Christophe MOUGEL

Samuel Jacquiod, Ruben Puga-Freitas, Aymé Spor, Arnaud Mounier, Cécile Monard, et al.. A core microbiota of the plant-earthworm interaction conserved across soils. Soil Biology and Biochemistry, Elsevier, 2020, 144, pp.107754. ⟨10.1016/j.soilbio.2020.107754⟩. ⟨hal-02535174⟩

Cervin Guyomar, Wesley Delage, Fabrice Legeai, Christophe Mougel, Jean-Christophe Simon, et al.. MinYS: mine your symbiont by targeted genome assembly in symbiotic communities. NAR Genomics and Bioinformatics, Oxford University Press, 2020, 2 (3), pp.1-11. ⟨10.1093/nargab/lqaa047⟩. ⟨hal-02891885⟩

M. Ourry, V. Lopez, M. Hervé, L. Lebreton, C. Mougel, et al.. Long-lasting effects of antibiotics on bacterial communities of adult flies. FEMS Microbiology Ecology, Wiley-Blackwell, 2020, 96 (4), pp.fiaa028. ⟨10.1093/femsec/fiaa028⟩. ⟨hal-02865290⟩

Stéphanie Daval, Kévin Gazengel, Arnaud Belcour, Juliette Linglin, Anne-Yvonne Guillerm-Erckelboudt, et al.. Soil microbiota influences clubroot disease by modulating Plasmodiophora brassicae and Brassica napus transcriptomes. BioRxiv, 2020. ⟨hal-02624824v1⟩

Lionel Lebreton, Anne-Yvonne Guillerm-Erckelboudt, Kévin Gazengel, Juliette Linglin, Morgane Ourry, et al.. Temporal dynamics of bacterial and fungal communities during the infection of Brassica rapa roots by the protist Plasmodiophora brassicae.. PLoS ONE, Public Library of Science, 2019, 14 (2), pp.e0204195. ⟨10.1371/journal.pone.0204195⟩. ⟨hal-02094715⟩

Jean-Christophe Simon, Julian Marchesi, Christophe Mougel, Marc-André Selosse. Host-microbiota interactions: from holobiont theory to analysis. Microbiome, BioMed Central, 2019, 7 (1), pp.7:5. ⟨10.1186/s40168-019-0619-4⟩. ⟨hal-01980500⟩

Stéphanie Daval, Arnaud Belcour, Kévin Gazengel, Ludovic Legrand, Jerome Gouzy, et al.. Computational analysis of the Plasmodiophora brassicae genome: mitochondrial sequence description and metabolic pathway database design. Genomics, Elsevier, 2019, 111 (6), pp.1629-1640. ⟨10.1016/j.ygeno.2018.11.013⟩. ⟨hal-01943250⟩

Morgane Ourry, Lionel Lebreton, Valérie Chaminade, Anne-Yvonne Guillerm-Erckelboudt, Maxime Hervé, et al.. Influence of Belowground Herbivory on the Dynamics of Root and Rhizosphere Microbial Communities. Frontiers in Ecology and Evolution, Frontiers Media S.A, 2018, 6, pp.1-21. ⟨10.3389/fevo.2018.00091⟩. ⟨hal-02184354⟩

Cervin Guyomar, Fabrice Legeai, Emmanuelle Jousselin, Christophe Mougel, Claire Lemaitre, et al.. Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches. Microbiome, BioMed Central, 2018, 6 (1), pp.1-21. ⟨10.1186/s40168-018-0562-9⟩. ⟨hal-01926402⟩

Amandine Viollet, Barbara Pivato, Christophe Mougel, Jean Claude Cleyet-Marel, Cécile Gubry-Rangin, et al.. Pseudomonas fluorescens C7R12 type III secretion system impacts mycorrhization of Medicago truncatula and associated microbial communities. Mycorrhiza, Springer Verlag, 2017, 27 (1), pp.23-33. ⟨10.1007/s00572-016-0730-3⟩. ⟨hal-01606859⟩

Tom La Chaise, Morgane Ourry, Lionel Lebreton, Anne-Yvonne Guillerm-Erckelboudt, Juliette Linglin, et al.. Can soil microbial diversity influence plant metabolites and life history traits of a rhizophagous insect?: A demonstration in oilseed rape.. Insect Science, Wiley, 2017, 24 (6), pp.1045-1056. ⟨10.1111/1744-7917.12478⟩. ⟨hal-01661250⟩

Mikaël Bili, Anne-Marie Cortesero, Christophe Mougel, Jean-Pierre Gauthier, Gwennola Ermel, et al.. Bacterial community diversity harboured by interacting species. PLoS ONE, Public Library of Science, 2016, 11 (6), 23 p. ⟨10.1371/journal.pone.015539223p.⟩. ⟨hal-02630825⟩

M. Bili, A.M. Cortesero, C. Mougel, J.P. Gauthier, G. Ermel, et al.. Bacterial community diversity harboured by interacting species. PLoS ONE, Public Library of Science, 2016, 11 (6), pp.e0155392. ⟨10.1371/journal.pone.0155392⟩. ⟨hal-01372446⟩

Philippe Lemanceau, Pierre-Alain Maron, Sylvie Mazurier, Christophe Mougel, Barbara Pivato, et al.. Understanding and managing soil biodiversity: a major challenge in agroecology. Agronomy for Sustainable Development, Springer Verlag/EDP Sciences/INRA, 2015, 35 (1), pp.67-81. ⟨10.1007/s13593-014-0247-0⟩. ⟨hal-01208787⟩

Delphine Moreau, Barbara Pivato, David Bru, Hugues Busset, Florence Deau, et al.. Plant traits related to nitrogen uptake influence plant-microbe competition. Ecology, Ecological Society of America, 2015, 96 (8), pp.2300-2310. ⟨10.1890/14-1761.1⟩. ⟨hal-02637764⟩

Bruce C. Thomson, Emilie Tisserant, Pierre Plassart, Stéphane Uroz, Rob I. Griffiths, et al.. Soil conditions and land use intensification effects on soil microbial communities across a range of European field sites. Soil Biology and Biochemistry, Elsevier, 2015, 88, pp.403-413. ⟨10.1016/j.soilbio.2015.06.012⟩. ⟨hal-01269419⟩

Bruce Thomson, Emilie Tisserant, Pierre Plassart, Stephane Uroz, Rob Griffiths, et al.. Soil conditions and land use intensification effects on soil microbial communities across a range of European field sites. Soil Biology and Biochemistry, Elsevier, 2015, 88, pp.403-413. ⟨10.1016/j.soilbio.2015.06.012⟩. ⟨hal-02916119⟩

Anouk Zancarini, Christophe Mougel, Sébastien Terrat, Christophe Salon, Nathalie Munier-Jolain. Combining ecophysiological and microbial ecological approaches to study the relationship between Medicago truncatula genotypes and their associated rhizosphere bacterial communities. Plant and Soil, Springer Verlag, 2013, 365 (1-2), pp.183 - 199. ⟨10.1007/s11104-012-1364-7⟩. ⟨hal-02646573⟩

