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Chromatin mobility upon DNA damage: state of the art and remaining questions

 Christophe Zimmer , Emmanuelle Fabre
Current Genetics, 2019, 65 (1), pp.1-9. ⟨10.1007/s00294-018-0852-6⟩
Article dans une revue pasteur-02074352v1
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ImJoy: an open-source computational platform for the deep learning era

 Wei Ouyang , Florian Mueller , Martin Hjelmare , Emma Lundberg , Christophe Zimmer
Nature Methods, 2019, 16 (12), pp.1199-1200. ⟨10.1038/s41592-019-0627-0⟩
Article dans une revue pasteur-02401584v1
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Chromosome-level quality scaffolding of brown algal genomes using InstaGRAAL, a proximity ligation-based scaffolder

 Lyam Baudry , Martial Marbouty , Hervé Marie-Nelly , Alexandre Cormier , Nadège Guiglielmoni , et al.
2021
Pré-publication, Document de travail hal-02947625v1
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FISH-quant: automatic counting of transcripts in 3D FISH images

 Florian Mueller , Adrien Senecal , Katjana Tantale , Hervé Marie-Nelly , Nathalie Ly , et al.
Nature Methods, 2013, 10 (4), pp.277 - 278. ⟨10.1038/nmeth.2406⟩
Article dans une revue pasteur-01622707v1

Chromosome arm length and nuclear constraints determine the dynamic relationship of yeast subtelomeres

 Pierre Therizols , Tarn Duong , Bernard Dujon , Christophe Zimmer , Emmanuelle Fabre
Proceedings of the National Academy of Sciences of the United States of America, 2010, 107 (5), pp.2025-2030. ⟨10.1073/pnas.0914187107⟩
Article dans une revue pasteur-02082757v1

Entrapment of Intracytosolic Bacteria by Septin Cage-like Structures

 Serge Mostowy , Matteo Bonazzi , Mélanie Anne Hamon , To Nam Tham , Adeline Mallet , et al.
Cell Host and Microbe, 2010, 8 (5), pp.433 - 444. ⟨10.1016/j.chom.2010.10.009⟩
Article dans une revue pasteur-01376115v1
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The imaging tsunami: Computational opportunities and challenges

 Wei Ouyang , Christophe Zimmer
Current Opinion in Systems Biology, 2017, Big data acquisition and analysis • Pharmacology and drug discovery, 4, pp.105-113. ⟨10.1016/j.coisb.2017.07.011⟩
Article dans une revue pasteur-02492825v1
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Functional organization of cytoplasmic inclusion bodies in cells infected by respiratory syncytial virus.

 Vincent Rincheval , Mickael Lelek , Elyanne Gault , Camille Bouillier , Delphine Sitterlin , et al.
Nature Communications, 2017, 8 (1), pp.563. ⟨10.1038/s41467-017-00655-9⟩
Article dans une revue pasteur-01589539v1

Super-resolution imaging of mitochondrial morphology reveals a close link between mitochondrial dynamics and oxidative phosphorylation in yeast

 Manish Kumar Singh , Mickaël Lelek , Laetitia Cavellini , Christophe Zimmer , Mickael M. Cohen
Ecole thématique Mifobio, Nov 2021, Giens (Var), France
Poster de conférence hal-03965416v1
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smiFISH and FISH-quant - a flexible single RNA detection approach with super-resolution capability.

 Nikolay Tsanov , Aubin Samacoits , Racha Chouaib , Abdel-Meneem Traboulsi , Thierry Gostan , et al.
Nucleic Acids Research, 2016, ⟨10.1093/nar/gkw784⟩
Article dans une revue pasteur-01375913v1

Computational Models of Large-Scale Genome Architecture

 Angelo Rosa , Christophe Zimmer
Ronald Hancock, Kwang W. Jeon. International Review of Cell and Molecular Biology, 307, Elsevier, pp.275-349, 2014, ⟨10.1016/B978-0-12-800046-5.00009-6⟩
Chapitre d'ouvrage pasteur-02079507v1
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How to build a yeast nucleus

 Hua Wong , Jean-Michel Arbona , Christophe Zimmer
Nucleus, 2013, 4 (5), pp.361 - 366. ⟨10.4161/nucl.26226⟩
Article dans une revue pasteur-02079519v1
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Single-molecule localization microscopy

 Mickaë Lelek , Melina T Gyparaki , Gerti Beliu , Florian Schueder , Juliette Griffié , et al.
Nature Reviews Methods Primers, 2021, 1 (1), pp.39. ⟨10.1038/s43586-021-00038-x⟩
Article dans une revue pasteur-03695794v1
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Faster and less phototoxic 3D fluorescence microscopy using a versatile compressed sensing scheme

 Maxime Woringer , Xavier Darzacq , Christophe Zimmer , Mustafa Mir
Optics Express, 2017, 25 (12), pp.13668-13683. ⟨10.1364/OE.25.013668⟩
Article dans une revue pasteur-02074973v1

EhPAK, a member of the p21-activated kinase family, is involved in the control of Entamoeba histolytica migration and phagocytosis

 Elisabeth Labruyère , Christophe Zimmer , Vincent Galy , Jean-Christophe Olivo-Marin , Nancy Guillen
Journal of Cell Science, 2003, 116 (1), pp.61-71. ⟨10.1242/jcs.00190⟩
Article dans une revue hal-02373501v1

