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Effect of tRNA maturase depletion on the levels and stabilities of ribosome assembly cofactor mRNAs in Bacillus subtilis

 Aude Trinquier , Ciarán Condon , Frederique Braun
2022
Pré-publication, Document de travail hal-03871271v1
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Assay of Bacillus subtilis ribonuclease activity in vivo

 Laetitia Gilet , Olivier Pellegrini , Anastasia Tolcan , Delphine Allouche , Sylvain Durand , et al.
Methods in Molecular Biology: RNA remodeling proteins, Methods and Protocols, In press
Chapitre d'ouvrage hal-03004813v1
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Three essential ribonucleases-RNase y, J1, and III-control the abundance of a majority of bacillus subtilis mRNAs

 Sylvain Durand , Laetitia Gilet , Philippe Bessières , Pierre P. Nicolas , Ciaran Condon
PLoS Genetics, 2012, 8 (3), ⟨10.1371/journal.pgen.1002520⟩
Article dans une revue hal-02646931v1

Structural studies of RNase M5 reveal two-metal-ion supported two-step dsRNA cleavage for 5S rRNA maturation

 Stephanie Oerum , Marjorie Catala , Maxime Bourguet , Laetitia Gilet , Pierre Barraud , et al.
RNA Biology, 2021, pp.1-11. ⟨10.1080/15476286.2021.1885896⟩
Article dans une revue hal-03169718v1
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Mapping of internal monophosphate 5 ends of Bacillus subtilis messenger RNAs and ribosomal RNAs in wild-type and ribonuclease-mutant strains

 Jeanne M. Dichiara , Bo Liu , Sabine Figaro , Ciarán Condon , David H. Bechhofer
Nucleic Acids Research, 2016, 44 (7), pp.C. ⟨10.1093/nar/gkw073⟩
Article dans une revue hal-01327381v1
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Assay of Bacillus subtilis ribonuclease activity in vitro

 Olivier Pellegrini , Laetitia Gilet , Aude Trinquier , Anastasia Tolcan , Delphine Allouche , et al.
Methods in Molecular Biology: RNA remodeling proteins, Methods and Protocols, In press
Chapitre d'ouvrage hal-03004822v1
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Shutdown of multidrug transporter bmrCD mRNA expression mediated by the ribosome-associated endoribonuclease (Rae1) cleavage in a new cryptic ORF

 Valentin Deves , Aude Trinquier , Laetitia Gilet , Jawad Alharake , Ciarán Condon , et al.
RNA, 2023, 29 (8), pp.1108-1116. ⟨10.1261/rna.079692.123⟩
Article dans une revue hal-04279259v1

RNases and Helicases in Gram-Positive Bacteria

 Ciaran Condon , Sylvain Durand
Regulating with RNA in Bacteria and Archaea, American Society of Microbiology, pp.37-53, 2018, ⟨10.1128/microbiolspec.RWR-0003-2017⟩
Chapitre d'ouvrage hal-02328938v1

Chapter 15 Assay of Bacillus subtilis Ribonucleases In Vitro In RNA Turnover in Bacteria, Archaea and Organelles

 Ciarán Condon , Olivier Pellegrini , Nathalie Mathy , Lionel Benard , Yulia Redko , et al.
Methods in Enzymology, 2008
Chapitre d'ouvrage hal-03347810v1

A high-resolution view of RNA endonuclease cleavage in Bacillus subtilis

 James Taggart , Jean-Benoit Lalanne , Sylvain Durand , Frédérique Braun , Ciarán Condon , et al.
BioRxiv, 2023, ⟨10.1101/2023.03.12.532304⟩
Article dans une revue hal-04250489v1

Ribosomes initiating translation of the hbs mRNA protect it from 5'-to-3' exoribonucleolytic degradation by RNase J1

 Roula Daou-Chabo , Nathalie Mathy , Lionel Benard , Ciarán Condon
Molecular Microbiology, 2009
Article dans une revue hal-03347823v1

sRNA-mediated activation of gene expression by inhibition of 5'-3’ exonucleolytic mRNA degradation

 Sylvain Durand , Frédérique Braun , Anne-Catherine Helfer , Pascale Romby , Ciaran Condon
eLife, 2017, 6, ⟨10.7554/eLife.23602⟩
Article dans une revue hal-02171288v1
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Effect of tRNA Maturase Depletion on Levels and Stabilities of Ribosome Assembly Cofactor and Other mRNAs in Bacillus subtilis

 Aude Trinquier , Ciarán Condon , Frédérique Braun
Microbiology Spectrum, 2023, 11 (2), ⟨10.1128/spectrum.05134-22⟩
Article dans une revue hal-04278788v1

The essential nature of YqfG, a YbeY homologue required for 3′ maturation of Bacillus subtilis 16S ribosomal RNA is suppressed by deletion of RNase R

 Kathrin Baumgardt , Laetitia Gilet , Sabine Figaro , Ciaran Condon
Nucleic Acids Research, 2018, 46 (16), pp.8605-8615. ⟨10.1093/nar/gky488⟩
Article dans une revue hal-02349763v1

Bacillus subtilis ribonucleases J1 and J2 form a complex with altered enzyme behaviour

 Nathalie Mathy , Agnès Hébert , Peggy Mervelet , Lionel Benard , Audrey Dorleans , et al.
Molecular Microbiology, 2010, 75 (2), pp.489-498. ⟨10.1111/j.1365-2958.2009.07004.x⟩
Article dans une revue hal-02923482v1
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Structures of B. subtilis Maturation RNases Captured on 50S Ribosome with Pre-rRNAs

