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Cindy E. Morris

Directrice de Recherche (DREX), INRAE at Avignon
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  • 1002066
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Présentation

I am a senior scientist and research director at the Plant Pathology research unit of INRAE’s center in Avignon, France where I have worked since 1989. My research focuses on microbial ecology to elucidate how the adaptation of microorganisms to their habitats affects two seemingly conflicting impacts on the environment: their capacity to i) cause disease, and in particular newly emerging diseases and to ii) play beneficial roles in major environmental phenomena – the water cycle in particular. My research concerns primarily the bacterium *Pseudomonas syringae* but my team also studies a wide range of other bacterial and fungal pathogens of plants. Questions common to the models of my team include the nature of non-agricultural habitats of pathogens and their role in disease outbreaks, and tracking pathways of long distance dissemination via the atmosphere and waterway. Detail of my activities can be found on the website of a project I coordinate about modernizing surveillance for plant health (https://beyond.paca.hub.inrae.fr/) and on my blog about the interaction of microorganisms with atmospheric processes (<https://bioice.wordpress.com/>). This work has led me to be involved in fostering understanding and adoption of the concept of One Health. In collaboration with Avignon University, I recently co-founded a new international graduate teaching and research program – IMPLANTEUS that opened in Sept 2020 (https://implanteus.univ-avignon.fr/en/) - that melds plant production and food processing with environmental sciences and human health. I also compose lyrics and performs songs about science and post educational videos about plant health and atmospheric processes on my YouTube channel (<https://www.youtube.com/channel/UCcaDNBCQ2nFaZ6NIJPSoMwg>). Awards & Recognition 2009. Distinguished Alumnus, Lyman Briggs College, Michigan State University, USA 2015. Chevalier of the Order of Agricultural Merit, July 2015, French Minister of Agriculture 2021. Fellow, American Society of Phytopathology https://www.apsnet.org/members/give-awards/awards/Pages/2021_Morris.aspx 2023. Femme-en-tête, Collège des Sociétés Savantes Académiques de France https://societes-savantes.fr/femmes-en-tete-2023-cindy-morris/ 2023. Fellow. International Society for Plant Pathology https://www.isppweb.org/about_objectives.asp#hm

Publications

odile-berge
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Pseudomonas syringae isolated in lichens for the first time: Unveiling Peltigera genus as the exclusive host

Natalia Ramírez , M. Auður Sigurbjörnsdóttir , Cecile Monteil , Odile Berge , Starri Heiðmarsson
Environmental Microbiology, 2023, 25 (12), pp.3502-3511. ⟨10.1111/1462-2920.16490⟩
Article dans une revue hal-04372576v1
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Comparative abundance and diversity of populations of the Pseudomonas syringae and Soft Rot Pectobacteriaceae species complexes throughout the Durance River catchment from its French Alps sources to its delta

Cindy E. Morris , Christelle Lacroix , Charlotte Chandeysson , Caroline Guilbaud , Cecile Monteil
Peer Community Journal, 2023, 3, pp.e88. ⟨10.24072/pcjournal.317⟩
Article dans une revue hal-04308248v1
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Pseudomonas syringae on plants in Iceland has likely evolved for several million years outside the reach of processes that mix this bacterial complex across Earth's temperate zones

Cindy E. Morris , Natalia Ramirez , Odile Berge , Christelle Lacroix , Cécile Monteil
Pathogens, 2022, 11, ⟨10.3390/pathogens11030357⟩
Article dans une revue hal-03610038v1

Chancre de l’abricotier : diversité bactérienne en verger

Luciana Parisi , Laurent Brun , Odile Berge , Benoit Borschinger , Christelle Lacroix
Phytoma , 2019, 727, pp.42-47
Article dans une revue hal-02307757v1
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Frontiers for research on the ecology of plant pathogenic bacteria: Fundamentals for sustainability

