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    Nombre de documents

    45

    Claude Pasquier


    Article dans une revue18 documents

    • Claude Pasquier, Julien Gardès. Prediction of miRNA-disease associations with a vector space model. Scientific Reports, Nature Publishing Group, 2016, 6, pp.27036. <10.1038/srep27036>. <hal-01324962>
    • Claude Pasquier, Frédéric Flouvat, Jérémy Sanhes, Nazha Selmaoui-Folcher. Attributed graph mining in the presence of automorphism. Knowledge and Information Systems (KAIS), Springer, 2016, <10.1007/s10115-016-0953-9>. <hal-01311684>
    • Claude Pasquier, Jérémy Sanhes, Frédéric Flouvat, Nazha Selmaoui-Folcher. Frequent Pattern Mining in Attributed Trees: algorithms and applications. Knowledge and Information Systems (KAIS), Springer, 2015, 46 (3), pp.491-514. <10.1007/s10115-015-0831-x>. <hal-01154854>
    • Claude Pasquier, Mathilde Clément, Aviv Dombrovsky, Stéphanie Penaud, Martine Da Rocha, et al.. Environmentally selected aphid variants in clonality context display differential patterns of methylation in the genome. PLoS ONE, Public Library of Science, 2013, 9 (12), pp.e115022. <hal-01151509>
    • Nicolas Pasquier, Claude Pasquier, Laurent Brisson, Martine Collard. Mining gene expression data using domain knowledge. International Journal of Software and Informatics (IJSI), ISCAS, 2008, 2 (2), pp.215-231. <hal-01154861>
    • Ricardo Martinez, Nicolas Pasquier, Claude Pasquier. GenMiner: mining non-redundant association rules from integrated gene expression data and annotations. Bioinformatics, Oxford University Press (OUP), 2008, 24 (22), pp.2643-44. <hal-01154857>
    • Claude Pasquier. Biological data integration using Semantic Web technologies. Biochimie, Elsevier, 2008, 90 (4), pp.584-94. <10.1016/j.biochi.2008.02.007>. <hal-00362021>
    • Ricardo Martinez, Nicolas Pasquier, Claude Pasquier, Martine Collard, Lucero Lopez-Perez. Co-expressed Gene Groups Analysis (CGGA): An Automatic Tool for the Interpretation of Microarray Experiments. Journal of Integrative Bioinformatics, Informationsmanagement in der Biotechnologie e.V. (IMBio e.V.), 2006, 3 (12), pp.1-12. <hal-00172501>
    • Claude Pasquier, Fabrice Girardot, Karim Jevardat de Fombelle, Richard Christen. THEA: ontology-driven analysis of microarray data. Bioinformatics, Oxford University Press (OUP), 2004, 20 (16), pp.2636-43. <10.1093/bioinformatics/bth295>. <hal-00170450>
    • Ioannis Iliopoulos, Sophia Tsoka, Miguel Andrade, Anton Enright, Mark Carroll, et al.. Evaluation of annotation strategies using an entire genome sequence. Bioinformatics, Oxford University Press (OUP), 2003, 19 (6), pp.717-26. <10.1093/bioinformatics/btg077>. <hal-00170772>
    • Didier Parigot, Carine Courbis, Pascal Degenne, Alexandre Fau, Claude Pasquier, et al.. Aspect and XML-oriented Semantic Framework Generator: SmartTools. Electronic Notes in Theoretical Computer Science, Elsevier, 2002, 65 (3), pp.97-116. <10.1016/S1571-0661(04)80429-8>. <hal-00172776>
    • Isabelle Attali, Carine Courbis, Pascal Degenne, Alexandre Fau, Didier Parigot, et al.. SmartTools: A Generator of Interactive Environments Tools. Electronic Notes in Theoretical Computer Science, Elsevier, 2001, 44 (2), pp.225-231. <10.1016/S1571-0661(04)80929-0>. <hal-00172773>
    • T D Liakopoulos, Claude Pasquier, S J Hamodrakas. A novel tool for the prediction of transmembrane protein topology based on a statistical analysis of the SwissProt database: the OrienTM algorithm. Protein Engineering, 2001, 14 (6), pp.387-90. <hal-01154852>
    • Claude Pasquier, Vasilis Promponas, Stavros Hamodrakas. PRED-CLASS: cascading neural networks for generalized protein classification and genome-wide applications. Proteins - Structure, Function and Bioinformatics, Wiley, 2001, 44 (3), pp.361-9. <10.1002/prot.1101>. <hal-00170747>
    • Vasilis Promponas, Giorgos Palaios, Claude Pasquier, Ioannis Hamodrakas, Stavros Hamodrakas. CoPreTHi: a Web tool which combines transmembrane protein segment prediction methods. In Silico Biology, IOS Press, 1999, 1 (3), pp.159-62. <hal-00170731v2>
    • Claude Pasquier, Vasilis Promponas, Giorgos Palaios, Ioannis Hamodrakas, Stavros Hamodrakas. A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: the PRED-TMR algorithm. protein engineering Design and Selection / protein engineering Design & Selection, 1999, 12 (5), pp.381-5. <hal-00170724v2>
    • Claude Pasquier, Stavros Hamodrakas. An hierarchical artificial neural network system for the classification of transmembrane proteins. protein engineering Design and Selection / protein engineering Design & Selection, 1999, 12 (8), pp.631-4. <http://peds.oxfordjournals.org/content/12/8/631.full>. <hal-00170718v2>
    • Claude Pasquier, Vassilis Promponas, Nikos Varvayannis, Stavros Hamodrakas. A web server to locate periodicities in a sequence. Bioinformatics, Oxford University Press (OUP), 1998, 14 (8), pp.749-50. <http://bioinformatics.oxfordjournals.org/content/14/8/749.long>. <hal-00170781v2>