Anne-Sophie Voisin, Jacques Guéguen, Christian Huyghe, Marie-Helene Jeuffroy, Marie-Benoît Magrini, et al.. Les légumineuses dans l'Europe du XXIè siècle : Quelle place dans les systèmes agricoles et alimentaires actuels et futurs ? Quels nouveaux défis pour la recherche ?. Innovations Agronomiques, INRA, 2013, 30 (septembre), pp.283-312. ⟨hal-01004750⟩

Anne-Sophie Voisin, Jacques Guéguen, Christian Huyghe, Marie-Helene Jeuffroy, Marie-Benoît Magrini, et al.. Les légumineuses dans l'Europe du XXIè siècle : Quelle place dans les systèmes agricoles et alimentaires actuels et futurs ? Quels nouveaux défis pour la recherche ?. Innovations Agronomiques, INRA, 2013, 30, pp.283-312. ⟨hal-01005055v1⟩

Noémie Pascault, Lionel Ranjard, Aurore Kaisermann, Dipankar Bachar, Richard Christen, et al.. Stimulation of different functional groups of bacteria by various plant residues as a driver of soil priming effect.. Ecosystems, Springer Verlag, 2013, 16 (5), pp.810-822. ⟨10.1007/s10021-013-9650-7⟩. ⟨hal-00847889⟩

Anne-Sophie Voisin, Jacques Guéguen, Christian Huyghe, Marie-Helene Jeuffroy, Marie-Benoît Magrini, et al.. Legumes for feed, food, biomaterials and bioenergy in Europe : a review. Agronomy for Sustainable Development, Springer Verlag/EDP Sciences/INRA, 2013, décembre (Online), pp.1-20. ⟨10.1007/s13593-013-0189-y⟩. ⟨hal-00956058⟩

Clémentine Lepinay, Thierry Rigaud, Christophe Salon, Philippe Lemanceau, Christophe Mougel. Interaction between Medicago truncatula and Pseudomonas fluorescens: evaluation of costs and benefits across an elevated atmospheric CO2.. PLoS ONE, Public Library of Science, 2012, 7 (9), pp.e45740. ⟨10.1371/journal.pone.0045740⟩. ⟨hal-00736637⟩

Anouk Zancarini, Christophe Mougel, Anne-Sophie Voisin, Marion Prudent, Christophe Salon, et al.. Soil Nitrogen Availability and Plant Genotype Modify the Nutrition Strategies of M. truncatula and the Associated Rhizosphere Microbial Communities. PLoS ONE, Public Library of Science, 2012, 7 (10), ⟨10.1371/journal.pone.0047096⟩. ⟨hal-02646215⟩

Pierre Plassart, Sébastien Terrat, Bruce Thomson, Robert Griffiths, Samuel Dequiedt, et al.. Evaluation of the ISO standard 11063 DNA extraction procedure for assessing soil microbial abundance and community structure. PLoS ONE, Public Library of Science, 2012, 7 (9), 8 p. ⟨10.1371/journal.pone.0044279⟩. ⟨hal-01190636⟩

Sebastien Terrat, Richard Christen, Samuel Dequiedt, Mélanie Lelievre, Virginie Nowak, et al.. Molecular biomass and MetaTaxogenomic assessment of soil microbial communities as influenced by soil DNA extraction procedure. Microbial Biotechnology, Wiley, 2012, 5 (1), pp.135-141. ⟨10.1111/j.1751-7915.2011.00307.x⟩. ⟨hal-01546177⟩

Amandine Viollet, Thérèse Corberand, Christophe Mougel, Agnès Robin, Philippe Lemanceau, et al.. Fluorescent pseudomonads harboring type III secretion genes are enriched in the mycorrhizosphere of Medicago truncatula. FEMS Microbiology Ecology, Wiley-Blackwell, 2011, 75 (3), pp.457-467. ⟨10.1111/j.1574-6941.2010.01021.x⟩. ⟨hal-02644346⟩

Christophe Mougel, Pierre-Alain Maron, Laurent Philippot, Lionel Ranjard, Philippe Lemanceau. Traduction de la métagenomique des agrosystemes en services écologiques. Biofutur, Elsevier - Cachan : Lavoisier, 2011, 30 (319), pp.44-47. ⟨hal-02645538⟩

Pierre-Alain Maron, Christophe Mougel, Lionel Ranjard. Soil microbial diversity: Methodological strategy, spatial overview and functional interest. Comptes Rendus Biologies, Elsevier Masson, 2011, 334 (5-6), pp.403-411. ⟨10.1016/j.crvi.2010.12.003⟩. ⟨hal-02644731⟩

Christophe Mougel, Pierre-Alain Maron, Laurent Philippot, Lionel Ranjard, Philippe Lemanceau. Translation of metagenomics agroecosystems in ecological services. Biofutur, Elsevier - Cachan : Lavoisier, 2011, pp.44 - 47. ⟨hal-02644706⟩

Nicolas Chemidlin Prévost-Bouré, Richard Christen, Samuel Dequiedt, Christophe Mougel, Mélanie Lelièvre, et al.. Validation and application of a PCR primer set to quantify fungal communities in the soil environment by real-time quantitative PCR. PLoS ONE, Public Library of Science, 2011, 6 (9), pp.1-13. ⟨10.1371/journal.pone.0024166⟩. ⟨hal-02648355⟩

Nicolas Chemidlin Prévost-Bouré, Richard Christen, Samuel Dequiedt, Christophe Mougel, Mélanie Lelievre, et al.. Validation and Application of a PCR Primer Set to Quantify Fungal Communities in the Soil Environment by Real-Time Quantitative PCR. PLoS ONE, Public Library of Science, 2011, 6 (9), pp.e24166. ⟨10.1371/journal.pone.0024166⟩. ⟨hal-01254016⟩

Lionel Ranjard, Samuel Dequiedt, Claudy Jolivet, Nicolas P.A. Saby, Jean Thioulouse, et al.. Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative. Agronomy for Sustainable Development, Springer Verlag/EDP Sciences/INRA, 2010, 30 (2), pp.359-365. ⟨10.1051/agro/2009033⟩. ⟨hal-00886549⟩

S. Dequiedt, M. Lelièvre, C. Jolivet, N.P.A. Saby, M. Martin, et al.. ECOMIC-RMQS: biogéographie microbienne à l`échelle de la France. Etude et Gestion des Sols, Association Française pour l'Etude des Sols, 2009, 16(3), pp.219-231. ⟨hal-00539409⟩

Hans Lambers, Christophe Mougel, Benoît Jaillard, Philippe Hinsinger. Plant-microbe-soil interactions in the rhizosphere: an evolutionary perspective. Plant and Soil, Springer Verlag, 2009, 321 (1-2), pp.83-115. ⟨10.1007/s11104-009-0042-x⟩. ⟨hal-02665203⟩

Barbara Pivato, Pierre Offre, Sara Marchelli, Bruno Barbonaglia, Christophe Mougel, et al.. Bacterial effects on arbuscular mycorrhizal fungi and mycorrhiza development as influenced by the bacteria, fungi, and host plant. Mycorrhiza, Springer Verlag, 2009, 19 (2), pp.81-90. ⟨10.1007/s00572-008-0205-2⟩. ⟨hal-02665834⟩

