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Deep learning ­– promises for 3D nuclear imaging: a guide for biologists

Guillaume Mougeot , Tristan Dubos , Frédéric Chausse , Emilie Péry , Katja Graumann , et al.
Journal of Cell Science, 2022, 135 (7), ⟨10.1242/jcs.258986⟩
Article dans une revue hal-03977343v1
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Meeting report -INDEPTH kick-off meeting

Geraint Parry , Aline V. Probst , Ceĺia Baroux , Christophe Tatout
Journal of Cell Science, 2018, 131 (12), ⟨10.1242/jcs.220558⟩
Article dans une revue hal-02364137v1
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Distinct clades of TELOMERE REPEAT BINDING transcriptional regulators interplay to regulate plant development

Simon Amiard , Léa Feit , Lauriane Simon , Samuel Le Goff , Loriane Loizeau , et al.
2023
Pré-publication, Document de travail hal-04236947v1
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Genetic and epigenetic variation in 5S ribosomal RNA genes reveals genome dynamics in Arabidopsis thaliana

Lauriane Simon , Fernando A Rabanal , Tristan Dubos , Cecilia Oliver , Damien Lauber , et al.
Nucleic Acids Research, 2018, 46 (6), pp.3019 - 3033. ⟨10.1093/nar/gky163⟩
Article dans une revue hal-01919927v1
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Evolutionary history of Methyltransferase 1 genes in hexaploid wheat

Mélanie Thomas , Lise Pingault , Axel Poulet , Jorge Duarte , Mickaël Throude , et al.
BMC Genomics, 2014, 15, ⟨10.1186/1471-2164-15-922⟩
Article dans une revue hal-02641435v1

Different mutations in the ZmCAD2 gene underlie the maize brown-midrib1 (bm1) phenotype with similar effects on lignin characteristics and have potential interest for bioenergy production

Y. Barrière , H. Chavigneau , S. Delaunay , A. Courtial , M. Bosio , et al.
Maydica, 2013, 58, pp.6--20
Article dans une revue hal-01563554v1

P-element transposition in Drosophila melanogaster: influence of size and arrangement in pairs.

M. Delattre , Christophe Tatout , D. Coen
Molecular and General Genetics MGG, 2000, 263 (3), pp.445-54
Article dans une revue hal-01927341v1

Spatial organization of chromosome territories in the interphase nucleus of trisomy 21 cells

Stephan Kemeny , Christophe Tatout , Gaelle Salaun , Céline Pebrel-Richard , Carole Goumy , et al.
Chromosoma, 2018, 127 (2), pp.247 - 259. ⟨10.1007/s00412-017-0653-6⟩
Article dans une revue hal-01926526v1

A novel family of plant nuclear envelope-associated proteins.

Vidya Pawar , Axel Poulet , Gwenaelle Detourne , Christophe Tatout , Emmanuel Vanrobays , et al.
Journal of Experimental Botany, 2016, 67 (19), pp.5699-5710. ⟨10.1093/jxb/erw332⟩
Article dans une revue hal-01927334v1
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Untangling chromatin interactions

Geraint Parry , Mónica Pradillo , Aline V. Probst , Christophe Tatout
Journal of Experimental Botany, 2020, 71, pp.5115 - 5118. ⟨10.1093/jxb/eraa334⟩
Article dans une revue hal-03040915v1

Characterization of two distinct subfamilies of SUN-domain proteins in Arabidopsis and their interactions with the novel KASH-domain protein AtTIK

Katja Graumann , Emmanuel Vanrobays , Sylvie Tutois , Aline V. Probst , David Evans , et al.
Journal of Experimental Botany, 2014, 65 (22), pp.6499 - 6512. ⟨10.1093/jxb/eru368⟩
Article dans une revue hal-01920006v1
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Different mutations in the ZmCAD2 gene underlie the maize brown-midrib1 (bm1) phenotype with similar effects on lignin characteristics and have potential interest for bioenergy production

Yves Y. Barrière , Hélène Chavigneau , Sabrina Delaunay , Audrey A. Courtial , Mickael Bosio , et al.
Maydica, 2013, 58 (1-4), pp.6-20
Article dans une revue hal-02649147v1
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The Histone Chaperone HIRA Is a Positive Regulator of Seed Germination

Elodie Layat , Marie Bourcy , Sylviane Cotterell , Julia Zdzieszyńska , Sophie Desset , et al.
International Journal of Molecular Sciences, 2021, 22 (8), pp.4031. ⟨10.3390/ijms22084031⟩
Article dans une revue hal-03215617v1

Characterization of a cinnamoyl-CoA reductase 1 (CCR1) mutant in maize: effects on lignification, fibre development, and global gene expression

Barek B. Tamasloukht , Mary Sarah-Jane Wong Quai M. S.-J. W. Q. Lam , Yves Y. Martinez , Koffi K. Tozo , Odile O. Barbier , et al.
Journal of Experimental Botany, 2011, 62 (11), pp.3837 - 3848. ⟨10.1093/jxb/err077⟩
Article dans une revue hal-01004556v1

Exploring the evolution of the proteins of the plant nuclear envelope

Axel Poulet , Aline V. Probst , Katja Graumann , Christophe Tatout , David Evans
Nucleus, 2017, 8 (1), pp.46 - 59. ⟨10.1080/19491034.2016.1236166⟩
Article dans une revue hal-01919986v1

Replication-coupled histone H3.1 deposition determines nucleosome composition and heterochromatin dynamics during Arabidopsis seedling development

Matthias Benoit , Lauriane Simon , Sophie Desset , Céline Duc , Sylviane Cotterell , et al.
New Phytologist, 2018, ⟨10.1111/nph.15248⟩
Article dans une revue hal-01919943v1

Extensive conservation of sequences and chromatin structures in the bxd polycomb response element among Drosophilid species.