Species-specific impact of the autophagy machinery on Chikungunya virus infection

 Delphine Judith , Serge Mostowy , Mehdi Bouraï , Nicolas Gangneux , Mickaël Lelek , et al.
EMBO Reports, 2013, 14 (6), pp.534 - 544. ⟨10.1038/embor.2013.51⟩
Article dans une revue pasteur-02447347v1

Versatile CRISPR-Based Method for Site-Specific Insertion of Repeat Arrays to Visualize Chromatin Loci in Living Cells

 Thomas Sabate , Christophe Zimmer , Edouard Bertrand
Spatial Genome Organization, 2532, Springer US, pp.275-290, 2022, Methods in Molecular Biology, 978-1-0716-2497-5. ⟨10.1007/978-1-0716-2497-5_13⟩
Chapitre d'ouvrage pasteur-03753599v1
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The risk of COVID-19 death is much greater and age dependent with type I IFN autoantibodies

 Jérémy Manry , Paul Bastard , Adrian Gervais , Tom Le Voyer , Jérémie Rosain , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2022, 119 (21), pp.349-363. ⟨10.1073/pnas.2200413119⟩
Article dans une revue hal-03856619v2
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Transcription Factors Modulate c-Fos Transcriptional Bursts

 Adrien Senecal , Brian Munsky , Florence Proux , Nathalie Ly , Floriane E. Braye , et al.
Cell Reports, 2014, 8 (1), pp.75-83. ⟨10.1016/j.celrep.2014.05.053⟩
Article dans une revue hal-01312884v1
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How the Genome Folds: The Biophysics of Four-Dimensional Chromatin Organization

 Jyotsana J Parmar , Maxime Woringer , Christophe Zimmer
Annual Review of Biophysics and Biomolecular Structure, 2019, Annual Review of Biophysics, 48 (1), ⟨10.1146/annurev-biophys-052118-115638⟩
Article dans une revue pasteur-02082840v1
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Super-resolution visualization and modeling of human chromosomal regions reveals cohesin-dependent loop structures

 Xian Hao , Jyotsana J. Parmar , Benoît Lelandais , Andrey Aristov , Wei Ouyang , et al.
Genome Biology, 2021, 22 (1), pp.150. ⟨10.1186/S13059-021-02343-W⟩
Article dans une revue pasteur-03326366v1
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Modulation of the intrinsic chromatin binding property of HIV-1 integrase by LEDGF/p75

 Delphine Lapaillerie , Benoît Lelandais , Eric Mauro , Floriane Lagadec , Camille Tumiotto , et al.
Nucleic Acids Research, 2021, 49 (19), pp.11241-11256. ⟨10.1093/nar/gkab886⟩
Article dans une revue hal-03795503v1

Myosin II and the Gal-GalNAc lectin play a crucial role in tissue invasion by Entamoeba histolytica.

 Evelyne Coudrier , François Amblard , Christophe Zimmer , Pascal Roux , Jean-Christophe Olivo-Marin , et al.
Cellular Microbiology, 2005, 7 (1), pp.19-27. ⟨10.1111/j.1462-5822.2004.00426.x⟩
Article dans une revue hal-00014474v1
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Chromatin stiffening underlies enhanced locus mobility after DNA damage in budding yeast

 Sébastien Herbert , Alice Brion , Jean-Michel Arbona , Mickaël Lelek , Adeline Veillet , et al.
EMBO Journal, 2017, 36 (17), pp.2595-2608. ⟨10.15252/embj.201695842⟩
Article dans une revue pasteur-02078756v1

When mitochondrial dynamics and high-resolution imaging get together

 Manish Kumar Singh , Laetitia Cavellini , Lea Dietrich , Mickaël Lelek , Perrine Bomme , et al.
The 21rst European Bioenergetics Conference, Aug 2022, Aix en provence, France
Poster de conférence hal-03965466v1
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instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder

 Lyam Baudry , Nadège Guiglielmoni , Hervé Marie-Nelly , Alexandre Cormier , Komlan Avia , et al.
Genome Biology, 2020, 21 (1), ⟨10.1186/s13059-020-02041-z⟩
Article dans une revue pasteur-02873422v1
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Filling annotation gaps in yeast genomes using genome-wide contact maps.

 Hervé Marie-Nelly , Martial Marbouty , Axel Cournac , Gianni Liti , Gilles Fischer , et al.
Bioinformatics, 2014, 30 (15), pp.2105-13. ⟨10.1093/bioinformatics/btu162⟩
Article dans une revue pasteur-01488132v1

Deep learning in image-based phenotypic drug discovery

 Daniel Krentzel , Spencer Shorte , Christophe Zimmer
Trends in Cell Biology, In press, ⟨10.1016/j.tcb.2022.11.011⟩
Article dans une revue pasteur-03932169v1
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Rhesus negative males have an enhanced IFNγ-mediated immune response to influenza A virus

 Jamie A. Sugrue , Megan Smith , Celine Posseme , Bruno Charbit , Nollaig M. Bourke , et al.
Genes and Immunity, 2022, ⟨10.1038/s41435-022-00169-5⟩
Article dans une revue pasteur-03648209v1
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From dynamic chromatin architecture to DNA damage repair and back

 Emmanuelle Fabre , Christophe Zimmer
Nucleus, 2018, 9 (1), pp.161-170. ⟨10.1080/19491034.2017.1419847⟩
Article dans une revue pasteur-02060127v1
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