Lionel Ranjard, Samuel Dequiedt, Mélanie Lelievre, Pierre-Alain Maron, Christophe Mougel, et al.. Platform GenoSol: a new tool for conserving and exploring soil microbial diversity. Environmental Microbiology Reports, Wiley, 2009, 1 (2), pp.97 - 99. ⟨10.1111/j.1758-2229.2009.00023.x⟩. ⟨hal-02668342⟩

Laetitia Bernard, Pierre-Alain Maron, Christophe Mougel, Virginie Nowak, Jean Lévêque, et al.. Contamination of soil by copper affects the dynamics, diversity, and activity of soil bacterial communities involved in wheat decomposition and carbon storage.. Applied and Environmental Microbiology, American Society for Microbiology, 2009, 75 (23), pp.7565-7569. ⟨10.1128/AEM.00616-09⟩. ⟨hal-00434100⟩

Ezekiel Baudoin, Sylvie Nazaret, Christophe Mougel, Lionel Ranjard, Yvan Moenne-Loccoz. Impact of inoculation with the phytostimulatory PGPR Azospirillum lipoferum CRT1 on the genetic structure of the rhizobacterial community of field-grown maize. Soil Biology and Biochemistry, Elsevier, 2009, 41 (2), pp.409-413. ⟨10.1016/j.soilbio.2008.10.015⟩. ⟨halsde-00525716⟩

Samuel Dequiedt, Maud Lelièvre, Claudy Jolivet, Nicolas Saby, Manuel Martin, et al.. ECOMIC-RMQS : biogéographie microbienne à l’échelle de la France. Etat d’avancement et premiers résultats. Etude et Gestion des Sols, Association Française pour l'Etude des Sols, 2009, 16 (3-4), pp.219-231. ⟨hal-02656049⟩

Pierre Offre, Barbara Pivato, Sylvie Mazurier, Séverine Siblot, Graziella Berta, et al.. Microdiversity of Burkholderiales associated with mycorrhizal and nonmycorrhizal roots of Medicago truncatula. FEMS Microbiology Ecology, Wiley-Blackwell, 2008, 65 (2), pp.180-192. ⟨10.1111/j.1574-6941.2008.00504.x⟩. ⟨hal-02661182⟩

Melanie Bressan, Christophe Mougel, Samuel Dequiedt, Pierre-Alain Maron, Philippe Lemanceau, et al.. Response of soil bacterial community structure to successive perturbations of different types and intensities. Environmental Microbiology, Wiley-Blackwell, 2008, 10 (8), pp.2184-2187. ⟨10.1111/j.1462-2920.2008.01641.x⟩. ⟨hal-02665170⟩

Barbara Pivato, Pierre Offre, Christophe Mougel, Sylvie Mazurier, Diederik van Tuinen, et al.. Biologie des communautés dans la rhizosphère : analyse des interactions plantes - champignons mycorhizogènes à arbuscules - bactéries. uB Sciences, Université de Bourgogne, 2008, 3, pp.116-125. ⟨hal-02669103⟩

F. El Zahar Haichar, W. Achouak, R. Christen, T. Heulin, C. Marol, et al.. Identification of cellulolytic bacteria in soil by stable isotope probing. Environmental Microbiology, Wiley-Blackwell, 2007, pp.625-634. ⟨hal-00305533⟩

Pierre-Alain Maron, Lionel Ranjard, Christophe Mougel, Philippe Lemanceau. Metaproteomics : a new approach for studying functional microbial ecology. Microbial Ecology, Springer Verlag, 2007, 53 (3), pp.486-493. ⟨10.1007/s00248-006-9196-8⟩. ⟨hal-02658508⟩

Pierre-Alain Maron, Christophe Mougel, Séverine Siblot, Houria Abbas, Philippe Lemanceau, et al.. Protein extraction and fingerprinting optimization of bacterial communities in natural environment. Microbial Ecology, Springer Verlag, 2007, 53 (3), pp.426-434. ⟨10.1007/s00248-006-9121-1⟩. ⟨hal-02661837⟩

Barbara Pivato, Sylvie Mazurier, Philippe Lemanceau, Séverine Siblot, Graziella Berta, et al.. Medicago species affect the community composition of arbuscular mycorrhizal fungi associated with roots. New Phytologist, Wiley, 2007, 176 (1), pp.197-210. ⟨10.1111/j.1469-8137.2007.02151.x⟩. ⟨hal-02664961⟩

Pierre Offre, Barbara Pivato, Séverine Siblot, E. Gamalero, Thérèse Corberand, et al.. Identification of bacterial groups preferentially associated with mycorrhizal roots of Medicago truncatula. Applied and Environmental Microbiology, American Society for Microbiology, 2007, 73 (3), pp.913-921. ⟨10.1128/aem.02042-06⟩. ⟨hal-02665197⟩

Laetitia Bernard, Christophe Mougel, Pierre-Alain Maron, Virginie Nowak, Jean Lévêque, et al.. Dynamics and identification of soil microbial populations actively assimilating carbon from 13C-labelled wheat residue as estimated by DNA- and RNA-SIP techniques.. Environmental Microbiology, Wiley-Blackwell, 2007, 9 (3), pp.752-764. ⟨10.1111/j.1462-2920.2006.01197.x⟩. ⟨hal-00294737⟩

Agnès Robin, Sylvie Mazurier, Christophe Mougel, Gérard Vansuyt, Thérèse Corberand, et al.. Diversity of root-associated fluorescent pseudomonads as affected by ferritin overexpression in tobacco.. Environmental Microbiology, Wiley-Blackwell, 2007, 9 (7), pp.1724-37. ⟨10.1111/j.1462-2920.2007.01290.x⟩. ⟨hal-00185892⟩

Feth El Zahar Haichar, Wafa Achouak, Richard Christen, Thierry Heulin, Christine Marol, et al.. Identification of cellulolytic bacteria in soil by stable isotope probing.. Environmental Microbiology, Wiley-Blackwell, 2007, 9 (3), pp.625-34. ⟨10.1111/j.1462-2920.2006.01182.x⟩. ⟨hal-00318792⟩

David P. H. Lejon, Virginie Nowak, Sabrina Bouko, Noemie Pascault, Christophe Mougel, et al.. Fingerprinting and diversity of bacterial copA genes in response to soil types, soil organic status and copper contamination. FEMS Microbiology Ecology, Wiley-Blackwell, 2007, 61 (3), pp.424 à 437. ⟨10.1111/j.1574-6941.2007.00365.x⟩. ⟨insu-00386976⟩

Pierre-Alain Maron, Christophe Mougel, David Lejon, Esmeralda Carvalho, Karine Bizet, et al.. Temporal variability of airborne bacterial community structure in an urban area. Atmospheric Environment, Elsevier, 2006, 40 (40), pp.8074-8080. ⟨10.1016/j.atmosenv.2006.08.047⟩. ⟨hal-02662697⟩

Agnès Robin, Christophe Mougel, Séverine Siblot, Gérard Vansuyt, Sylvie Mazurier, et al.. Effect of ferritin over-expression in tobacco on the structure of bacterial and pseudomonad communities associated with the roots. FEMS Microbiology Ecology, Wiley-Blackwell, 2006, 58 (3), pp.492 - 502. ⟨10.1111/j.1574-6941.2006.00174.x⟩. ⟨hal-02661715⟩