Cindy E. Morris , Marie-Anne Barny , Odile Berge , Linda L. Kinkel , Christelle Lacroix
Molecular Plant Pathology, 2017, 18 (2), pp.308-319. ⟨10.1111/mpp.12508⟩
Article dans une revue hal-02624126v1
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Isolation and identification of Pseudomonas syringae facilitated by a PCR targeting the whole P. syringae group

Caroline Guilbaud , Cindy E. Morris , ​mohamed Barakat , Philippe Ortet , Odile Berge
FEMS Microbiology Ecology, 2016, 92 (1), pp.fiv146. ⟨10.1093/femsec/fiv146⟩
Article dans une revue hal-02632676v1
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Agrifood systems and the microbial safety of fresh produce: Trade-offs in the wake of increased sustainability

Christophe Nguyen The , Marc Bardin , Annette Berard , Odile Berge , Julien Brillard
Science of the Total Environment, 2016, 562, pp.751-759. ⟨10.1016/j.scitotenv.2016.03.241⟩
Article dans une revue hal-01509043v1

A framework to gauge the epidemic potential of plant pathogens in environmental reservoirs: the example of kiwifruit canker

Claudia Bartoli , Jay Ram Lamichhane , Odile Berge , Caroline Guilbaud , Leonardo Varvaro
Molecular Plant Pathology, 2015, 16 (2), pp.137 - 149. ⟨10.1111/mpp.12167⟩
Article dans une revue hal-02637074v1

Mutability in Pseudomonas viridiflava as a programmed balance between antibiotic resistance and pathogenicity

Claudia Bartoli , Jay Ram Lamichhane , Odile Berge , Leonardo Varvaro , Cindy E. Morris
Molecular Plant Pathology, 2015, 16 (8), pp.860-869. ⟨10.1111/mpp.12243⟩
Article dans une revue hal-02633614v1
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Un cadre pour évaluer le potentiel d’émergence d’agents phytopathogènes

Patricia Le Crenn , Cindy E. Morris , Odile Berge , Claudia Bartoli
Lettre aux Entreprises - INRA, 2015, N° 74, Juin 2015
Article dans une revue hal-02637034v1
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A user's guide to a data base of the diversity of Pseudomonas syringae and its application to classifying strains in this phylogenetic complex

Odile Berge , Caroline Monteil , Claudia Bartoli , Charlotte Chandeysson , Caroline Guilbaud
PLoS ONE, 2014, 9 (9), pp.e105547. ⟨10.1371/journal.pone.0105547⟩
Article dans une revue hal-02640865v1
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The Pseudomonas viridiflava phylogroups in the P. syringae species complex are characterized by genetic variability and phenotypic plasticity of pathogenicity-related traits.

Claudia Bartoli , Odile Berge , Caroline Monteil , Caroline Guilbaud , Giorgio M. Balestra
Environmental Microbiology, 2014, 16 (7), pp.2301-2315. ⟨10.1111/1462-2920.12433⟩
Article dans une revue hal-02638544v1

The life history of Pseudomonas syringae: linking agriculture to earth system processes

Cindy E. Morris , Caroline Monteil , Odile Berge
Annual Review of Phytopathology, 2013, 51, pp.85 - 104. ⟨10.1146/annurev-phyto-082712-102402⟩
Article dans une revue hal-02652198v1

Microbial Biodiversity: Approaches to Experimental Design and Hypothesis Testing in Primary Scientific Literature from 1975 to 1999

Cindy E. Morris , Marc Bardin , Odile Berge , Pascale Frey-Klett , Nathalie Fromin
Microbiology and Molecular Biology Reviews, 2002, 66 (4), pp.592-616. ⟨10.1128/MMBR.66.4.592-616.2002⟩
Article dans une revue hal-02126964v1

Identification of bacteria in pasteurized zucchini purées stored at different temperatures and comparison with those found in other pasteurized vegetable purées

