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Discovery of candidate KEN-box motifs using Cell Cycle keyword enrichment combined with native disorder prediction and motif conservation

 Sushama Michael , Gilles Travé , Chenna Ramu , Claudia Chica , Toby Gibson
Bioinformatics, 2008, 24 (4), pp.453-457. ⟨10.1093/bioinformatics/btm624⟩
Article dans une revue hal-03406410v1

SUMO Safeguards Somatic and Pluripotent Cell Identities by Enforcing Distinct Chromatin States

 Jack-Christophe Cossec , Ilan Theurillat , Claudia Chica , Sabela Búa Aguín , Xavier Gaume , et al.
Cell Stem Cell, 2018, 23 (5), pp.742-757.e8. ⟨10.1016/j.stem.2018.10.001⟩
Article dans une revue pasteur-02869159v1
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The CovR regulatory network drives the evolution of Group B Streptococcus virulence

 Maria-Vittoria Mazzuoli , Maëlle Daunesse , Hugo Varet , Isabelle Rosinski-Chupin , Rachel Legendre , et al.
PLoS Genetics, 2021, 17 (9), pp.e1009761. ⟨10.1371/journal.pgen.1009761⟩
Article dans une revue pasteur-03349660v1

ELM: the status of the 2010 eukaryotic linear motif resource

 Cathryn Gould , Francesca Diella , Allegra Via , Pål Puntervoll , Christine Gemünd , et al.
Nucleic Acids Research, 2010, 38 (suppl_1), pp.D167-D180. ⟨10.1093/nar/gkp1016⟩
Article dans une revue hal-03406403v1

A new protein linear motif benchmark for multiple sequence alignment software.

 Emmanuel Perrodou , Claudia Chica , Olivier Poch , Toby J Gibson , Julie D Thompson
BMC Bioinformatics, 2008, 9, pp.213. ⟨10.1186/1471-2105-9-213⟩
Article dans une revue hal-00283115v1
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ePeak: from replicated chromatin profiling data to epigenomic dynamics

 Maëlle Daunesse , Rachel Legendre , Hugo Varet , Adrien Pain , Claudia Chica
NAR Genomics and Bioinformatics, 2022, 4 (2), pp.lqac041. ⟨10.1093/nargab/lqac041⟩
Article dans une revue pasteur-03683990v1

Genome Sequence Databases: Types of Data and Bioinformatic Tools

 Ana Gutiérrez-Preciado , Philippe Deschamps , Tom Delmont , Claudia Chica , Nathan A.M. Chrismas , et al.
Reference Module in Biomedical Sciences, Elsevier, 2019, ⟨10.1016/b978-0-12-801238-3.99223-7⟩
Chapitre d'ouvrage hal-02378810v1
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ChIPflow: from raw data to epigenomic dynamics

 Maëlle Daunesse , Rachel Legendre , Hugo Varet , Adrien Pain , Claudia Chica
2022
Pré-publication, Document de travail hal-03254190v2
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Epigenomic signature of accelerated ageing in progeroid Cockayne syndrome

 Clément Crochemore , Claudia Chica , Paolo Garagnani , Giovanna Lattanzi , Steve Horvath , et al.
Aging Cell, 2023, e13959, ⟨10.1111/acel.13959⟩
Article dans une revue pasteur-04220201v1

Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation

 Eva-Maria Willing , Vimal Rawat , Terezie Mandáková , Florian Maumus , Geo Velikkakam James , et al.
Nature Plants, 2015, 1 (2), pp.14023-14028. ⟨10.1038/nplants.2014.23⟩
Article dans une revue hal-01179557v1

Epigenomic signature of the progeroid Cockayne syndrome exposes distinct and common features with physiological ageing

 Clément Crochemore , Claudia Chica , Paolo Garagnani , Giovanna Lattanzi , Steve Horvath , et al.
2021
Pré-publication, Document de travail hal-03255408v1
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SCHNAPPs - Single Cell sHiNy APPlication(s)

 Bernd Jagla , Valentina Libri , Claudia Chica , Vincent Rouilly , Sebastien Mella , et al.
Journal of Immunological Methods, 2021, 499, pp.113176. ⟨10.1016/j.jim.2021.113176⟩
Article dans une revue pasteur-03478264v1
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Comparative epigenomics in the Brassicaceae reveals two evolutionarily conserved modes of PRC2-mediated gene regulation

 Claudia Chica , Alexandra Louis , Hugues Roest Crollius , Vincent Colot , François Roudier
Genome Biology, 2017, 18 (1), pp.1-15. ⟨10.1186/s13059-017-1333-9⟩
Article dans une revue hal-02415743v1
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