Perrine Portier, Marion Fischer-Le Saux, Christophe Mougel, Catherine Lerondelle, David Chapulliot, et al.. Identification of Genomic Species in Agrobacterium Biovar 1 by AFLP Genomic Markers. Applied and Environmental Microbiology, American Society for Microbiology, 2006, 72 (11), pp.7123-7131. ⟨hal-00128068⟩

Perrine Portier, Marion Le Saux, Christophe Mougel, Catherine Lerondelle, David Chapulliot, et al.. Identification of genomic species in Agrobacterium biovar 1 by AFLP genomic markers. Applied and Environmental Microbiology, American Society for Microbiology, 2006, 72 (11), pp.7123-7131. ⟨10.1128/AEM.00018-06⟩. ⟨hal-02657982⟩

Christophe Mougel, Pierre Offre, Lionel Ranjard, Thérèse Corberand, E. Gamalero, et al.. Dynamic of the genetic structure of bacterial and fungal communities at different developmental stages of Medicago truncatula Gaertn. cv. Jemalong line J5. New Phytologist, Wiley, 2006, 170 (1), pp.165-175. ⟨10.1111/j.1469-8137.2006.01650.x⟩. ⟨hal-02668733⟩

Pierre-Alain Maron, David Lejon, Esmeralda Carvalho, Karine Bizet, Philippe Lemanceau, et al.. Assessing genetic structure and diversity of airborne bacterial communities by DNA fingerprinting and 16S rDNA clone library. Atmospheric Environment, Elsevier, 2005, 39 (20), pp.3687-3695. ⟨10.1016/j.atmosenv.2005.03.002⟩. ⟨hal-02683032⟩

Sylvie Mazurier, M. Lemunier, Séverine Siblot, Christophe Mougel, Philippe Lemanceau. Distribution and diversity of type III secretion system-like genes in saprophytic and phytopathogenic fluorescent pseudomonads. FEMS Microbiology Ecology, Wiley-Blackwell, 2004, 49, pp.455-467. ⟨hal-02672136⟩

S. Teyssier-Cuvelle, Phil M. Oger, C. Mougel, K. Groud, S. Farrand, et al.. A Highly Selectable and Highly Transferable Ti Plasmid to Study Conjugal Host Range and Ti Plasmid Dissemination in Complex Ecosystems. Microbial Ecology, Springer Verlag, 2004, 48 (1), pp.10-18. ⟨10.1007/s00248-003-2023-6⟩. ⟨hal-02123026⟩

S. Delorme, Laurent Philippot, Véronique Edel-Hermann, Chrystel Deulvot, Christophe Mougel, et al.. Comparative genetic diversity of the narG, nosZ, and 16S rRNA genes in fluorescent Pseudomonads. Applied and Environmental Microbiology, American Society for Microbiology, 2003, 69 (2), pp.1004-1012. ⟨hal-02674671⟩

Lionel Ranjard, D.P. Lejon, Christophe Mougel, Loik Scherer, Didier Merdinoglu, et al.. Sampling strategy in molecular microbial ecology : influence of soil sample size on DNA fingerprinting analysis of fungal and bacterial communities. Environmental Microbiology, Wiley-Blackwell, 2003, 5 (11), pp.1111-1120. ⟨hal-02679013⟩

Z. Krimi, A. Petit, Christophe Mougel, Yves Dessaux, Xavier Nesme. Seasonal fluctuations and long-term persistence of pathogenic populations of Agrobacterium spp. in soils. Applied and Environmental Microbiology, American Society for Microbiology, 2002, 68, pp.3358-3365. ⟨hal-02669536⟩

Christophe Mougel, Jean Thioulouse, Guy Perrière, Xavier Nesme. A mathematical method for determining genome divergence and species delineation using AFLP. International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2002, 52, pp.573-586. ⟨hal-02673208⟩

S. Jarraud, Christophe Mougel, Jean Thioulouse, Gérard Lina, H. Meugnier, et al.. Relationships between Staphylococcus aureus genetic background, virulence factors, agr groups (alleles), and human disease. Infection and Immunity, American Society for Microbiology, 2002, 70 (2), pp.631-641. ⟨hal-02681316⟩

S. Jarraud, C. Mougel, J. Thioulouse, G. Lina, H. Meugnier, et al.. Relationships between Staphylococcus aureus genetic background virulence factors agr groups (alleles) and human disease.. Infection and Immunity, American Society for Microbiology, 2002, 70, pp.631-641. ⟨10.1128/IAI.70.2.631-641.2002⟩. ⟨hal-00427274⟩

Z. Krimi, A. Petit, C. Mougel, Y. Dessaux, X. Nesme. Seasonal fluctuations and long-term persistence of pathogenic populations of Agrobacterium spp. in soils.. Applied and Environmental Microbiology, American Society for Microbiology, 2002, 68 (7), pp.3358-65. ⟨10.1128/AEM.68.7.3358-3365.2002⟩. ⟨hal-00145324⟩

C. Mougel, J. Thioulouse, G. Perrière, X. Nesme. A mathematical method for determining genome divergence and species delineation using AFLP. International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2002, 52, pp.573-586. ⟨10.1099/00207713-52-2-573⟩. ⟨hal-00427290⟩

S. Teyssier-Cuvelle, C. Mougel, Xavier Nesme. Direct conjugal transfers of Ti plasmid to soil microflora. Molecular Ecology, Wiley, 2002, 8 (8), pp.1273-1284. ⟨10.1046/j.1365-294X.1999.00689.x⟩. ⟨hal-02573551⟩

Lionel Ranjard, F. Poly, J.C. Lata, Christophe Mougel, Jean Thioulouse, et al.. Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints : biological and methodological variability. Applied and Environmental Microbiology, American Society for Microbiology, 2001, 67 (10), pp.4479-4487. ⟨hal-02674586⟩

L. Ranjard, F. Poly, J. C. Lata, C. Mougel, J. Thioulouse, et al.. Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: biological and methodological variability.. Applied and Environmental Microbiology, American Society for Microbiology, 2001, 67 (10), pp.4479-87. ⟨10.1128/AEM.67.10.4479–4487.2001⟩. ⟨bioemco-00353796⟩

Christophe Mougel, I.B. Zhulin. CHASE : an extracellular sensing domain common to transmembrane receptors from prokariotes, lower eukaryotes and plants. Trends in Biochemical Sciences, Elsevier, 2001, 26 (10), pp.582-584. ⟨hal-02671662⟩

S. Jarraud, M.A. Peyrat, A. Lim, A. Tristan, M. Bes, et al.. egc, a hyfhly prevalent operon of enterotixin gene, forms a putative nursery of superantigens in Staphylococcus aureus. Journal of Immunology, Publisher : Baltimore : Williams & Wilkins, c1950-. Latest Publisher : Bethesda, MD : American Association of Immunologists, 2001, 166, pp.669-677. ⟨hal-02679012⟩

Christophe Mougel, Benoît Cournoyer, Xavier Nesme. Novel tellurite-amended media and specific chromosomal and Ti plasmid probes for direct analysis of soil populations of Agrobacterium biovars 1 and 2. Applied and Environmental Microbiology, American Society for Microbiology, 2001, 67, pp.65-74. ⟨10.1128/AEM.67.1.65-74.2001⟩. ⟨hal-02669542⟩