Marie-Helene Guinebretière , Odile Berge , Philippe Normand , Cindy E. Morris , Frederic Carlin
Applied and Environmental Microbiology, 2001, 67 (10), pp.4520-4530. ⟨10.1128/AEM.67.10.4520-4530.2001⟩
Article dans une revue hal-02683362v1
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The severity of kiwi (Actinidia deliciosa) bacterial canker disease under conditions of nitrogen and water stresses

Christelle Lacroix , Charlotte Chandeysson , Cecile Monteil , Léa Debort , Justine Lenoir
16. Rencontres Plantes Bactéries, Mar 2023, Aussois, France
Communication dans un congrès hal-04051022v1
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Pervasive reservoirs, long distance aerial spread, variable host range: integrating the challenges of anticipating disease caused by Pseudomonas syringae

Cindy E. Morris , Odile Berge , Christelle Lacroix , Ghislain Geniaux , A.S. Eddine
14. International conference on plant pathogenic bacteria, Università degli Studi di Perugia, Perugia (Italy), Jul 2022, Assise, Italy
Communication dans un congrès hal-03791633v1

The Great Pretender: the lichen Peltigera provides a leaf-like habitat for Iceland's unique genetic lines of Pseudomonas syringae.

Natalia Ramirez , Margrét Audur Sigurbjörnsdóttir , Odile Berge , Oddur Vilhelmsson , Cindy E. Morris
Phyllosphere 2022: 11. International symposium on leaf surface microbiology, University of California, Davis, USA, Jul 2022, Davis, California, United States
Communication dans un congrès hal-03739468v1

Linking sources and sinks in the long distance aerial dissemination of ubiquitous pathogens

Cindy E. Morris , Odile Berge , Charlotte Chandeysson , Caroline Guilbaud , Cécile Monteil
APS annual meeting - Plant health 2019, The American Phytopathological Society (APS). USA., Aug 2019, Cleveland, United States. ⟨10.1094/PHYTO-109-10-S2.1⟩
Communication dans un congrès hal-02736056v1

Reservoirs of plant pathogenic bacteria along the anthropogenic gradient in the Durance river

Claire Bertrand , Amandine Lecomte , Lydie Blottiere , Frédérique van Gijsegem , Jacques Pedron
13èmes rencontres Plantes-Bactéries, Jan 2018, AUSSOIS, France
Communication dans un congrès hal-03586484v1
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Kiwifruit trees and ground covers host diverse Pseudomonas syringae communities.

Christelle Lacroix , Benoit Borschinger , Luciana Parisi , Odile Berge , Charlotte Chandeysson
19. International kiwifruit symposium, International Society for Horticultural Science (ISHS). INT., Sep 2017, Porto, Portugal
Communication dans un congrès hal-02736969v1
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Ground covers in orchards: reservoirs and potential sources of inoculum of Pseudomonas syringae

Benoit Borschinger , Luciana Parisi , Christelle Lacroix , Charlotte Chandeysson , Caroline Guilbaud
12. Rencontres Plantes-Bactéries, Centre National de la Recherche Scientifique (CNRS). FRA., Jan 2016, Aussois, France
Communication dans un congrès hal-01608098v1
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From crops to clouds and back again: The dual life of the ubiquitous Pseudomonas syringae

Cindy E. Morris , Odile Berge , David C. Sands
12. Rencontres Plantes-Bactéries, Jan 2016, Aussois, France
Communication dans un congrès hal-03584938v1
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Articulating microbiology with disease and community ecology to further understanding of pathogen emergence

Christelle Lacroix , Benoit Borschinger , Odile Berge , Luciana Parisi , Cindy E. Morris
12. Rencontres Plantes-Bactéries, Centre National de la Recherche Scientifique (CNRS). FRA., Jan 2016, Aussois, France. 1 p
Communication dans un congrès hal-01604027v1
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A broad and operational classification framework to address the ecology of Pseudomonas syringae populations

