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Claude Pasquier

Chargé de recherche au CNRS
50%
Libre accès
14
Documents
Affiliations actuelles
  • 13009
Identifiants chercheurs
Site web
  • https://www.i3s.unice.fr/~cpasquie

Présentation

Claude Pasquier is researcher at French National Center for Scientific Research (CNRS). He received a Ph.D. degree in Computer Science from the University of Nice - Sophia Antipolis (now Université Côte d’Azur), France, in 1994. During his thesis, he explored the use of software engineering paradigms in the field of structured document manipulation. He defined both a frame-based language for representing document models, and a system of context-aware document generation and configuration (cf. Prototype-based programming. Subsequently, he was a postdoctoral researcher at the Biophysics and Bioinformatics Laboratory of the University of Athens, Greece, where he conducted research on protein structure prediction. He held positions at the National Institute for Research in Digital Science and Technology (INRIA) and with Schlumberger, Smart Cards & Terminals division (now Gemalto) where he worked on generative programming. Since 2002 when he joined CNRS, he successively worked at Villefranche Oceanographic Laboratory (LOV), the Institute of Biology Valrose (iBV) and New Caledonia Institute of Exact and Applied Sciences (ISEA) where he addressed topics as diverse as semantic data integration, omics data mining and attributed graph mining. Currently at I3S laboratory, he is conducting research focused on complex network mining that combines computer science and systems biology.

Publications

710081
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Evaluation of annotation strategies using an entire genome sequence

Ioannis Iliopoulos , Sophia Tsoka , Miguel Andrade , Anton Enright , Mark Carroll
Bioinformatics, 2003, 19 (6), pp.717-26. ⟨10.1093/bioinformatics/btg077⟩
Article dans une revue hal-00170772v1
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PRED-CLASS: cascading neural networks for generalized protein classification and genome-wide applications

Claude Pasquier , Vasilis Promponas , Stavros Hamodrakas
Proteins - Structure, Function and Bioinformatics, 2001, 44 (3), pp.361-9. ⟨10.1002/prot.1101⟩
Article dans une revue hal-00170747v1
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A novel tool for the prediction of transmembrane protein topology based on a statistical analysis of the SwissProt database: the OrienTM algorithm

T D Liakopoulos , Claude Pasquier , S J Hamodrakas
Protein Engineering, 2001, 14 (6), pp.387-90
Article dans une revue hal-01154852v1
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An hierarchical artificial neural network system for the classification of transmembrane proteins

Claude Pasquier , Stavros Hamodrakas
Protein Engineering, Design and Selection, 1999, 12 (8), pp.631-634
Article dans une revue hal-00170718v3
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A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: the PRED-TMR algorithm

Claude Pasquier , Vasilis Promponas , Giorgos A. Palaios , J.S Hamodrakas , Stavros J. Hamodrakas
Protein Engineering, Design and Selection, 1999, 12 (5), pp.381-5
Article dans une revue hal-00170724v3
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CoPreTHi: a Web tool which combines transmembrane protein segment prediction methods

Vasilis Promponas , Giorgos Palaios , Claude Pasquier , Ioannis Hamodrakas , Stavros Hamodrakas
In Silico Biology, 1999, 1 (3), pp.159-62
Article dans une revue hal-00170731v3
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A web server to locate periodicities in a sequence

Claude Pasquier , Vassilis Promponas , Nikos Varvayannis , Stavros Hamodrakas
Bioinformatics, 1998, 14 (8), pp.749-50. ⟨10.1093/oxfordjournals.bioinformatics.a011054⟩
Article dans une revue hal-00170781v3

DAM-BIO: Bioinformatics internet workbench for protein analysis. New modules and applications to biological problems

Theodore Liakopoulos , N. Harkiolakis , Vassilis Promponas , Claude Pasquier , Ioannis Hamodrakas
23rd conference of the Hellenic Society for Biological Sciences, May 2001, Chios, Greece
Communication dans un congrès hal-01152110v1

PRED-CLASS: Bioinformatics software for generalized protein classification and genome-wide applications

Vasilis J Promponas , Claude Pasquier , Stavros J. Hamodrakas
23rd conference of the Hellenic Society for Biological Sciences, May 2001, Chios Island, Greece
Communication dans un congrès hal-04411117v1

A workbench for computational analysis of protein sequence and structure on the Internet

Theodore Liakopoulos , Giorgos Palaios , Vasilis Promponas , Ioannis Hamodrakas , Claude Pasquier
22nd Conference of the Hellenic Society for Biological Sciences, May 2000, Skiathos, Greece
Communication dans un congrès hal-01152111v1

OrienTM: A novel method to predict transmembrane protein topology

Theodore Liakopoulos , Claude Pasquier , Stavros Hamodrakas
21st conference of the Hellenic Society for Biological Sciences, May 1999, Syros, Greece
Communication dans un congrès hal-01152113v1

PRED-TMR2: An hierarchical neural network to classify proteins as transmembrane and a novel method to predict transmembrane segments

Claude Pasquier , Vassilis Promponas , Giorgos Palaios , Ioannis Hamodrakas , Stavros Hamodrakas
21st conference of the Hellenic Society for Biological Sciences, May 1999, Syros, Greece
Communication dans un congrès hal-01152112v1

A web interface for FT: a tool dedicated to the study of periodicities in sequences

Claude Pasquier , Vassilis Promponas , Nikos Varvayannis , Stavros Hamodrakas
20th conference of the Hellenic Society for Biological Science, May 1998, Samos, Greece
Communication dans un congrès hal-01152114v1

CoPreTHi: a program to combine the results of transmembrane protein segment prediction methods

Vassilis Promponas , Giorgos Palaios , Claude Pasquier , Ioannis Hamodrakas , Stavros Hamodrakas
20th conference of the Hellenic Society for Biological Sciences, May 1998, Samos, Greece
Communication dans un congrès hal-01152115v1