 Stephanie Oerum , Tom Dendooven , Marjorie Catala , Laetitia Gilet , Clément Dégut , et al.
Molecular Cell, 2020, 80 (2), pp.227-236.e5. ⟨10.1016/j.molcel.2020.09.008⟩
Article dans une revue hal-03015124v1

Chapter 9 In Vitro Assays of 5′ to 3′‐Exoribonuclease Activity In RNA Turnover in Eukaryotes: Nucleases, Pathways and Analysis of mRNA Decay

 Olivier Pellegrini , Nathalie Mathy , Ciarán Condon , Lionel Benard
Methods in Enzymology, 2008
Chapitre d'ouvrage hal-03347787v1
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A nitric oxide regulated small RNA controls expression of genes involved in redox homeostasis in Bacillus subtilis

 Sylvain Durand , Frédérique Braun , Efthimia Lioliou , Cédric Romilly , Anne-Catherine Helfer , et al.
PLoS Genetics, 2015, 11 (2), ⟨10.1371/journal.pgen.1004957⟩
Article dans une revue hal-02636652v1
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The torpedo effect in Bacillus subtilis : RN ase J1 resolves stalled transcription complexes

 Michaela Šiková , Jana Wiedermannová , Martin Převorovský , Ivan Barvík , Petra Sudzinová , et al.
EMBO Journal, 2019, 39 (3), ⟨10.15252/embj.2019102500⟩
Article dans une revue hal-03013047v1
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New RoxS sRNA Targets Identified in Bacillus subtilis by Pulsed SILAC

 Delphine Allouche , Gergana Kostova , Marion Hamon , Christophe H Marchand , Mathias Caron , et al.
Microbiology Spectrum, 2023, 11 (4), ⟨10.1128/spectrum.00471-23⟩
Article dans une revue hal-04250461v1

Trz1, the long form RNase Z from yeast, forms a stable heterohexamer with endonuclease Nuc1 and mutarotase

 Miao Ma , Ines Li de La Sierra Gallay , Noureddine Lazar , Olivier Pellegrini , Jean Lepault , et al.
Biochemical Journal, 2017, ⟨10.1042/BCJ20170435⟩
Article dans une revue hal-02390058v1

Bacillus subtilis ribonucleases J1 and J2 form a complex with altered enzyme behaviour

 Nathalie Mathy , Agnès M Hébert , Peggy Mervelet , Lionel Benard , Audrey Dorleans , et al.
Molecular Microbiology, 2010, 75 (2), pp.489-498. ⟨10.1111/j.1365-2958.2009.07004.x⟩
Article dans une revue hal-03347836v1

Ribosomes initiating translation of the hbs mRNA protect it from 5′-to-3′ exoribonucleolytic degradation by RNase J1

 Roula Daou-Chabo , Nathalie Mathy , Lionel Benard , Ciaran Condon
Molecular Microbiology, 2009, 71 (6), pp.1538-1550. ⟨10.1111/j.1365-2958.2009.06620.x⟩
Article dans une revue hal-02923514v1

Regulation of RNA processing and degradation in bacteria

 Aude Trinquier , Sylvain Durand , Frédérique Braun , Ciarán Condon
Biochimica et Biophysica Acta - Gene Regulatory Mechanisms , 2020, 1863 (5), pp.194505. ⟨10.1016/j.bbagrm.2020.194505⟩
Article dans une revue hal-03004764v1

Structure of the ubiquitous 3' processing enzyme RNase Z bound to transfer RNA

 Inès Li de La Sierra-Gallay , Nathalie Mathy , Olivier Pellegrini , Ciarán Condon
Nature Structural and Molecular Biology, 2006, 13 (4), pp.376-377. ⟨10.1038/nsmb1066⟩
Article dans une revue istex hal-03347756v1
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The 5S rRNA maturase, ribonuclease M5, is a Toprim domain family member

 Frédéric Allemand , Nathalie Mathy , Dominque Brechemier-Baey , Ciarán Condon
Nucleic Acids Research, 2005, 33 (13), pp.4368-4376. ⟨10.1093/nar/gki752⟩
Article dans une revue hal-03347730v1

The crystal structure of Trz1, the long form RNase Z from yeast

 Miao Ma , Ines Li de la sierra-Gallay , Noureddine Lazar , Olivier Pellegrini , Dominique Durand , et al.
Nucleic Acids Research, 2017, ⟨10.1093/nar/gkx216⟩
Article dans une revue hal-02390053v1

Maturation of the 5' end of Bacillus subtilis 16s rRNA by the essential ribonuclease YkqC/RNase J1

 Robert Britton , Wen Tingyi , Laura Schaeffer , Olivier Pellegrini , William C Uiker , et al.
Molecular Microbiology, 2007, 63 (1), pp.127-138. ⟨10.1111/j.1365-2958.2006.05499.x⟩
Article dans une revue hal-03347769v1

Chapter 14 Analysis of mRNA Decay in Bacillus subtilis In RNA Turnover in Bacteria, Archaea and Organelles

 David H. Bechhofer , Irina Oussenko , Yao Gintaras , Nathalie Mathy , Ciarán Condon
Methods in Enzymology, 2008
Chapitre d'ouvrage hal-03347801v1
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A Nitric Oxide Regulated Small RNA Controls Expression of Genes Involved in Redox Homeostasis in Bacillus subtilis

 Frédérique Braun , Efthimia Lioliou , Cédric Romilly , Anne-Catherine Helfer , Laurianne Kuhn , et al.
PLoS Genetics, 2015, 11
Article dans une revue hal-02329291v1
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