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Number of documents

15

Clémence Frioux


Journal articles8 documents

  • Clémence Frioux, Dipali Singh, Tamas Korcsmaros, Falk Hildebrand. From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes. Computational and Structural Biotechnology Journal, Elsevier, 2020, ⟨10.1016/j.csbj.2020.06.028⟩. ⟨hal-02883309⟩
  • Clémence Frioux, Simon Dittami, Anne Siegel. Using automated reasoning to explore the metabolism of unconventional organisms: a first step to explore host–microbial interactions. Biochemical Society Transactions, Portland Press, 2020, pp.1-19. ⟨10.1042/BST20190667⟩. ⟨hal-02569935⟩
  • Simon Dittami, Erwan Corre, Loraine Brillet-Guéguen, Agnieszka Lipinska, Noé Pontoizeau, et al.. The genome of Ectocarpus subulatus – A highly stress-tolerant brown alga. Marine Genomics, Elsevier, 2020, pp.1-24. ⟨10.1016/j.margen.2020.100740⟩. ⟨hal-02866117⟩
  • Bertille Burgunter-Delamare, Hetty Kleinjan, Clémence Frioux, Enora Fremy, Margot Wagner, et al.. Metabolic Complementarity Between a Brown Alga and Associated Cultivable Bacteria Provide Indications of Beneficial Interactions. Frontiers in Marine Science, Frontiers Media, 2020, 7, pp.1-11. ⟨10.3389/fmars.2020.00085⟩. ⟨hal-02866101⟩
  • Clémence Frioux, Torsten Schaub, Sebastian Schellhorn, Anne Siegel, Philipp Wanko. Hybrid Metabolic Network Completion. Theory and Practice of Logic Programming, Cambridge University Press (CUP), 2018, pp.1-23. ⟨10.1017/S1471068418000455⟩. ⟨hal-01936778⟩
  • Méziane Aite, Marie Chevallier, Clémence Frioux, Camille Trottier, Jeanne Got, et al.. Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models. PLoS Computational Biology, Public Library of Science, 2018, 14 (5), pp.e1006146. ⟨10.1371/journal.pcbi.1006146⟩. ⟨hal-01807842⟩
  • Clémence Frioux, Enora Fremy, Camille Trottier, Anne Siegel. Scalable and exhaustive screening of metabolic functions carried out by microbial consortia. Bioinformatics, Oxford University Press (OUP), 2018, 34 (17), pp.i934 - i943. ⟨10.1093/bioinformatics/bty588⟩. ⟨hal-01871600⟩
  • Julie Laniau, Clémence Frioux, Jacques Nicolas, Caroline Baroukh, Maria-Paz Cortés, et al.. Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks. PeerJ, PeerJ, 2017, 5, pp.e3860. ⟨10.7717/peerj.3860⟩. ⟨hal-01635688⟩

Conference papers4 documents

  • Clémence Frioux, Enora Fremy, Camille Trottier, Anne Siegel. Scalable and exhaustive screening of metabolic functions carried out by microbial consortia. ECCB - 2018 - 17th European Conference on Computational Biology, Sep 2018, Athènes, Greece. pp.i934-i943. ⟨hal-01946860⟩
  • Clémence Frioux, Torsten Schaub, Sebastian Schellhorn, Anne Siegel, Philipp Wanko. Hybrid Metabolic Network Completion. 14th International Conference on Logic Programming and Nonmonotonic Reasoning - LPNMR 2017, Jul 2017, Espoo, Finland. pp.308-321. ⟨hal-01557347⟩
  • Claire Lippold, Camille Trottier, Clémence Frioux, Marie Chevallier, Simon M Dittami, et al.. Toward the study of metabolic functions in algal holobionts. 4ème Colloque de Génomique Environnementale, Sep 2017, Marseille, France. ⟨hal-01576484⟩
  • Marie Chevallier, Méziane Aite, Jeanne Got, Guillaume Collet, Nicolas Loira, et al.. Handling the heterogeneity of genomic and metabolic networks data within flexible workflows with the PADMet toolbox. Jobim 2016 : 17ème Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2016, Lyon, France. ⟨hal-01377844⟩

Preprints, Working Papers, ...3 documents

  • Simon M Dittami, Erwan Corre, Loraine Brillet-Guéguen, Agnieszka Lipinska, Méziane Aite, et al.. The genome of Ectocarpus subulatus -a highly stress-tolerant brown alga. 2019. ⟨hal-02333021⟩
  • Bertille Burgunter-Delamare, Hetty Kleinjan, Clémence Frioux, Enora Fremy, Margot Wagner, et al.. Metabolic complementarity between a brown alga and associated 1 cultivable bacteria provide indications of beneficial interactions. 2019. ⟨hal-02333039⟩
  • Arnaud Belcour, Clémence Frioux, Méziane Aite, Anthony Bretaudeau, Anne Siegel. Metage2Metabo: metabolic complementarity applied to genomes of large-scale microbiotas for the identification of keystone species. 2019. ⟨hal-02395024⟩