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Structural variants detection and de novo genome assembly of a Maize line

 Camille Eché , Clement Birbes , Carole Iampietro , Arnaud Di Franco , Andreea Dreau , et al.
SMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands
Poster de conférence hal-03541316v1

RDA derived Oryza minuta-specific clones to probe genomic conservation across Oryza and introgression into rice (O. sativa L.)

 Junghyun Shim , Olivier Panaud , Clémentine Vitte , Merlyn S. Mendioro , Darshan S. Brar
Euphytica, 2010, 176 (2), pp.269 - 279. ⟨10.1007/s10681-010-0245-5⟩
Article dans une revue istex hal-02664386v1

Sequence analysis of european maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants.

 A. Darracq , Clémentine Vitte , S. Nicolas , J. Duarte , J.P. Pichon , et al.
60th Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France
Poster de conférence hal-04478798v1
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The role of transposable elements on gene expression regulation in maize and its response to drought

 Maud Fagny , Véronique Jamilloux , Johann Joets , Clémentine Vitte
22nd national congress on transposable elements, Jul 2019, Lyon, France
Poster de conférence hal-04330779v1

Identification of key tissue-specific, biological processes through integration of enhancer information in maize gene regulatory networks

 Maud Fagny , Marieke Kuijjer , Maike Stam , Johann Joets , Olivier Turc , et al.
LEPSE invited seminars, Oct 2020, Visiconférence, France
Communication dans un congrès hal-04351597v1

B73 methylome response to low temperature in the light of genome structure

 Clémentine Vitte
Maize chromatin network annual meeting, Mar 2019, Saint Louis (Missouri), United States
Communication dans un congrès hal-04353530v1
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Identification of key tissue-specific, biological processes by integrating enhancer information in maize gene regulatory networks

 Maud Fagny , Marieke Lydia Kuijjer , Maike Stam , Johann J. Joets , Olivier Turc , et al.
2020
Pré-publication, Document de travail hal-02872027v1
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International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories.

 Abdelkader Aïnouche , Mireille Bétermier , Mick Chandler , Richard Cordaux , Gaël Cristofari , et al.
Mobile DNA, 2012, 3 (1), pp.17. ⟨10.1186/1759-8753-3-17⟩
Article dans une revue inserm-00764323v1

Genome-wide hypermethylation of TEs and centromeres following low temperature exposure in B73

 Zeineb Achour , Johann Joets , Martine Leguilloux , Hélène Sellier , Jean-Philippe Pichon , et al.
61st Annual Maize Genetics Conference, Mar 2019, Saint Louis (Missouri), United States
Poster de conférence hal-04353514v1

Low temperature triggers genome-wide hypermethylation of transposable elements and centromeres in maize

 Zeineb Achour , Johann Joets , Martine Leguilloux , Hélène Sellier , Jean-Philippe Pichon , et al.
2023
Pré-publication, Document de travail hal-04305927v1
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Distal cis-regulatory elements regulate tissue-specific water-deficit response

 Maud Fagny , Olivier Turc , Claude Welcker , Anthony Venon , Harry Belcram , et al.
CSHL Network Biology Meeting 2021, Mar 2021, Cold Spring Harbor (NY), United States.
Poster de conférence hal-04347190v1

Spip and Squiq, two novel rice non-autonomous LTR retro-element families related to RIRE3 and RIRE8

 Clémentine Vitte , Cristian Chaparro , Hadi H. Quesneville , Olivier Panaud
Plant Science, 2007, 172 (1), pp.8-19. ⟨10.1016/j.plantsci.2006.07.008⟩
Article dans une revue istex hal-02114377v1
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Identification of Key Tissue-Specific, Biological Processes by Integrating Enhancer Information in Maize Gene Regulatory Networks

 Maud Fagny , Marieke Lydia Kuijjer , Maike Stam , Johann J. Joets , Olivier Turc , et al.
Frontiers in Genetics, 2021, 11, ⟨10.3389/fgene.2020.606285⟩
Article dans une revue hal-03152056v1

Vernalization affects DNA methylation of the VRN-A1 gene in hexaploid wheat

 Abdul Rehman Khan , Isabelle I. Goldringer , Clementine Vitte , Jerome J. Enjalbert
Harbor Asia Conference on Plant Epigenetics, Stress and Evolution, Oct 2012, Suzhou, China
Communication dans un congrès hal-02805450v1

MITE-driven dissemenitation of cis-regulatory elements in the maize genome

 Klaus Von Grafenstein , Abirami Soundiramourtty , Maud Fagny , Karine Alix , Johann Joets , et al.
CNET2022, Jul 2022, Gif-sur-Yvette, France
Communication dans un congrès hal-04478810v1
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Identifying key tissue-specific, biological processes by integrating enhancer information in maize gene regulatory networks