    Communication dans un congrès26 documents

    • Claude Pasquier, Frédéric Flouvat, Jérémy Sanhes, Nazha Selmaoui-Folcher. Extraction de motifs dans des graphes orientés attribués en présence d’automorphisme. 14e Conférence Francophone sur l'Extraction et la Gestion des Connaissances (EGC'14), Jan 2014, Rennes, France. <hal-01151511>
    • Frédéric Flouvat, Jérémy Sanhes, Claude Pasquier, Nazha Selmaoui-Folcher, Jean-François Boulicaut. Improving pattern discovery relevancy by deriving constraints from expert models. Torsten Schaub, Gerhard Friedrich, Barry O'Sullivan. European Conference on Artificial Intelligence (ECAI'2014), Aug 2014, Prague, Czech Republic. Frontiers in Artificial Intelligence and Applications, 263, pp.327 - 332, <10.3233/978-1-61499-419-0-327>. <hal-01151514>
    • Ronnie Alves, Claude Pasquier, Nicolas Pasquier. The Pervasiveness of Machine Learning in Omics Science: Foundations, Methods and Applications. ECML/PKDD'2014 International Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases Tutorial T3, Sep 2014, Nancy, France. <http://ecmlpkdd2014.loria.fr/>. <hal-01330594>
    • Frédéric Flouvat, Jérémy Sanhes, Claude Pasquier, Nazha Selmaoui-Folcher, Jean-François Boulicaut. Les modèles des experts au service de l'extraction de motifs pertinents. Reconnaissance de Formes et Intelligence Artificielle (RFIA) 2014, Jun 2014, ROUEN, France. 2014. <hal-00989223>
    • Claude Pasquier, Jérémy Sanhes, Frédéric Flouvat, Nazha Selmaoui-Folcher. Frequent Pattern Mining in Attributed trees. Pei, Jian and Tseng, VincentS. and Cao, Longbing and Motoda, Hiroshi and Xu, Guandong. 17th Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD'13), Apr 2013, Gold Coast, Australia. Lecture Notes in Computer Science, 7818, pp.26-37, Advances in Knowledge Discovery and Data Mining. <10.1007/978-3-642-37453-1_3>. <hal-01151513>
    • Claude Pasquier, Jérémy Sanhes, Frédéric Flouvat, Nazha Selmaoui-Folcher. Extraction de motifs fréquents dans des arbres attribués. 13e Conférence Francophone sur l'Extraction et la Gestion des Connaissances (EGC'13), Jan 2013, Toulouse, France. <hal-01151512>
    • Jérémy Sanhes, Frédéric Flouvat, Nazha Selmaoui-Folcher, Claude Pasquier, Jean-François Boulicaut. Weighted Path as a Condensed Pattern in a Single Attributed DAG. 23rd International Joint Conference on Artificial Intelligence (IJCAI'13), Sep 2013, Beijing, China. <hal-01151561>
    • Jérémy Sanhes, Frédéric Flouvat, Claude Pasquier, Nazha Selmaoui-Folcher, Jean-François Boulicaut. Extraction de motifs condensés dans un unique graphe orienté acyclique attribué. 13e Conférence Francophone sur l'Extraction et la Gestion des Connaissances (EGC'13), Jan 2013, Toulouse, France. <hal-01151510>
    • Claude Pasquier. Single Document Keyphrase Extraction Using Sentence Clustering and Latent Dirichlet Allocation. 5th International Workshop on Semantic Evaluation (SemEval '10), Jul 2010, Uppsala, Sweden. <hal-01151516>
    • Claude Pasquier, Ricardo Martinez, Nicolas Pasquier. Mining association rule bases from integrated genomic data and annotations. Sth International Conference on Computational Intelligence Methods for Bioinformatics and Biostatistics (CIBB'09), Oct 2009, Genova, Italy. <hal-01154860>
    • Ricardo Martinez, Claude Pasquier, Nicolas Pasquier. GenMiner: mining informative association rules from genomic data. IEEE International Conference on Bioinformatics and Biomedicine (BIBM'07), Nov 2007, Silicon Valley, United States. <hal-01154856>
    • Ricardo Martinez, Nicolas Pasquier, Claude Pasquier, Lucero Lopez-Perez. Interpreting microarray experiments via co-expressed gene groups analysis (CGGA). 9th International Conference of Discovery Science (DS'06), Oct 2006, Barcelona, Spain. <hal-01154858>
