PASTEC: an automatic transposable element classification tool
Claire Hoede
,
Sandie Arnoux
,
Mark Moissette
,
Timothée Chaumier
,
Olivier Inizan
,
et al.
Article dans une revue
hal-02639360v1
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aes, the gene encoding the esterase B in Escherichia coli, is a powerful phylogenetic marker of the species.
Mathilde Lescat
,
Claire Hoede
,
Olivier Clermont
,
Louis Garry
,
Pierre Darlu
,
et al.
Article dans une revue
inserm-00663545v1
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Human Adipose-Derived Stem Cells Expanded Under Ambient Oxygen Concentration Accumulate Oxidative DNA Lesions and Experience Procarcinogenic DNA Replication Stress
Rémy Bétous
,
Marie-Laure Renoud
,
Claire Hoede
,
Ignacio González
,
Natalie Jones
,
et al.
Article dans une revue
hal-01604404v1
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Impact of amoxicillin therapy on pre-weaned calves intestinal microbiota and its resistome
Thibault Destanque
,
Tony Rochegüe
,
Joanna Fourquet
,
Marisa Haenni
,
Jean-Yves Madec
,
et al.
10th FEMS Congress of European Microbiologists , Jul 2023, Hambourg, Germany
Poster de conférence
anses-04276223v1
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The benefits of long read HiFi sequencing for metabarcoding analysis
Adrien Castinel
,
Jean Mainguy
,
Sylvie Combes
,
Carole Iampietro
,
Christine Gaspin
,
et al.
PACBIO DISCOVERIES ROADSHOW PARIS , PACBIO, May 2022, Paris, France
Communication dans un congrès
hal-03740586v1
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metagWGS: a workflow to analyse short and long HiFi metagenomic reads
Joanna Fourquet
,
Maïna Vienne
,
Jean Mainguy
,
Vincent Darbot
,
Pierre Martin
,
et al.
ECCB2022 , Sep 2022, Sitges, Spain
Poster de conférence
hal-03788263v1
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REPET
Hadi Quesneville
,
Timothée Flutre
,
Olivier Inizan
,
Claire Hoede
,
Elodie Duprat
,
et al.
2010
Logiciel
hal-02820937v1
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Impact des processus de mutation et de recombinaison sur la diversité génomique au sein de l’espèce Escherichia coli
Claire Hoede
Génétique. Université Paris 7 - Denis Diderot, 2010. Français.
⟨NNT : ⟩
Thèse
tel-01621655v2
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Intracellular Salmonella Paratyphi A is motile and differs in the expression of flagella-chemotaxis, SPI-1 and carbon utilization pathways in comparison to intracellular S. Typhimurium
Helit Cohen
,
Claire Hoede
,
Felix Scharte
,
Charles Coluzzi
,
Emiliano Cohen
,
et al.
Article dans une revue
hal-03690615v1
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Phylodynamic Study of the Conserved RNA Structure Encompassing the Hemagglutinin Cleavage Site Encoding Region of H5 and H7 Low Pathogenic Avian Influenza Viruses
Gabriel Dupré
,
Claire Hoede
,
Thomas Figueroa
,
Pierre Bessière
,
Stéphane Bertagnoli
,
et al.
Article dans une revue
hal-03440020v1
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metagWGS : a workflow to analyse short or long HiFi metagenomic reads
Joanna Fourquet
,
Maïna Vienne
,
Jean Mainguy
,
Vincent Darbot
,
Pierre Martin
,
et al.
Bioinfo Biosta Genotoul day , Dec 2022, Castanet Tolosan, France
Communication dans un congrès
hal-03944382v1
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Selection Acts on DNA Secondary Structures to Decrease Transcriptional Mutagenesis
Claire Hoede
,
Erick Denamur
,
Olivier Tenaillon
Article dans une revue
hal-03612432v1
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RNAbrowse: RNA-Seq de novo assembly results browser
Jérôme J. Mariette
,
Céline Noirot
,
Ibouniyamine Nabihoudine
,
Philippe Bardou
,
Claire Hoede
,
et al.
2014
Logiciel
hal-02795847v1
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Use cases and improvements of REPET package : pipeline and tools to identify and annotate TEs in genomic sequences
Véronique Jamilloux
,
Olivier Inizan
,
Sandie Arnoux
,
Timothée Flutre
,
Claire Hoede
,
et al.
17. Congrès National des Elements Transposables , Jul 2011, Lyon, France. 2011
Poster de conférence
hal-01190364v1
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Host tropism and host-pathogen interplay of typhoidal Salmonella enterica
Ludovic Mallet
,
Claire Hoede
,
Franck Cerruti
,
Annick Moisan
,
Christine Gaspin
,
et al.
JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques , Jul 2017, Lille, France.
, 2017, Journées Ouvertes en Biologie, Informatique et Mathématiques. JOBIM 2017
Poster de conférence
hal-01603254v1
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Strengths and limits of long read metabarcoding
Jean Mainguy
,
Adrien Castinel
,
Olivier Bouchez
,
Sylvie Combes
,
Carole Iampietro
,
et al.
