Nombre de documents

146

CV de Christophe Godin


Communication dans un congrès49 documents

  • Christophe Godin, Frédéric Boudon, Christophe Pradal. Reducing algorithm complexity in trees. 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. <http://www.fspma2016.net>. <hal-01398289>
  • Guillaume Cerutti, Sophie Ribes, Christophe Godin, Carlos Galvan Ampudia, Teva Vernoux. 3D Tessellation of Plant Tissue A dual optimization approach to cell-level meristem reconstruction from microscopy images. International Conference on 3D Vision, Oct 2015, Lyon, France. <10.1109/3DV.2015.57>. <hal-01246580>
  • Ibrahim Cheddadi, Christophe Godin, Frédéric Boudon, Valentina Baldazzi, Michel Génard, et al.. Toward a mechanical model of 3D fruit development. International Symposium on Modelling in Fruit Research and Orchard Management, Jun 2015, Montpellier, France. <http://www.ishs.org/symposium/462>. <hal-01237387>
  • Léo Guignard, Christophe Godin, Ulla-Maj Fiuza, Lars Hufnagel, Patrick Lemaire, et al.. Spatio-temporal registration of embryo images. ISBI - International Symposium on Biomedical Imaging, Apr 2014, Pekin, China. IEEE, 2014. <hal-00919142>
  • Julien Diener, Phillipe Nacry, Christophe Périn, Anne Diévart, Xavier Draye, et al.. An automated image-processing pipeline for high-throughput analysis of root architecture in OpenAlea. Risto Sievänen and Eero Nikinmaa and Christophe Godin and Anna Lintunen and Pekka Nygren. 7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.85-87, 2013, <http://www.metal.fi/fspm2013/proceedings>. <hal-00850814>
  • Frédéric Boudon, Chakkrit Preuksakarn, Pascal Ferraro, Julien Diener, Ekko Nikinmaa, et al.. Quantitative assessment of automatic reconstructions of branching systems. Risto Sievänen and Eero Nikinmaa and Christophe Godin and Anna Lintunen and Pekka Nygren. 7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.64-66, 2013, Proceedings of the 7th International Conference on Functional-Structural Plant Models. <http://www.metal.fi/fspm2013/proceedings>. <hal-00850796>
  • Mikolaj Cieslak, M. Génard, Frédéric Boudon, Valentina Baldazzi, Christophe Godin, et al.. Integrating architecture and physiological perspectives in fruit development. Risto Sievänen and Eero Nikinmaa and Christophe Godin and Anna Lintunen and Pekka Nygren. 7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.127-130, 2013, Proceedings of the 7th International Conference on Functional-Structural Plant Models. <http://www.metal.fi/fspm2013/proceedings>. <hal-00850801>
  • Mathilde Balduzzi, Frédéric Boudon, Christophe Godin. Optimal 3D reconstruction of plants canopy from terrestrial laser scanner data by fusion of the 3D point information and the intensity value. Risto Sievänen and Eero Nikinmaa and Christophe Godin and Anna Lintunen and Pekka Nygren. 7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.58-60, 2013, Proceedings of the 7th International Conference on Functional-Structural Plant Models. <http://www.metal.fi/fspm2013/proceedings>. <hal-00850793>
  • Christophe Pradal, Julien Coste, Frédéric Boudon, Christian Fournier, Christophe Godin. OpenAlea 2.0: Architecture of an integrated modeling environment on the web. Risto Sievänen and Eero Nikinmaa and Christophe Godin and Anna Lintunen and Pekka Nygren. 7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.213, 2013, Proceedings of the 7th International Conference on Functional-Structural Plant Models. <http://www.metal.fi/fspm2013/proceedings>. <hal-00850931>
  • Samir Kenouche, Joulia Larionova, Nacer Bezzi, Yannick Guari, Nadia Bertin, et al.. NMR investigations of functionalized magnetic nanoparticles Fe3O4 as T1 - T2 contrast agents. 7ème colloque Science et Technologie des poudres, Jul 2012, France. pp.33, 2012. <hal-00735403>