C. Mougel, S. Teyssier, C. d'Angelo, K. Groud, M. Neyra, et al.. Experimental and theoretical evaluation of typing methods based upon random amplification of genomic restriction fragments (AFLP) for bacterial population genetics. Genetics Selection Evolution, BioMed Central, 2001, 33, pp.S319-S338. ⟨hal-00427187⟩

Christophe Mougel, Sabrina Teyssier, C. d'Angelo, K. Groud, M. Neyra, et al.. Experimental and theoretical evaluation of typing methods based upon random amplification of genomic restriction fragments (AFLP) for bacterial population genetics. Genetics Selection Evolution, BioMed Central, 2001, 33 (1), pp.319-338. ⟨hal-02670077⟩

S. Hauser, M. Stevens, Christophe Mougel, H.G. Smith, C. Fritsch, et al.. Biological, serological and molecular variability suggest three distinct polerovirus species infecting beet or rape. Phytopathology, American Phytopathological Society, 2000, 90 (5), pp.460-466. ⟨hal-02698195⟩

S. Hauser, M. Stevens, Christophe Mougel, Etienne Herrbach, H. Smith, et al.. Etude phylogénétique des luteoviridae pathogènes pour la betterave sucrière. Virologie, John Libbey Eurotext 1999, 3 (2), pp.165. ⟨hal-02690064⟩

S. Teyssier-Cuvelle, Christophe Mougel, Xavier Nesme. Direct conjugal transfers of Ti plasmid to soil microflora. Molecular Ecology, Wiley, 1999, 8, pp.1273-1284. ⟨hal-02692194⟩

Karine Mandon, P.A. Kaminski, Christophe Mougel, N. Desnoues, Bernard Dreyfus, et al.. Role of the fixGHI region of Azorhizobium caulinodans in free-living and symbiotic nitrogen fixation. FEMS Microbiology Letters, Wiley-Blackwell, 1993, 114, pp.185-190. ⟨hal-02714131⟩

Cervin Guyomar, Wesley Delage, Fabrice Legeai, Christophe Mougel, Jean-Christophe Simon, et al.. Reference-guided genome assembly in metagenomic samples. JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. pp.1-8. ⟨hal-02308257⟩

Manuel Blouin, Samuel Jacquiod, Arnaud Mounier, Aymé Spor, Ruben Puga Freitas, et al.. A core microbiota of plant and earthworm interaction? Phylogenetic and functional aspects. International Conference on Holobionts, Apr 2017, paris, France. ⟨hal-02953650⟩

Cervin Guyomar, Fabrice Legeai, Christophe Mougel, Claire Lemaitre, Jean-Christophe Simon. Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches. International Conference on Holobionts, Apr 2017, Paris, France. ⟨hal-01638839⟩

Marc Buee, Matthieu Barret, Maria Bernard, Didier Debroas, Isabelle Domaizon, et al.. Microbial metacommunity: a METABAR coding approach. 2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France. ⟨hal-01607836⟩

Corinne Vacher, Christophe Mougel, Marc Buee, Matthieu Barret. Le phytobiome: concept et potentiel d'utilisation en amélioration des plantes. Conseil scientifique du Département BAP, Feb 2017, Paris, France. ⟨hal-01605029⟩

P. Fichet, R. Haudebourg, C. Mougel. Digital Autoradiography technique an efficient tool for sampling procedure. D&RS conference 2016 - Decommissioning and Remote Systems Conference, Jul 2016, Pittsburg, United States. ⟨cea-02509795⟩

Julie Aubert, Sophie Schbath, Christophe Mougel, Stephane Robin. Latent Block Model for ecological abundance data. 30. European Meeting of Statisticians, Jul 2015, Amsterdam, Netherlands. ⟨hal-01661254⟩

Barbara Pivato, Sylvie Mazurier, Christophe Mougel, Pierre Offre, Amandine Viollet, et al.. Strategies for analyzing interactions between arbuscular mycorrhiza and bacteria. Conférences Jacques-Monod, Dec 2013, Roscoff, France. ⟨hal-02747379⟩

Sébastien Terrat, Samuel Dequiedt, Richard Christen, Mélanie Lelievre, Tiffanie Regnier, et al.. Apport des nouvelles générations de séquençage pour accéder à la diversité des communautés microbiennes du sol : nécessité d’un ‘pipeline’ bio-informatique pour les biologistes. Journées d'animation "MEM Days" organisées par l'INRA, Jan 2012, Ecully, France. ⟨hal-02809171⟩

Philippe Lemanceau, Barbara Pivato, Christophe Mougel, Laure Avoscan, Sylvie Mazurier. Diversité et activités microbiennes dans la rhizosphère: des atouts majeurs en agroécologie. Alliances au pays des racines - 14e Colloque Scientifique de la Société d'Horticulture de France, May 2012, Paris, France. ⟨hal-02747709⟩

Sébastien Terrat, Samuel Dequiedt, Richard Christen, Dipankar Bachar, Mélanie Lelievre, et al.. Apport des nouvelles générations de séquençage pour accéder à la diversité et la richesse des communautés microbiennes de sols issus d'échantillonnage de grande ampleur. Ecole Thématique Expert Génomique Environnementale ETEGE, Apr 2012, Aussois, France. ⟨hal-01208719⟩

Sébastien Terrat, Pierre Plassart, Richard Christen, Samuel Dequiedt, Tiffanie Regnier, et al.. Optimisation du pyroséquençage haut-débit pour caractériser la diversité taxonomique des communautés bactériennes des sols. Workshop"Interactions des Microorganismes avec leurs Environnements : Circulation, Adaptation", Jun 2012, Dijon, France. ⟨hal-01208716⟩

Philippe Lemanceau, Pierre-Alain Maron, Christophe Mougel, Laurent Philippot, Barbara Pivato, et al.. Maîtrise et gestion de la biodiversité dans les sols: quelles perspectives ?. Carrefours de l'Innovation Agronomique (CIAG) 2012. Évaluer et gérer la fertilité des sols, Apr 2012, Orléans, France. ⟨hal-02807825⟩

Philippe Lemanceau, Mark Bailey, Jack H. Faber, Bryan Griffiths, Pierre-Alain Maron, et al.. Connecting soil biodiversity to functions and ecosystem services: presentation of case studies and of the EU FP7 project EcoFINDERS. 4. International Congress Eurosoil 2012 - Soil Science for the Benefit of Mankind and Environment, Jul 2012, Bari, Italy. ⟨hal-01268038⟩

Pierre Plassart, Sébastien Terrat, Bruce Thomson, Robert Griffiths, Samuel Dequiedt, et al.. Evaluation of the ISO standard 11063 “Soil DNA Extraction Procedure” for Assessing Microbial Abundance and Community Structure. 14. International Symposium on Microbial Ecology (ISME 14), Aug 2012, Copenhague, Denmark. ⟨hal-01208715⟩

Sébastien Terrat, Richard Christen, Samuel Dequiedt, Christophe Mougel, Mélanie Lelievre, et al.. Influence of Soil DNA Extraction Procedure to Assess Bacterial Diversity using Pyrosequencing of 16S rDNA. NENUN ISME-Workshop: Extraction of Microbial DNA & RNA in Environmental Samples, Aug 2012, Copenhague, Denmark. ⟨hal-01208718⟩