 Maud Fagny , Marieke L. Kuijjer , Maike Stam , Johann Joets , Olivier Turc , et al.
Symposium "Signaling through Chromatin" from molecules to ecosystems, Oct 2023, Grenoble, France.
Poster de conférence hal-04353449v1
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Development of a new high throughput 105K Presence/Absence Variation genotyping array for quantitative genetic studies

 Clément Mabire , Jorge Duarte , Aude Darracq , Ali Pirani , Hélène Rimbert , et al.
60. Maize Genetics Conference, Mar 2018, St Malo, France
Communication dans un congrès hal-02787197v1

Genome-wide hypermethylation of TEs following low temperature exposure in maize

 Zeineb Achour , Johann Joets , Martine Leguilloux , Hélène Sellier , Jean-Philippe Pichon , et al.
Plant and Animal Genomes XXVII, Jan 2019, San Diego (California), United States
Communication dans un congrès hal-04353481v1

Deciphering molecular origin and functional impact of structural variation in maize through genome sequences comparison and integrative analysis of genetic variation, transcriptome and phenotype data.

 J. Joets , S. Coursol , O. Turc , L. Cabrera-Bosquet , M.L. Martin-Magnette , et al.
60th Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France
Poster de conférence hal-04478797v1

Genome-wide hypermethylation of TEs and centromeres following low temperature exposure in maize.

 Zeineb Achour , Johann Joets , Martine Leguilloux , Hélène Sellier , Jean-Philippe Pichon , et al.
Epiplant II, Feb 2019, Strasbourg (FRANCE), France
Communication dans un congrès hal-04478905v1

Cold induces transcriptional and methylation changes in the sensitive line B73.

 Z. Achour , C. Giauffret , H. Sellier , J.P. Pichon , H. Duborjal , et al.
60th Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France
Poster de conférence hal-04478802v1
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Deciphering molecular origin and functional impact of structural variation in maize through genome sequences comparison and integrative analysis of genetic variation, transcriptome and phenotype data

 Johann Joets , Sylvie Coursol , Olivier Turc , Llorenç Cabrera Bosquet , Marie-Laure Martin-Magniette , et al.
60. Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 2018
Poster de conférence hal-02738241v1

Design of high-troughput Presence/Absence Variant genotyping array in maize based on Affymetrix Technology

 Jorge Duarte , Aude Darracq , Hélène Rimbert , Clementine Vitte , Johann Joets , et al.
Colloque EPGV 2018 "Détection, Gestion et Analyse du Polymorphisme des Génomes Végétaux", Oct 2018, Evry, France
Communication dans un congrès hal-02787234v1
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Pervasive G × E interactions shape adaptive trajectories and the exploration of the phenotypic space in artificial selection experiments

 Arnaud Desbiez-Piat , Adrienne Ressayre , Elodie Marchadier , Alicia Noly , Carine Remoue , et al.
Genetics, 2023, 225 (4), pp.iyad186. ⟨10.1093/genetics/iyad186⟩
Article dans une revue hal-04291055v1

Identifying key tissue-specific, biological processes by integrating enhancer information in maize gene regulatory networks

 Maud Fagny , Marieke L. Kuijjer , Maike Stam , Johann Joets , Olivier Turc , et al.
PAG 30, Jan 2023, San Diego (California), United States
Poster de conférence hal-04353912v1
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Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts

 Jean-Tristan Brandenburg , Tristan Mary , Guillem Rigaill , Sarah J. Hearne , Hélène Corti , et al.
PLoS Genetics, 2017, 13 (3), pp.e1006666. ⟨10.1371/journal.pgen.1006666⟩
Article dans une revue hal-01605143v1
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Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants

 Aude Darracq , Clémentine Vitte , Stephane S. Nicolas , Jorge Duarte , Jean-Philippe Pichon , et al.
BMC Genomics, 2018, 19 (1), ⟨10.1186/s12864-018-4490-7⟩
Article dans une revue hal-02625253v1

De novo assembling 19 maize inbred lines of importance for European breeding

 C. Vitte , C. Eché , C. Lampietro , E. Denis , C. Birbes , et al.
63rd Annual Maize Genetics Conference, Mar 2021, Visio conference, United States
Poster de conférence hal-04478806v1

Development of a new high-throughput 105K presence/absence variation genotyping array for quantitative genetic studies.

 C. Mabire , J. Duarte , A. Darracq , A. Piranni , H. Rimbert , et al.
60th Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France
Poster de conférence hal-04478801v1
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De novo assembling 19 maize inbred lines of the European germplasm

 Carole Iampietro , Camille Eché , Clement Birbes , Andreea Dreau , Erwan Denis , et al.
63rd Annual Maize Genetics Meeting, Mar 2021, virtuel, United States
Poster de conférence hal-03539396v1
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