  • Mikolaj Cieslak, Frédéric Boudon, Samir Kenouche, Michel Zanca, Christophe Goze-Bac, et al.. Generating 3D volumetric meshes of internal and external fruit structure. HortiModel2012 -- Models for Plant Growth, Environmental Control and Farm Management in Protected Cultivation. Acta Horticulturae., 2012, Nanjing, China. International Society for Horticultural Science, 978-90-66055-15-5, 957, 2012, Acta Horticulturae. <hal-00828843>
  • Damien Fumey, Pierre-Eric Lauri, Yann Guédon, Christophe Godin, Evelyne Costes. Effects of pruning on the apple tree: from tree architecture to modeling. 9. International Symposium ISHS Acta Horticulturae, Aug 2011, Geneva, United States. ISHS - International Society for Horticultural Science, 903, pp.597-602, 2011, Acta Horticulturae. <hal-01000198>
  • Jérôme Chopard, Christophe Pradal, Daniel Barbeau, Thomas Cokelaer, Christophe Godin. Scientific workflow for reusing plant/FSPM models. Chan, F. and Marinova, D. and Anderssen, R.S. MODSIM2011. 19th International Congress on Modelling and Simulation, Dec 2011, Perth, Australia. pp.968-974, 2011, MODSIM2011. 19th International Congress on Modelling and Simulation. <hal-00790635>
  • Mikolaj Cieslak, Michel Génard, Samir Kenouche, Christophe Goze-Bac, Christophe Godin, et al.. Towards a 3D virtual fruit model integrating fruit architecture and physiology. 9th International Symposium on Modelling in Fruit Research and Orchard Management, 2011, Saint-Jean-sur-Richelieu, Canada. 2011. <hal-00828859>
  • Yassin Refahi, Etienne Farcot, Yann Guédon, Fabrice Besnard, Teva Vernoux, et al.. A Combinatorial Model of Phyllotaxis Perturbations in Arabidopsis thaliana. 22nd Annual Symposium on Combinatorial Pattern Matching, Palermo, Italy, 2011, Palermo, Italy. 6661, pp.323--335, 2011, Lecture Notes in Computer Science - LNCS. <hal-00828852>
  • Jérôme Chopard, Christophe Godin. The role of mechanics in morphogenesis. DeJong, Theodore and Da Silva, David. 6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.135-137, 2010. <hal-00831791>
  • Yassin Refahi, Yann Guédon, Fabrice Besnard, Etienne Farcot, Christophe Godin, et al.. Analyzing perturbations in phyllotaxis of Arabidopsis thaliana. DeJong, Theodore and Da Silva, David. 6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.185-187, 2010. <hal-00831773>
  • Thomas Cokelaer, Damien Fumey, Yann Guédon, Evelyne Costes, Christophe Godin. Competition-based Model of Pruning: Applications to Apple Trees. DeJong, Theodore and Da Silva, David. 6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.87-89, 2010. <hal-00831776>
  • Frédéric Boudon, Thomas Cokelaer, Christophe Pradal, Christophe Godin. L-Py, an open L-systems framework in Python. DeJong, Theodore and Da Silva, David. 6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.116-119, 2010. <hal-00831780>
  • Wojciech Palubicki, Christophe Godin, Premyslaw Prusinkiewicz. Towards a quantitative assessment of architectures for FSPM. DeJong, Theodore and Da Silva, David. 6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.7-9, 2010. <hal-00831792>
  • Gaëtan Louarn, Didier Combes, David Da Silva, Christophe Godin. Reconstruction methods to estimate light partitioning among individual plants in crowded canopies. DeJong, Theodore and Da Silva, David. 6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.67-69, 2010. <hal-00831790>
  • Anne-Laure Gaillard, Pascal Ferraro, Frédéric Boudon, Christophe Godin. Lossy compression of tree architectures. DeJong, Theodore and Da Silva, David. 6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.12-15, 2010. <hal-00831783>
  • Christophe Pradal, Thomas Cokelaer, Daniel Barbeau, Eric Moscardi, Jérôme Chopard, et al.. Modeling Strategies Using Visual Programming in OpenAlea. DeJong, Theodore and Da Silva, David. 6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.101-103, 2010. <hal-00831785>