Philippe Lemanceau, Dominique Arrouays, Mark J. Bailey, Antonio Bispo, Marc Buee, et al.. Monitoring microbial diversity in European soils: ongoing projects and challenges. 6. SETAC (Society of Environmental Toxicology and Chemistry)World Congress, SETAC Europe 22nd annual meeting, Securing a sustainable future: Integrating science, policy and people, May 2012, Berlin, Germany. 119 p. ⟨hal-01268308⟩

Clémentine Lepinay, Thierry Rigaud, Christophe Salon, Philippe Lemanceau, Christophe Mougel. Costs-benfits trade-off in the intercation between Medicago truncatula and Pseudomonas fluorescens C7R12 across atmospheric carbon dioxide modulation. Rhizosphere 3, University of Western Australia. Saisissez le nom du laboratoire, du service ou du département., Perth, AUS., Sep 2011, Perth, Australia. 1 p. ⟨hal-00999982⟩

Pierre Plassart, Sébastien Terrat, Mélanie Lelievre, Tiffanie Regnier, Samuel Dequiedt, et al.. Vers une optimisation de la procédure d'extraction d'ADN des sols pour caractériser la diversité microbienne tellurique par le pyroséquençage des gènes ribosomiques. 5ième colloque de l’Association Francophone Ecologie Microbienne (AFEM), Ville service., Nov 2011, Hammamet, Tunisie. 1 p. ⟨hal-01231285⟩

Anouk Zancarini, Christophe Mougel, Christophe Salon, Nathalie Munier-Jolain. Combining ecophysiological and microbial ecological approaches to assess interaction between genotypes of Medicago truncatula and the soil bacterial communities. Rhizosphere 3 International Conference, Sep 2011, Perth, Australia. ⟨hal-02744462⟩

Sébastien Terrat, Richard Christen, Samuel Dequiedt, Pierre-Alain Maron, Christophe Mougel, et al.. Apport des nouvelles générations de séquençage pour accéder à la diversité des communautés microbiennes du sol : nécessité d’un ‘pipeline’ bio-informatique pour les biologistes. 1ères Rencontres bioinformaticiens et statisticiens de l’INRA, Mar 2011, Versailles, France. 1 p. ⟨hal-01137014⟩

Anne-Sophie Voisin, Jacques Guéguen, Christian Huyghe, Marie-Helene Jeuffroy, Marie-Benoît Magrini, et al.. Quel renouvellement des questions de recherches sur les légumineuses ?. Atelier de réflexion pour un renouvellement des questions de recherche sur les légumineuses : du gène à la filière, Sep 2011, Dijon, France. 4 p. ⟨hal-01003340⟩

Anne-Sophie Voisin, Julie Gueguen, Christian Huyghe, Marie-Helene Jeuffroy, Marie-Benoît Magrini, et al.. Quel renouvellement des questions de recherche sur les légumineuses ?. Workshop légumineuses: Atelier de réflexion pour un renouvellement des questions de recherche sur les Légumineuses : du gène à la filière, Sep 2011, Dijon, France. 4 p. ⟨hal-02804480⟩

Sébastien Terrat, Richard Christen, Samuel Dequiedt, Christophe Mougel, Mélanie Lelievre, et al.. Influence of Soil DNA Extraction Procedure to Assess Bacterial Diversity using Pyrosequencing of 16S rDNA. 6. ISMOM: International Symposium of Interactions of Soil Minerals withOrganic Components and Microorganisms.3. InterCongress of Commission 2.5 IUSSSoil chemical, physical and biological interfacial reactions, Labo/service de l'auteur, Ville service, Pays service., Jun 2011, Montpellier, France. ⟨hal-02746836⟩

Anouk Zancarini, Christophe Mougel, Christophe Salon, Nathalie Munier-Jolain. Crosstalks between soil microbial communities and a nitrogen fixing legume species (medicago truncatula) during its Vegetative Stage. 5. International Food Legumes Research Conference (IFLRC V) and 7. European Conference on Grain Legumes (AEPVII) ; Legumes for Global Health Legume Crops and Products for Food, Feed and Environmental Benefits, Apr 2010, Antalya, Turkey. ⟨hal-02753416⟩

Anouk Zancarini, Christophe Mougel, Christophe Salon, Nathalie Munier-Jolain. Etude de l’interaction « Plante x Communauté microbienne du sol » chez l’espèce modèle Medicago truncatula. 16eme Forum des Jeunes Chercheurs, Jun 2010, Besançon, France. 16 p. ⟨hal-02822520⟩

Philippe Lemanceau, Gérard Vansuyt, Laure Avoscan, Eric Bernaud, Thérèse Corberand, et al.. Iron dynamics in the rhizosphere as a case study for analysing interactions among soils, plants and microbes. 8. International PGPR Workshop, May 2009, Portland, United States. n.p. ⟨hal-02820723⟩

Samuel Dequiedt, Mélanie Lelievre, Pierre-Alain Maron, Christophe Mougel, Nicolas Chemidlin Prévost-Bouré, et al.. Platform GenoSol: a new tool for conserving and exploring soil microbial diversity. 4ème Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM), Aug 2009, Lyon, France. 1 p. ⟨hal-01137004⟩

Amadou Sarr, Laurent Philippot, Lionel Ranjard, Christophe Mougel, Veronique Edel-Hermann, et al.. Assessment of the impact of the cultivation of different cultivars of maize, including Bt-maize varieties, on soil- and plant-associated microbial and fungal functional communities. Monsanto Bt Maize Symposium, Saisissez le nom du laboratoire, du service ou du département., Ville service., Mar 2008, La Hulpe, Belgium. 1 p. ⟨hal-01001208⟩

Philippe Lemanceau, Gérard Vansuyt, Agnès Robin, Laure Avoscan, Sylvie Mazurier, et al.. Implication of pyoverdines in the interactions of fluorescent pseudomonads with soil microflora and plant in the rhizosphere. 9. International Congress of Plant Pathology ICPP 2008, Aug 2008, Turin, Italy. ⟨hal-02819512⟩

Amandine Viollet, Thérèse Corberand, Agnès Robin, Christophe Mougel, Philippe Lemanceau, et al.. Association préférentielle entre les mycorhizes à arbuscules et les pseudomonas saprophytes présentant des systèmes de sécrétion de type III. Journées Francophones Mycorhizes, Sep 2008, Dijon, France. 47 p. ⟨hal-02757118⟩

Philippe Lemanceau, Gérard Vansuyt, Agnès Robin, Laure Avoscan, Sylvie Mazurier, et al.. Reciprocal interactions between plants and fluorescent pseudomonads in relation with iron in the rhizosphere. 12. International Symposium on Micropial Ecology - ISME 12, International Society for Microbial Ecology (ISME). Saisissez le nom du laboratoire, du service ou du département., Cairns, INT., Aug 2008, Cairns, Australia. ⟨hal-01001210⟩