Odile Berge , Caroline Monteil , Claudia Bartoli , Caroline Guilbaud , Charlotte Chandeysson
9. International Conference on Pseudomonas syringae and related pathogens, Universidad de Málaga (Málaga). ESP.; Universidad Politécnica de Madrid (UPM). ESP.; Universidad de Navarra (Pamplona). ESP., Jun 2015, Malaga, Spain
Communication dans un congrès hal-02740206v1
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Du nouveau dans le groupe Pseudomonas syringae : un cadre général de classification et des outils simples et rapides d'identification

Odile Berge , Claudia Bartoli , Caroline Guilbaud , Charlotte Chandeysson , Cindy E. Morris
1. Colloque R-Syst / Muséum national d'histoire naturelle, Oct 2015, Versailles, France
Communication dans un congrès hal-02740515v1
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From the ecology of Pseudomonas syringae to probable scenarios of future disease emergence

Cindy E. Morris , Claudia Bartoli , Jay Ram Lamichhane , Caroline Monteil , Odile Berge
13. International Conference on Plant Pathogenic Bacteria (ICPPB), Jun 2014, Shanghai, China. 126 p
Communication dans un congrès hal-02738607v1
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Novel understanding of the water cycle as a link between unsuspected habitats of airborne pathogens -what consequences for plant disease management?

Cindy E. Morris , Caroline Monteil , Odile Berge
10. International Congress of Plant Pathology (ICPP), Aug 2013, Pekin, China. 620 p
Communication dans un congrès hal-02746910v1
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Une nouvelle vision de l’histoire de vie des agents phytopathogènes

Caroline Monteil , Odile Berge , Caroline Guilbaud , Charlotte Chandeysson , Cindy E. Morris
Journées des Microbiologistes de l'Inra 2012, Nov 2012, L'Isle-sur-La-Sorgue, France
Communication dans un congrès hal-02748949v1
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Diversité de la bactérie phytopathogène Pseudomonas syringae dans les eaux de surface, les nappes et les biofilms des réseaux d'irrigation de Basse Durance

Odile Berge , Frédérique Razan , Caroline Monteil , Caroline Guilbaud , Catherine Glaux
5. colloque d'écologie microbienne, Association Française d'Ecologie Microbienne (AFEM). FRA.; Association Tunisienne de Biotechnologie (ATBiotech). TUN., Nov 2011, Hammamet, Tunisie
Communication dans un congrès hal-02744692v1
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Évolution du pouvoir pathogène d’une bactérie phytopathogène en dehors des zones agricoles. Impact des biofilms aquatiques sur la structure des populations de Pseudomonas syringae

Odile Berge , Caroline Monteil , Catherine Glaux , Caroline Guilbaud , Christel Leyronas
Colloque national d'écologie scientifique, Sep 2010, Montpellier, France
Communication dans un congrès hal-02757720v1

Tracing the progress of research in microbial biodiversity: 1975 to present

Cindy E. Morris , Marc Bardin , Odile Berge , Pascale Frey-Klett , Nathalie Fromin
4. Rencontres, Jan 2000, Aussois, France
Communication dans un congrès hal-02768746v1
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The severity of bacterial canker of kiwi (Actinidia deliciosa) under conditions of abiotic stresses

Christelle Lacroix , Charlotte Chandeysson , Cécile Monteil , Léa Debort , Caroline Guilbaud
International conference on ecological sciences "Ecology and evolution: New perspectives and societal challenges". Joint meeting SFE2, GFÖ, EEF., Nov 2022, Metz, France.
Poster de conférence hal-03898150v1
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Groundwater, a reservoir for plant pathogenic bacteria : the case of the Pseudomonas syringae complex in alluvial aquifer of Avignon

Odile Berge , Salah Nofal , Ludivine Rousset , Anne-Laure Cognard-Plancq , Caroline Guilbaud
14. International conference on plant pathogenic bacteria, Jul 2022, Assise, Italy.
Poster de conférence hal-03739627v1
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Abundance and diversity of Pseudomonas syringae in surface water throughout a watershed in a Mediterranean fruit and vegetable production region