ECCB 2022 , Sep 2022, Meliá Sitges, Spain
Poster de conférence
hal-03848228v1
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Widely rhythmic transcriptome in Calanus finmarchicus during the high Arctic summer solstice period
Laura Payton
,
Lukas Hüppe
,
Céline Noirot
,
Claire Hoede
,
Kim Last
,
et al.
Article dans une revue
hal-03414451v1
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Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria
Franck Cerutti
,
Ludovic Mallet
,
Anaïs Painset
,
Claire Hoede
,
Annick Moisan
,
et al.
Article dans une revue
pasteur-01740259v1
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Links between transcription, environmental adaptation and gene variability in escherichia coli: correlations between gene expression and gene variability reflect growth efficiencies
Jean-Paul Feugeas
,
Jérôme Tourret
,
Adrien Launay
,
Odile Bouvet
,
Claire Hoede
,
et al.
Article dans une revue
hal-02641264v1
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A Long Read project to find optimal technologic combinations for genome assembly and variability, epigenetic marks detection and metagenomic analysis
Carole Iampietro
,
Camille Eché
,
Adrien Castinel
,
Rémy-Félix Serre
,
Christophe C. Klopp
,
et al.
PAG XXVIII, Plant and Animal Genome , Jan 2020, San Diego, United States. 2020
Poster de conférence
hal-02947690v1
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Avancées réalisées en métabarcoding et en métagénomique dans le cadre du projet SeqOccIn grâce au séquençage longs fragments
Denis Milan
,
Jean Mainguy
,
Adrien Castinel
,
Olivier Bouchez
,
Sylvie Combes
,
et al.
Colloque INRAE Genomics 2022 , May 2022, Orléans, France.
, 2022
Poster de conférence
hal-03776011v1
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Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations
T. Rouxel
,
J. Grandaubert
,
Jk. Hane
,
Claire Hoede
,
Angela P. van de Wouw
,
et al.
Article dans une revue
hal-00841751v1
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Improving microbial taxonomic profiling with long read technologies
Jean Mainguy
,
Adrien Castinel
,
Olivier Bouchez
,
Sylvie Combes
,
Carole Iampietro
,
et al.
JOBIM2020 , Jun 2020, Montpellier (virtuel), France
Poster de conférence
hal-03177058v1
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Whole metagenome analysis with metagWGS
Joanna Fourquet
,
Adeline Chaubet
,
Hélène Chiapello
,
Christine Gaspin
,
Marisa Haenni
,
et al.
JOBIM 2019 , Jul 2019, Nantes, France.
, 2019
Poster de conférence
hal-02788137v1
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metagWGS: a workflow to analyse short and long HiFi metagenomic reads Taxonomic profile HiFi vs Short reads assembly
Joanna Fourquet
,
Jean Mainguy
,
Maïna Vienne
,
Céline Noirot
,
Pierre Martin
,
et al.
JOBIM 2022 , Jul 2022, Rennes, France. Actes des exposés (keynotes, contributions orales, mini-symposia) : JOBIM2022_proceedings_oral.pdf (23 Mo) et actes des posters et démos : JOBIM2022_proceedings_posters_demos.pdf (19 Mo).
⟨10.15454/1.5572369328961167E12⟩
Poster de conférence
hal-03771202v1
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Benefits of PacBio HiFi long reads for metagenomic whole genome analysis
Adrien Castinel
,
Jean Mainguy
,
Olivier Bouchez
,
Sylvie Combes
,
Carole Iampietro
,
et al.
Environmental And Agronomical Genomics Symposium , Oct 2021, Tours, France
Poster de conférence
hal-03538657v1
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Hippocode: A project to improve the annotation of equine non-coding RNAs involved in the Regulation of mitochondrial functions
Sophie Dhorne-Pollet
,
Anne Boland-Augé
,
Robert Olaso
,
Claire Hoede
,
Christine Gaspin
,
et al.
8th Targeting Mitochondria world congress , Oct 2017, Berlin, Germany. 2017
Poster de conférence
hal-02786720v1
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Contribution of Recombination to the Evolution of Human Immunodeficiency Viruses Expressing Resistance to Antiretroviral Treatment
Tamara Nora
,
Charlotte Charpentier
,
Olivier Tenaillon
,
Claire Hoede
,
François Clavel
,
et al.
Article dans une revue
hal-03611831v1
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Remodeling of the cycling transcriptome of the oyster Crassostrea gigas by the harmful algae Alexandrium minutum
Laura Payton
,
Mickael Perrigault
,
Claire Hoede
,
Jean-Charles Massabuau
,
Mohamedou Sow
,
et al.
Article dans une revue
hal-01605998v1
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Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism
Pietro D Spanu
,
James C Abbott
,
Joelle J. Amselem
,
Timothy A. Burgis
,
Darren M Soanes
,
et al.
Article dans une revue
hal-02664949v1
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