Philippe Lemanceau, Agnès Robin, Gérard Vansuyt, Sylvie Mazurier, Christophe Mougel, et al.. Reciprocal interactions between plants and fluorescent pseudomonads in relation with iron in the rhizosphere. XIII International Congress on Molecular Plant-Microbe Interactions, Jul 2007, Sorrento, Italy. ⟨hal-02815878⟩

Pierre Offre, Barbara Pivato, Sylvie Mazurier, Séverine Siblot, Thérèse Corberand, et al.. Effect of arbuscular mycorrhiza establishment on the genetic structure and diversity of bacteria in the rhizosphere of Medicago truncatula. Buffon Legacy Conference, Sep 2007, Dijon, France. ⟨hal-02753073⟩

Cécile Rangin, Gilles Béna, Brigitte Brunel, Marie-Mathilde Perrineau, Lucette Mauré, et al.. How genetic pressure of [i]Medicago trunculata[/i] acts on the molecular selection and population pattern of its favourite symbiotic bacteria, [i]Sinorhizobium[/i] sp.?. International Conference Rhizosphere 2, Aug 2007, Montpellier, France. 1 p. ⟨hal-01190292⟩

Philippe Lemanceau, Gérard Vansuyt, Agnès Robin, Sylvie Mazurier, Christophe Mougel. Reciprocal interactions between plants and fluorescent pseudomonads in relation with iron in the rhizosphere. In Buffon Legacy Conference, Sep 2007, Dijon, France. ⟨hal-02754879⟩

Barbara Pivato, Sylvie Mazurier, Philippe Lemanceau, Séverine Siblot, Graziella Berta, et al.. Medicago species affect the community composition of arbuscular mycorrhizal fungi associated with roots. International Conference "Rhizosphere 2", Aug 2007, Montpellier, France. ⟨hal-02758002⟩

Pierre Offre, Barbara Pivato, Sylvie Mazurier, Séverine Siblot, Philippe Lemanceau, et al.. Populations bactériennes associées aux racines mycorhizées de Medicago truncatula: de la communauté à la souche bactérienne. Réseau Ecologie des Interactions Durables (REID), Institut National de la Recherche Agronomique (INRA). Saisissez le nom du laboratoire, du service ou du département., Ville service, FRA., Jan 2007, Brest, France. 1 p. ⟨hal-00956065⟩

Philippe Lemanceau, Sylvie Mazurier, Christophe Mougel, Pierre Offre, Barbara Pivato, et al.. Toward an integrated approach for studying plant-microbe interactions in the rhizosphere: from genomic to proteomic. 2nd annual meeting of the Dutch Ecogenomics Research Program ‘Assessing the living soil’ Royal Sciences Academy of The Netherlands, Apr 2006, Amsterdam, Netherlands. ⟨hal-02819016⟩

Philippe Lemanceau, Sylvie Mazurier, Christophe Mougel, Pierre Offre, Barbara Pivato, et al.. Interactions durables entre plantes et microorganismes dans les sols. Réseau Ecologie des Interactions Durables (REID), Jan 2006, Dijon, France. ⟨hal-02823861⟩

S. Hauser, M. Stevens, Christophe Mougel, Etienne Herrbach, H. Smith, et al.. La variabilité biologique, sérologique et moléculaire des lutéovirus pathogènes vis-à-vis de la betterave, permet la caractérisation de trois espèces virales distinctes. 7. Rencontres de virologie végétale, Mar 1999, Aussois, France. ⟨hal-02771425⟩

S. Hauser, M. Stevens, Christophe Mougel, Etienne Herrbach, H. Smith, et al.. Etude phylogénétique des luteoviridae pathogènes pour la betterave sucrière. 1. Journées francophones de virologie, Apr 1999, Paris, France. ⟨hal-02837857⟩

Olivier Lemaire, Etienne Herrbach, Christophe Mougel, Catherine Reinbold, Yves Bouchery, et al.. Serological and genomic variability of sugar beet-infecting beet mild yellowing luteovirus (BMYV) isolates and discrimination with another related luteovirus. 2. Colmar symposium for biological sciences, May 1996, Colmar, France. pp.92. ⟨hal-02837519⟩

Cervin Guyomar, Wesley Delage, Fabrice Legeai, Christophe Mougel, Jean-Christophe Simon, et al.. Reference guided genome assembly in metagenomic samples. RECOMB 2018 - 22nd International Conference on Research in Computational Molecular Biology, Apr 2018, Paris, France. pp.1. ⟨hal-01934823⟩

Samuel Jacquiod, Ruben Puga Freitas, Aymé Spor, Arnaud Mounier, Cécile Monard, et al.. Evidence of a core microbiota shaped by plant and earthworm interactions across soils. 17. International Society of Microbial Ecology (ISME17), Aug 2018, Leipzig, Germany. 2018. ⟨hal-02785624⟩

Cervin Guyomar, Fabrice Legeai, Christophe Mougel, Claire Lemaitre, Jean-Christophe Simon. Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches. JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France. ⟨hal-01638884⟩

J. Denonfoux, C. Wahl, Jean-Pierre Gauthier, Y. Laurent, Lionel Lebreton, et al.. Optimized and standardized 192-plex solution for 16S rDNA gene sequencing on Illumina Miseq platform to assess soil biodiversity. 1. Global Soil Biodiversity Initiative Conference (GSBI), Dec 2014, Dijon, France. 703 p., 2014. ⟨hal-01208772⟩

Clémentine Lepinay, Céline Faivre-Primot, Florence Deau, Julie Aubert, Sébastien Terrat, et al.. Soil microbial diversity effects on primary production and symbiotic interactions. 32. New Phytologist Symposium. Plant interactions with other organisms: molecules, ecology and evolution, Nov 2013, Buenos Aires, Argentina. 2013. ⟨hal-01197630⟩

Samuel Dequiedt, Mélanie Lelievre, Pierre-Alain Maron, Christophe Mougel, Fabien Morin, et al.. Plateforme GenoSol : une structure logistique d'appui à la recherche sur la microbiologie des sols et de l'environnement. Workshop Interactions des Microorganismes avec leurs Environnements: Circulation, Adaptation, Jun 2012, Dijon, France. 2012, Interactions des microorganismes avec leurs environements : circulation, adaptation. ⟨hal-01208689⟩

Amandine Viollet, Thérèse Corberand, Christophe Mougel, Laure Avoscan, Gérard Vansuyt, et al.. Influence du système de sécrétion de type III bactérien dans les intéractions plantes-Pseudomonas spp. fluorescents non pathogènes. Workshop Interactions des Microorganismes avec leurs Environnements : Circulation, Adaptation, Jun 2012, Dijon, France, 6-7 juin 2012, France. 2012. ⟨hal-01208713⟩

Sébastien Terrat, Pierre Plassart, Richard Christen, Samuel Dequiedt, Mélanie Lelievre, et al.. Optimisation du pyroséquençage haut-débit pour caractériser la diversité taxonomique des communautés bactériennes des sols. Ecole Thématique Expert Génomique Environnementale ETEGE, Apr 2012, Aussois, France. 2012. ⟨hal-01208717⟩

Sébastien Terrat, Samuel Dequiedt, Dipankar Bachar, Richard Christen, Christophe Mougel, et al.. Deep sequencing of 16S rRNA gene to efficiently assess bacterial richness and the rare biosphere in soils. 14. International Symposium on Microbial Ecology (ISME 14), Aug 2012, Copenhague, Danemark, Netherlands. 1 p., 2012. ⟨hal-02806957⟩

