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Perturbations in networks

 Claire Lesieur
IXXI-annual seminar (Institut rhônalpin des systèmes complexes), May 2015, Lyon, France
Communication dans un congrès hal-01974600v1
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A computational methodology to diagnose sequence-variant dynamic perturbations by comparing atomic protein structures

 Lorenza Pacini , Claire Lesieur
Bioinformatics, 2021, ⟨10.1093/bioinformatics/btab736⟩
Article dans une revue hal-03428663v1

Protein structural robustness to mutations: an in silico investigation

 Mounia Achoch , Rodrigo Dorantes-Gilardi , Chris Wymant , Giovanni Feverati , Kavé Salamatian , et al.
Physical Chemistry Chemical Physics, 2016, Phys. Chem. Chem. Phys., 16, pp.13770-13780. ⟨10.1039/C5CP06091E⟩
Article dans une revue hal-01237924v1

Exploring Allosteric Pathways of a V-Type Enzyme with Dynamical Perturbation Networks

 Aria Gheeraert , Lorenza Pacini , Victor Batista , Laurent Vuillon , Claire Lesieur , et al.
Journal of Physical Chemistry B, 2019, 123 (16), pp.3452-3461. ⟨10.1021/acs.jpcb.9b01294⟩
Article dans une revue hal-02134286v1
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Connected Component Analysis of Dynamical Perturbation Contact Networks

 Aria Gheeraert , Claire Lesieur , Victor S Batista , Laurent Vuillon , Ivan Rivalta
Journal of Physical Chemistry B, 2023, 127 (35), pp.7571-7580. ⟨10.1021/acs.jpcb.3c04592⟩
Article dans une revue hal-04278363v1

Proteins: an example of supervised dynamics

 Lorenza Pacini , Laëtitia Bourgeat , Rodrigo Dorantes-Gilardi , Laurent Vuillon , Claire Lesieur
PhysChem, Feb 2019, Perth, Australia
Communication dans un congrès hal-02404550v1
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Protein subunit association: NOT a social network

 Mounia Achoch , Giovanni Feverati , Laurent Vuillon , Kavé Salamatian , Claire Lesieur
Theoretical Approaches to Bioinformation systems, Sep 2013, belgrade, Serbia
Communication dans un congrès hal-01191690v1
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Experimental protein Molecular Dynamics: Broadband Dielectric Spectroscopy coupled with nanoconfinement

 Laëtitia Bourgeat , Anatoli Serghei , Claire Lesieur
Scientific Reports, 2019, 9, pp.17988 (2019). ⟨10.1038/s41598-019-54562-8⟩
Article dans une revue hal-02404528v1
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Cross-Talk Between Intramolecular and Intermolecular Amino Acid Networks Orchestrates the Assembly of the Cholera Toxin B Pentamer via the Residue His94

 Mounia Achoch , Giovanni Feverati , Kave Salamatian , Laurent Vuillon , Claire Lesieur
International Conference on Advanced Intelligent Systems for Sustainable Development ; AI2SD 2022, May 2022, Rabat, Morocco. pp.391 - 404, ⟨10.1007/978-3-031-35248-5_35⟩
Communication dans un congrès hal-04278362v1

Analysis of Nanoconfined Protein Dielectric Signals Using Charged Amino Acid Network Models

 Lorenza Pacini , Laetitia Bourgeat , Anatoli Serghei , Claire Lesieur
Australian Journal of Chemistry, 2020, 73 (8), pp.803. ⟨10.1071/CH19502⟩
Article dans une revue hal-03097310v1
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CHOLERA TOXIN B SUBUNITS ASSEMBLE INTO PENTAMERS- PROPOSITION OF A FLY-CASTING MECHANISM

 Jihad Zrimi , Alicia Ng Ling , Ernawati Giri-Rachman Arifin , Giovanni Feverati , Claire Lesieur
PLoS ONE, 2010, 5 (12), pp.e15347. ⟨10.1371/journal.pone.0015347⟩
Article dans une revue hal-00704996v1

Proteins: Natural “SMART” material

 Claire Lesieur
Workshop on proteins fibers: from pathology to nanomaterial, Jun 2015, Lyon, France
Communication dans un congrès hal-01974650v1

In proteins, the structural responses of a position to mutation rely on the Goldilocks principle: not too many links, not too few

 Rodrigo Dorantes-Gilardi , Laëtitia Bourgeat , Lorenza Pacini , Laurent Vuillon , Claire Lesieur
Physical Chemistry Chemical Physics, 2018, 20 (39), pp.25399 - 25410. ⟨10.1039/C8CP04530E⟩
Article dans une revue hal-01921198v1

