction networks from NGS data. Ecole-chercheur Métaprogramme Métaomique des Ecosystèmes Microbiens, Jun 2016, Pont-à-Mousson, France. ⟨hal-01604055⟩
  • Corinne Vacher, Lisa Wingate. Modéliser les couplages forêt-atmosphère-rivière pour prédire la durabilité des forêts-galeries. Rencontre avec les Gestionnaires de la Vallée du Ciron, Apr 2016, Bernos-Beaulac, France. ⟨hal-01604058⟩
  • Corinne Vacher, Virgil Fievet, Boris Jakuschkin, Sarah Ouadah, Cécile Robin, et al.. Deciphering the pathobiome: intra- and interkingdom interactions involving the pathogen Erysiphe alphitoides. 10. International symposium on phyllosphere microbiology, Jul 2015, Ascona, Switzerland. ⟨hal-01607740⟩
  • Corinne Vacher. Foliar microbial communities: from patterns to functions. Séminaires de l'UMR ISPA, Jun 2015, Bordeaux, France. ⟨hal-01602114⟩
  • Corinne Vacher, Jessica Vallance. Monitoring microbial networks: current challenges. Atelier Réseaux Trophiques 2 (ART2) - Reconciling social, economic and ecological complexity in agro-ecosystems, Feb 2015, Paris, France. ⟨hal-01603774⟩
  • Thomas Fort, Cécile Robin, Corinne Vacher. Host species dominates over landscape structure in shaping foliar fungal communities. 10. International symposium on phyllosphere microbiology, Jul 2015, Ascona, Switzerland. ⟨hal-01603775⟩
  • Corinne Vacher, Jean-Benoist Leger, Jean-Jacques Daudin. Clustering methods differ in their ability to detect patterns in ecological networks. Joint 2014 Annual Meeting British Ecological Society and Société Française d’Ecologie (BES & SFE ), Dec 2014, Lille, France. ⟨hal-01604066⟩
  • Corinne Vacher. Investigating microbial networks in the phyllosphere using high-throughput sequencing. Formation "Traitement des données issues des nouvelles techniques de séquençage", Jun 2014, Montpellier, France. ⟨hal-01602087⟩
  • Corinne Vacher. Network science in ecology. Séminaires de l'UMR Mathématiques et Informatique Appliquées, AgroParisTech, Sep 2014, Paris, France. ⟨hal-01604076⟩
  • Corinne Vacher, Jessica Vallance. QIIME Overview. Formation "Traitement des données issues des nouvelles techniques de séquençage", Jun 2014, Montpellier, France. ⟨hal-01602085⟩
  • Corinne Vacher. La phyllosphère des arbres forestiers: un habitat peu exploré mais très peuplé!. Think Tank MétaProgramme MEM INRA, Mar 2013, Paris, France. ⟨hal-01601290⟩
  • Corinne Vacher, Tristan Cordier, Xavier Capdevielle, Olivier Fabreguettes, Marie Laure Desprez Loustau, et al.. La phyllosphère des arbres forestiers: un habitat peu exploré mais très peuplé!. Séminaire AIP Bioressources, Feb 2013, Paris, France. ⟨hal-01603733⟩
  • Corinne Vacher. La phyllosphère des arbres forestiers: un habitat peu exploré mais très peuplé!. Séminaires de l'UMR EDB, Apr 2013, Toulouse, France. ⟨hal-01601292⟩
  • Corinne Vacher. La phyllosphère des arbres forestiers: un habitat peu exploré mais très peuplé!. Séminaires de l'UMR Biogeco, Apr 2013, Bordeaux, France. ⟨hal-01601291⟩

Poster communications1 document

  • Tania Fort, Charlie Pauvert, Thomas Caignard, Matthieu Barret, Stéphane Compant, et al.. Seed mycobiota is influenced by maternal and environmental effects in sessile oak. International Phytobiomes Conference 2018, Dec 2018, Montpellier, France. 2018. ⟨hal-02734943⟩

Book sections2 documents

  • Stéphane A.P. Derocles, David A. Bohan, Alex J. Dumbrell, James J.N. Kitson, François Massol, et al.. Biomonitoring for the 21st century: integrating next-generation sequencing into ecological network analysis. Next Generation Biomonitoring: Part 1, 58, 293 p., 2018, Advances In Ecological Research, 978-0-12-813949-3. ⟨10.1016/bs.aecr.2017.12.001⟩. ⟨hal-02790509⟩
  • Philippe Lemanceau, Matthieu Barret, Sylvie Mazurier, Samuel Mondy, Barbara Pivato, et al.. Plant communication with associated microbiota in the spermosphere, rhizosphere and phyllosphere. How plants communicate with their biotic environment, 82, Academic Press - Elsevier, 2017, Advances in Botanical Research, 978-0-12-801431-8. ⟨10.1016/bs.abr.2016.10.007⟩. ⟨hal-01608302⟩

Reports1 document

  • Corinne Vacher. Métagénomique de la phyllosphère des arbres forestiers (METAPHORE). [Contrat] auto-saisine. 2013. ⟨hal-01601293⟩