Cindy E. Morris , Odile Berge , Christelle Lacroix , Charlotte Chandeysson , Caroline Guilbaud
Phyllosphere 2022: 11. International symposium on leaf surface microbiology, Jul 2022, Davis, California, United States.
Poster de conférence hal-03739477v1
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Tn-phyto: essential genomes of nine bacterial phytopathogens

Julie Baltenneck , Ben Moussa , Loïc Couderc , Areski Flissi , Jacques Pédron
4. International Ewinia workshop (IEW), Jul 2022, Assise, Italy
Poster de conférence hal-03721522v1

Mapping the abundance and diversity of Pseudomonas syringae in a river throughout a watershed in a Mediterranean fruit and vegetable production region

Cindy E. Morris , Odile Berge , Christelle Lacroix , Charlotte Chandeysson , Caroline Guilbaud
APS annual meeting - Plant health 2021, Aug 2021, St Paul, United States. APS, Phytopathology, 111, 2021
Poster de conférence hal-03586685v1
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What can be learned from the comparison between culture grown bacteria on selective media and environmental uncultured samples for the assessment of the bacterial diversity?

Amandine Lecomte , Lydie Blottiere , Odile Berge , Frederique F. van Gijsegem , Rochelle-Newall Emma
13. Rencontres Plantes-Bactéries, Jan 2018, Aussois, France
Poster de conférence hal-03586494v1
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Pseudomonas syringae diversity and population structure in Kiwifruit orchards

Christelle Lacroix , Benoit Borschinger , Luciana Parisi , Odile Berge , Charlotte Chandeysson
8. Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM), Oct 2017, Camaret-sur-Mer, France. , 2017
Poster de conférence hal-02788277v1
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Diversité et structuration des populations de Pseudomonas syringae en vergers d'abricotier

Luciana Parisi , Benedicte Morgaint , Benoit Borschinger , Caroline Guilbaud , Charlotte Chandeysson
12. Rencontres Plantes-Bactéries, Jan 2016, Aussois, France. , 2016, 12ièmes Rencontres Plantes-Bactéries, 11-15 janvier 2016, Centre Paul Langevin 75300 Aussois
Poster de conférence hal-02743174v1
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Mise à jour de la classification du groupe Pseudomonas syringae et des outils simples et rapides d'identification

Charlotte Chandeysson , Odile Berge , Claudia Bartoli , Benoit Borschinger , Caroline Guilbaud
12. Rencontres Plantes-Bactéries, Jan 2016, Aussois, France. , 1 p., 2016, 12ièmes Rencontres Plantes-Bactéries, 11-15 janvier 2016, Centre Paul Langevin 75300 Aussois
Poster de conférence hal-02742317v1
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Identification of the reservoirs of Pseudomonas syringae in Prunus armeniaca orchards

Luciana Parisi , Benoit Borschinger , Charlotte Chandeysson , Jean-François Bourgeay , Odile Berge
2. International workshop on bacterial diseases of stone fruits and nuts, Apr 2015, Izmir, Turkey. 1 p., 2015
Poster de conférence hal-02801137v1
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Impact of ground cover on Pseudomonas syringae communities in kiwifruit orchards

Benoit Borschinger , Christelle Lacroix , Charlotte Chandeysson , Caroline Guilbaud , Luciana Parisi
10. International symposium on phyllosphere microbiology, Jul 2015, Ascona, Switzerland. 2015
Poster de conférence hal-02743486v1
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Biodiversité microbienne dans les cours d’eau du bassin de la Durance : conséquences de la présence de bactéries phytopathogènes dans les biofilms

Odile Berge , Caroline Monteil , Catherine Glaux , Caroline Guilbaud , Frédéric Rimet
Usages écologiques, économiques et sociaux de l’eau agricole en Méditerranée : quels enjeux pour quels services ?, Jan 2011, Marseille, France. 2011, Colloque international LPED / IMEP
Poster de conférence hal-02750433v1