From local to global changes in proteins: a network view

 Laurent Vuillon , Claire Lesieur
Current Opinion in Structural Biology, 2015, 31, pp.1 - 8. ⟨10.1016/j.sbi.2015.02.015⟩
Article dans une revue hal-01921161v1
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Mapping Function from Dynamics: Future Challenges for Network-Based Models of Protein Structures

 Lorenza Pacini , Rodrigo Dorantes-Gilardi , Laurent Vuillon , Claire Lesieur
Frontiers in Molecular Biosciences, 2021, 8, ⟨10.3389/fmolb.2021.744646⟩
Article dans une revue hal-03428669v1

Topology Results on of Oligomeric Proteins

 Claire Lesieur , Laurent Vuillon
Allostery. Methods in Molecular Biology, pp.113-135, 2021, ⟨10.1007/978-1-0716-1154-8_8⟩
Chapitre d'ouvrage hal-03096163v1
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Experimental diagnostic of sequence-variant dynamic perturbations revealed by broadband dielectric spectroscopy

 Laëtitia Bourgeat , Lorenza Pacini , Anatoli Serghei , Claire Lesieur
Structure, 2021, ⟨10.1016/j.str.2021.05.005⟩
Article dans une revue hal-03428657v1
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A protocol to measure slow protein dynamics of the cholera toxin B pentamers using broadband dielectric spectroscopy

 Laetitia Bourgeat , Lorenza Pacini , Anatoli Serghei , Claire Lesieur
STAR Protocols, 2022, 3 (3), pp.101561. ⟨10.1016/j.xpro.2022.101561⟩
Article dans une revue hal-03814967v1

beta-Strand Interfaces of Non-Dimeric Protein Oligomers are Characterized by Scattered Charge Residues Pattern

 Giovanni Feverati , Mounia Achoch , Jihad Zrimi , Laurent Vuillon , Claire Lesieur
PLoS ONE, 2012, 7 (4), pp.e32558
Article dans une revue hal-00704977v1

Nanoconfinement and Broadband Dielectric Spectroscopy: a novel experimental approach to assess the set of alternative conformations functionally robust, adopted by a protein

 Laëtitia Bourgeat , Anatoli Serghei , Claire Lesieur
PhysChem, Feb 2019, Perth, Australia
Communication dans un congrès hal-02133336v1

What impact to expect on a whole protein from geometrical changes produced by local amino acid side chain perturbation (in silico amino acid mutation): resilience and innovation

 Claire Lesieur
R. Stephen Berry Tribute Symposium, Jun 2015, Telluride, United States
Communication dans un congrès hal-01974652v1
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Induced Perturbation Network and tiling for modeling the L55P Transthyretin amyloid fiber

 Lorenza Pacini , Laurent Vuillon , Claire Lesieur
Procedia Computer Science, 2020, 178, pp.8-17. ⟨10.1016/j.procs.2020.11.002⟩
Article dans une revue hal-03428679v1

SYMMETRIZATION: RANKING AND CLUSTERING IN PROTEIN INTERFACES

 Giovanni Feverati , Claire Lesieur , Laurent Vuillon
International Book Series "Information Science and Computing", Jul 2012, Varna, Bulgaria. pp.not yet available
Communication dans un congrès hal-00705720v1
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Network-based Analysis of Transthyretin Variants

 Lorenza Pacini , Claire Lesieur , Laurent Vuillon
PhysChem2019 Conference, Feb 2019, Perth, Australia
Poster de conférence hal-02404538v1
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GCAT: A network model of mutational influences between amino acid positions in PSD95pdz3

 Lorenza Pacini , Claire Lesieur
Frontiers in Molecular Biosciences, 2022, 9, pp.1035248. ⟨10.3389/fmolb.2022.1035248⟩
Article dans une revue hal-03845107v1

Analysis of Nanoconfined Protein Dielectric Signals Using Charged Amino Acid Network Models

 Lorenza Pacini , Laetitia Bourgeat , Anatoli Serghei , Claire Lesieur
Australian Journal of Chemistry, 2020, 73 (8), pp.803. ⟨10.1071/CH19502⟩
Article dans une revue hal-03060094v1

Oligomeric Interfaces Under the Lens: Gemini

 Giovanni Feverati , Claire Lesieur
PLoS ONE, 2010, pp.PLoS ONE 5(3): e9897. ⟨10.1371/journal.pone.0009897⟩
Article dans une revue hal-00612243v1
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