  • Christian Cilas, Christophe Godin, Benoit Bertrand, Christophe Montagnon, Henri Baillères. Genetic Study on Several Mechanical Properties of the Wood of Coffea arabica and Coffea canephora Coffee Trees. International Conference on Coffee Science, Oct 2010, Bali, Indonesia. ASIC, pp.638-642, 2010, 23rd International Conference on Coffee Science. <http://www.asic-cafe.org/fr/proceedings/3592/toc>. <hal-00850923>
  • Anne-Laure Gaillard, Pascal Ferraro, Frédéric Boudon, Christophe Godin. Lossy compression of plant architectures. 6th International Workshop on Functional-Structural Plant Models, Sep 2010, Davis, United States. pp.10--13, 2010. <hal-00490061>
  • Chakkrit Preuksakarn, Frédéric Boudon, Pascal Ferraro, Jean-Baptiste Durand, Ekko Nikinmaa, et al.. Reconstructing Plant Architecture from 3D Laser scanner data. 6th International Workshop on Functional-Structural Plant Models, Sep 2010, Davis, United States. pp.12--17, 2010. <hal-00490064>
  • Christian Fournier, Christophe Pradal, Michael Chelle, Frédéric Boudon, Gaëtan Louarn, et al.. Sharing efforts for modelling plant systems: from publications to reusable software components. Comparative Biochemistry and Physiology - Part A: Molecular& Integrative Physiology, 2009, Glasgow, United Kingdom. Elsevier, 153, pp.S222, 2009, Abstracts of the Annual Main Meeting of the Society of Experimental Biology. <10.1016/j.cbpa.2009.04.549>. <hal-00831802>
  • Dong-Ming Yan, Julien Wintz, Bernard Mourrain, Wenping Wang, Frédéric Boudon, et al.. Efficient and robust reconstruction of botanical branching structure from laser scanned points. D. Thaimann. CAD/Graphics 2009, Aug 2009, Yellow Mountain City, China. IEEE Press, pp.572-575, 2009. <inria-00436480>
  • Damien Fumey, Pierre-Eric Lauri, Yann Guédon, Christophe Godin, Evelyne Costes. Effects of pruning on the apple tree: from tree architecture to modeling. 9th International Symposium on Integrating Canopy, Rootstock and Environmental Physiology in Orchard Systems, 2008, Geneva, New York, United States. 2008. <hal-00838833>
  • Christophe Godin, Pascal Ferraro. Self-similar Analysis of Plant Architecture Reveals Hierarchical Classes of Meristem States. 5th International Workshop on Functional Structural Plant Models, Nov 2007, Napier, New Zealand. pp.481--484, 2007. <hal-00306626>
  • Mikaël Lucas, Laurent Laplaze, Christian Jay-Allemand, Christophe Godin. Modeling auxin fluxes and Arabidopsis root ramification at different scales. 5th International Workshop on Functional-Structural Plant Models, 2007, Napier, New Zealand. pp.11, 1--3, 2007. <hal-00831821>
  • Colin Smith, Christophe Godin, Yann Guédon, Premyslaw Prusinkiewicz, Evelyne Costes. Simulation of apple tree development using mixed statistical and biomechanical models. 5th International Workshop on Functional-Structural Plant Models, 2007, Napier, New Zealand. pp.31, 1--4, 2007. <hal-00831828>
  • Szymon Stoma, Jérôme Chopard, Christophe Godin, Jan Traas. Using mechanics in the modelling of meristem morphogenesis. 5th International Workshop on Functional-Structural Plant Models, 2007, Napier, New Zealand. pp.52, 1--4, 2007. <hal-00831832>
  • Jérôme Chopard, Christophe Godin, Jan Traas. Towards a formal expression of morphogenesis: a mechanics based integration of cell growth at tissue scale. Crook, Nigel and olde Scheper, Tjeerd. Proceedings of the 7th International Workshop on Information Processing in Cells and Tissues, 2007, Oxford, United Kingdom. librix.eu, pp.387-399, 2007. <hal-00831831>
  • David Da Silva, Philippe Balandier, Frédéric Boudon, André Marquier, Christophe Pradal, et al.. Modeling of light transmission under heterogeneous forest canopy: model description and validation. 5th International Workshop on Functional-Structural Plant Models, 2007, Napier, New Zealand. pp.58, 1--4, 2007. <hal-00831822>
  • Samuel Dufour-Kowalski, Christophe Pradal, Nicolas Dones, Pierre Barbier de Reuille, Frédéric Boudon, et al.. OpenAlea: An open-source platform for the integration of heterogeneous FSPM components. FSPM07 - 5th International Workshop on Functional-Structural Plant Models, Nov 2007, Napier, New Zealand. pp.P36:1-2, 2007. <hal-00831824>