    • Ricardo Martinez, Nicolas Pasquier, Claude Pasquier, Martine Collard, Lucero Lopez-Perez. Analyse des groupes de gènes co-exprimés (AGGC) : un outil automatique pour l’interpretation des expériences de biopuces. 13ème Rencontres de la Société Francophone de Classification (SFC’06), Sep 2006, Metz, France. <hal-01151505>
    • Claude Pasquier, Richard Christen. Analysis of microarray data with THEA. Integrative Post-Genomics (IPG'06), Nov 2006, Lyon, France. <hal-01151506>
    • Theodore Liakopoulos, N. Harkiolakis, Vassilis Promponas, Claude Pasquier, Ioannis Hamodrakas, et al.. DAM-BIO: Bioinformatics internet workbench for protein analysis. New modules and applications to biological problems. 23rd conference of the Hellenic Society for Biological Sciences, May 2005, Chios, Greece. <hal-01152110>
    • Santosh Anand, Richard Christen, Claude Pasquier. Distributed BLAST with ProActive. 1st Grid PlugTest, Oct 2005, Sophia Antipolis, France. <hal-01151508>
    • Ricardo Martinez, Richard Christen, Claude Pasquier, Nicolas Pasquier. Exploratory analysis of cancer SAGE data. 9th European Conference on Principles and Practice of Knowledge Discovery in Databases (PKDD'05), Discovery Challenge, Oct 2005, Porto, Portugal. <hal-01154853>
    • Isabelle Attali, Carine Courbis, Pascal Degenne, Alexandre Fau, Joël Fillon, et al.. SmartTools: A Development Environment Generator based on XML Technologies. ICSE Workshop on XML Technologies and Software Engineering, May 2001, Toronto, Canada. <hal-01151517>
    • Claude Pasquier, Laurent Théry. A distributed editing environment for XML documents. 1st ECOOP Workshop on XML and Object Technology, Jun 2000, Sophia Antipolis, France. <hal-00362451>
    • Theodore Liakopoulos, Giorgos Palaios, Vasilis Promponas, Ioannis Hamodrakas, Claude Pasquier, et al.. A workbench for computational analysis of protein sequence and structure on the Internet. 22nd Conference of the Hellenic Society for Biological Sciences, May 2000, Skiathos, Greece. 2000. <hal-01152111>
    • Theodore Liakopoulos, Claude Pasquier, Stavros Hamodrakas. OrienTM: A novel method to predict transmembrane protein topology. 21st conference of the Hellenic Society for Biological Sciences, May 1999, Syros, Greece. 1999. <hal-01152113>
    • Claude Pasquier, Vassilis Promponas, Giorgos Palaios, Ioannis Hamodrakas, Stavros Hamodrakas. PRED-TMR2: An hierarchical neural network to classify proteins as transmembrane and a novel method to predict transmembrane segments. 21st conference of the Hellenic Society for Biological Sciences, May 1999, Syros, Greece. 1999. <hal-01152112>
    • Vassilis Promponas, Giorgos Palaios, Claude Pasquier, Ioannis Hamodrakas, Stavros Hamodrakas. CoPreTHi: a program to combine the results of transmembrane protein segment prediction methods. 20th conference of the Hellenic Society for Biological Sciences, May 1998, Samos, Greece. 1998. <hal-01152115>
    • Claude Pasquier, Vassilis Promponas, Nikos Varvayannis, Stavros Hamodrakas. A web interface for FT: a tool dedicated to the study of periodicities in sequences. 20th conference of the Hellenic Society for Biological Science, May 1998, Samos, Greece. 1998. <hal-01152114>
    • Claude Pasquier. BIBLE: a system for Design and Management of Context-Controlled Documents. First International Conference on Principles of Document Processing, 1992, Washington DC, United States. <hal-01154855>
    • Claude Pasquier. Projet d'utilisation de la norme ODA à la Caisse des Dépôts et Consignations. Échange et génération de documents. colloque Gestion des Documents Electroniques, Dec 1991, Caen, France. <hal-01151515>

    Chapitre d'ouvrage1 document

    • Claude Pasquier. Applying Semantic Web technologies to biological data integration and visualization. Data Management in Semantic Web, 2011, 978-1-61122-862-5. <hal-01151507>