I. Dellino , Christophe Tatout , Vincenzo Pirrotta
International Journal of Developmental Biology, 2002, 46 (1), pp.133-41
Article dans une revue hal-01927338v1

Structure of a polycomb response element and in vitro binding of polycomb group complexes containing GAGA factor.

B. Horard , Christophe Tatout , S. Poux , Vincenzo Pirrotta
Molecular and Cellular Biology, 2000, 20 (9), pp.3187-97
Article dans une revue hal-01927340v1
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Automated 3D bio-imaging analysis of nuclear organization by NucleusJ 2.0

Tristan Dubos , Axel Poulet , Céline Gonthier-Gueret , Guillaume Mougeot , Emmanuel Vanrobays , et al.
Nucleus, 2020, 11 (1), pp.315 - 329. ⟨10.1080/19491034.2020.1845012⟩
Article dans une revue hal-03441015v1
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Toward the discovery of maize cell wall genes involved in silage quality and capacity to biofuel production

Yves Y. Barrière , Valérie Méchin , Florian Lafarguette , Doménica Manicacci , Fabienne F. Guillon , et al.
Maydica, 2009, 54 (2-3), pp.161-198
Article dans une revue hal-02660982v1

empty pericarp4 encodes a mitochondrion-targeted pentatricopeptide repeat protein necessary for seed development and plant growth in maize.

F. Gutierrez-Marcos , Mauro Dal Pra , Anna Giulini , M. Costa , Giuseppe Gavazzi , et al.
The Plant cell, 2007, 19 (1), pp.196-210. ⟨10.1105/tpc.105.039594⟩
Article dans une revue hal-01927335v1
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The H3 histone chaperone NASP SIM3 escorts CenH3 in Arabidopsis

Samuel Le Goff , Burcu Nur Keçeli , Hana Jeřábková , Stefan Heckmann , Twan Rutten , et al.
Plant Journal, 2019, ⟨10.1111/tpj.14518⟩
Article dans une revue hal-02323987v1

S1 SINE retroposons are methylated at symmetrical and non-symmetrical positions in Brassica napus: identification of a preferred target site for asymmetrical methylation.

C. Goubely , P. Arnaud , Christophe Tatout , S. Heslop-Harrison , Jean-Marc Deragon
Plant Molecular Biology, 1999, 39 (2), pp.243-55
Article dans une revue hal-01927343v1

Investigation of Nuclear Periphery Protein Interactions in Plants Using the Membrane Yeast Two-Hybrid (MbY2H) System.

Maxime Voisin , Emmanuel Vanrobays , Christophe Tatout
Methods in Molecular Biology, 2018, 1840, pp.221-235. ⟨10.1007/978-1-4939-8691-0_16⟩
Article dans une revue hal-01927331v1

The plant LINC complex at the nuclear envelope.

Christophe Tatout , David E Evans , Emmanuel Vanrobays , Aline V Probst , Katja Graumann
Chromosome Research, 2014, 22 (2), pp.241-52. ⟨10.1007/s10577-014-9419-7⟩
Article dans une revue hal-01051307v1
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NODeJ: an ImageJ plugin for 3D segmentation of nuclear objects

Tristan Dubos , Axel Poulet , Geoffrey Thomson , Emilie Péry , Frédéric Chausse , et al.
BMC Bioinformatics, 2022, 23 (1), pp.216. ⟨10.1186/s12859-022-04743-6⟩
Article dans une revue inserm-03692276v1

Toward the discovery of maize cell wall genes involved in silage quality and capacity to biofuel production

Yves Y. Barrière , Valérie Méchin , Florian Lafarguette , Doménica Manicacci , Fabienne F. Guillon , et al.
21. Conference on maize and sorghum breeding in the genomics era, Jun 2009, Bergamo, Italy
Communication dans un congrès hal-02819897v1

Quantitative 3D Analysis of Nuclear Morphology and Heterochromatin Organization from Whole-Mount Plant Tissue Using NucleusJ.

Sophie Desset , Axel Poulet , Christophe Tatout
Methods in Molecular Biology, 2018, 1675, pp.615-632. ⟨10.1007/978-1-4939-7318-7_33⟩
Article dans une revue hal-01927330v1

Similar target site selection occurs in integration of plant and mammalian retroposons.

Christophe Tatout , L. Lavie , Jean-Marc Deragon
Journal of Molecular Evolution, 1998, 47 (4), pp.463-70
Article dans une revue hal-01927344v1

Computational Methods for Studying the Plant Nucleus.

Axel Poulet , Xiao Zhou , Kentaro Tamura , Iris Meier , Christophe Tatout , et al.
Methods in Molecular Biology, 2018, 1840, pp.205-219. ⟨10.1007/978-1-4939-8691-0_15⟩
Article dans une revue hal-01927332v1