Pierre Plassart, Sébastien Terrat, Rob I. Griffiths, Bruce Thomson, Mélanie Lelievre, et al.. Vers une optimisation de la procédure d’extraction d’ADN des sols pour caractériser la diversité microbienne tellurique par le pyroséquençage des gènes ribosomiques. Workshop Interactions des microorganismes avec leurs environnements: circulation, adaptation, Jun 2012, Dijon, France. 2012. ⟨hal-01208712⟩

Sébastien Terrat, Pierre Plassart, R. Christen, Samuel Dequiedt, Tiffanie Régnier, et al.. Optimisation du pyroséquençage haut-débit pour caractériser la diversité taxonomique des communautés bactériennes des sols. Colloque Génomique Environnementale, Nov 2011, Ecully, France. 1 p., 2011. ⟨hal-02807955⟩

Philippe Lemanceau, Sylvie Mazurier, Christophe Mougel, Pierre Offre, Barbara Pivato, et al.. Description of a strategy for analyzing the feedback loop of the interactions between plants, arbuscular mycorrhizal fungi and bacteria. Ecology of Soil Microorganisms Conference, Apr 2011, Prague, Czech Republic. 121 p., 2011. ⟨hal-02747493⟩

Anouk Zancarini, Christophe Mougel, Christophe Salon, Nathalie Munier-Jolain. Combining ecophysiological and microbial ecological approaches to assess interaction between genotypes of Medicago truncatula and the soil bacterial communities. 17eme Forum des Jeunes Chercheurs "Jeunes chercheurs, explorons la bulle professionnelle", Jun 2011, Dijon, France. 155 p., 2011. ⟨hal-02749671⟩

Sébastien Terrat, Pierre Plassart, R. Christen, Samuel Dequiedt, Tiffanie Régnier, et al.. Optimisation du pyroséquençage haut-débit pour caractériser la diversité taxonomique des communautés bactériennes des sols. 5ième colloque de l’Association Francophone Ecologie Microbienne (AFEM), Nov 2011, Hammamet, Tunisie. 1 p., 2011. ⟨hal-02808211⟩

Amandine Viollet, Thérèse Corberand, Adeline Robin, Christophe Mougel, Philippe Lemanceau, et al.. Arbuscular mycorrhizae influence the occurence of soil fluorescent pseudomonads harbouring type III secretion systems. Bageco 10 - Bacterial genetics and ecology, Jun 2009, Uppsala, Sweden. 1p., 2009. ⟨hal-02755399⟩

Samuel Dequiedt, Mélanie Lelievre, Pierre-Alain Maron, Christophe Mougel, Nicolas Chemidlin Prévost-Bouré, et al.. Platform GenoSol: a new tool for conserving and exploring soil microbial diversity. 10. Symposium on Bacterial Genetics and Ecology - Coexisting on a Changing Planet (BAGECO 10), Jun 2009, Uppsala, Sweden. 18 p., 2009. ⟨hal-02752945⟩

Pierre Offre, Barbara Pivato, Sylvie Mazurier, Séverine Siblot, Thérèse Corberand, et al.. Comparison of the genetic structure and diversity of bacteria associated with mycorrhized and non-mycorrhized roots of Medicago truncatula. International Conference Rhizosphere 2, Aug 2007, Dijon, France. 1 p., 2007. ⟨hal-02751762⟩

Christophe Mougel, I.B. Zhulin. Comment les bactéries perçoivent et répondent aux modifications de leur environnement ? Génomique comparative des systèmes à deux composantes bactériens : organisation, distribution et fonction. 3. Colloque Rhizosphère, Nov 2001, Dijon, France. 1 p., 2001. ⟨hal-02826749⟩

Philippe Lemanceau, Pierre-Alain Maron, Sylvie Mazurier, Christophe Mougel, Laurent Philippot, et al.. Qu’attendre des recherches en microbiologie du sol ?. Fertilisation et environnement. Quelles pistes pour l'aide à la décision ?, Chapitre 10, Editions Quae ACTA, le réseau des instituts des filières animales et végétales, pp.288, 2014, Matière à Débattre et Décider, 978-2-7592-2055-7 978-2-85794-280-1. ⟨hal-02797138⟩

Anouk Zancarini, Clémentine Lépinay, Judith Burstin, Gérard Duc, Philippe Lemanceau, et al.. Combining molecular microbial ecology with ecophysiology and plant genetics for a better understanding of plant-microbial communities' interactions in the rhizosphere.. F.J. de Bruijn. Molecular Microbial Ecology of the Rhizosphere, 1, Wiley-Blackwell, pp.69-86, 2013, 978-1-118-29617-2. ⟨10.1002/9781118297674.ch7⟩. ⟨hal-01119954⟩

Lionel Ranjard, Samuel Dequiedt, Claudy Jolivet, Nicolas Saby, Jean Thioulouse, et al.. Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative. Sustainable Agriculture Volume 2, Springer, pp.857-865, 2011, 978-94-007-0393-3. ⟨10.1007/978-94-007-0394-0_37⟩. ⟨hal-00860770⟩

P. Lemanceau, P. Offre, C. Mougel, E. Gamalero, Y. Dessaux, et al.. Microbial ecology of the rhizosphere. Microbiological methods for assessing soil quality, CABI Publishing, pp.228-230, 2006. ⟨hal-00119328⟩

Philippe Lemanceau, Pierre Offre, Christophe Mougel, Elisa Gamalero, Yves Dessaux, et al.. Microbial ecology of the rhizosphere. Microbiological methods for assessing soil quality, 2005. ⟨hal-02832084⟩

Christophe Salon, Christian Jeudy, Céline Bernard, Christophe Mougel, Arnaud Coffin, et al.. Brevet INRA, INOVIAFLOW «Rhizotron et utilisations de celui-ci». N° de brevet: EP 2 679 088 A1. 2012, 28p. ⟨hal-02801042⟩

Gérard Paillard, Philippe Lemanceau, Samuel Dequiedt, Christian Steinberg, Judith Burstin, et al.. Le Centre Inra de Dijon. 2012. ⟨hal-02810526⟩

Florent Guinot, Marie Szafranski, Julien Chiquet, Anouk Zancarini, Christine Le Signor, et al.. Fast Computation of Genome-Metagenome Interaction Effects. 2020. ⟨hal-01906069v3⟩

Stéphanie Daval, Kevin Gazengel, Arnaud Belcour, Juliette Linglin, Yvonne Guillerm-Erckelboudt, et al.. Soil microbiota influences clubroot disease by modulating Plasmodiophora brassicae and Brassica napus transcriptomes. 2020. ⟨hal-02487262⟩

Christophe Mougel. Effet de la rotation des cultures sur la microflore du sol et son activité. 06516CP015S250, 2009. ⟨hal-02820219⟩

Christophe Mougel. Dynamique des intéractions plante-microorganismes dans la rhizosphère: vers une meilleure prise en compte du fonctionnement de la plante et conséquence évolutive. Sciences du Vivant [q-bio]. Université de Bourgogne, 2010. ⟨tel-02815117⟩