  • David Da Silva, Frédéric Boudon, Christophe Godin, Olivier Puech, Colin Smith, et al.. A Critical Appraisal of the Box Counting Method to Assess the Fractal Dimension of Tree Crowns. G. Bebis et al. Second International Symposium, ISVC 2006, 2006, France. Springer, pp.751-760, 2006, Lecture Notes in Computer Sciences, vol. 4291. <hal-00120795>
  • M. Renton, Evelyne Costes, Christophe Godin, Yann Guédon. Integrating markov chain models and L-systems to simulate the architectural development of apple trees. Braun, P. 7th International Symposium on Computer Modelling in Fruit Research and Orchard,, 2006, France. ISHS, pp.63-70, 2006, Acta Horticulturae, vol. 707. <hal-00120798>
  • Christophe Godin, Olivier Puech, Frédéric Boudon, Hervé Sinoquet. Space occupation by tree crowns obeys fractals laws: evidence from 3D digitized plants. 4th International Workshop on Functional-Structural Plant Models, 2004, Montpellier, France. pp.79-83, 2004. <hal-00830081>
  • Pascal Ferraro, Christophe Godin, Przemylaw Prusinkiewicz. A structural method for assessing self-similarity in plants. Fourth International Workshop on Functional-Structural Trees Models, Jun 2004, Montpellier, France. pp.56--61, 2004. <hal-00307405>
  • Pascal Ferraro, Przemyslaw Prusinkiewicz, Lars Munderman, Christophe Godin. L-systems and {MTG}s: Integrating Simulation and Formal Analysis of Architectural Plant Models. 16th European Simulation Multiconference, Modelling and Simulation, Jun 2002, Germany. pp.418--423, 2002. <hal-00306623>
  • Pascal Ferraro, Christophe Godin, Przemyslaw Prusinkiewicz, Lars Mundermann. Une méthode structurelle pour évaluer les propriétés d autosimilarité des plantes. Self Similarity And Applications Workshop, 2002, Clermont-Ferrand, France. 2002. <hal-00306622>
  • Abdallah Zemirline, Pascal Ballet, Lionel Marcé, Patrick Amar, Gilles Bernot, et al.. Cellular automata, reaction-diffusion and multiagents systems for artificial cell modelling. Amar, Patrick and Képès, François and Norris, Victor and Tracqui, Philippe. Actes du Colloque Modélisation et simulation de processus biologiques dans le contexte de la génomique, 2002, Autrans, France. pp.257-280, 2002. <hal-00827465>
  • Jean-Louis Giavitto, Christophe Godin, Olivier Michel, Premyslaw Prusinkiewicz. Computational models for integrative and developmental biology. Actes du Colloque Modélisation et simulation de processus biologiques dans le contexte de la génomique, 2002, Autrans, France. pp.43, 2002. <hal-00827466>
  • Pascal Ferraro, Przemylaw Prusinkiewicz, Lars Munderman, Christophe Godin. L-systems and MTGs: Integration of a simulation system to analyse plant models. Third International Workshop on Functional-Structural Trees Models, 2001, France. pp.11-12, 2001. <hal-00307404>
  • Pascal Ferraro, Christophe Godin. An algorithm for comparing unordered tree graphs based on a minimum cost mapping with minimal connectivity. Third Conference on orders, Algorithms and Applications, 1999, France. pp.115-116, 1999. <hal-00307410>
  • Pascal Ferraro, Christophe Godin. A distance measure between plant architectures based on the comparison of their topological structures. Second International Workshop on Functional-Structural Trees Models, 1998, Clermont-Ferrand, France. pp.11-12, 1998. <hal-00307411>
  • Pascal Ferraro, Christophe Godin. Un algorithme de comparaison d'arborescences non ordonnées appliqué à la comparaison de la structure topologique des plantes. SFC98 : Société Francophone de classification, 1998, Montpellier, France. pp.77--81, 1998. <hal-00307412>
  • Christophe Godin, Evelyne Costes. How to get representations of real plants in computers for exploring their botanical organisation. 4th Symposium on Computer Modelling in Fruit Research and Orchard Management, 1996, Avignon, France. ISHS, 416, pp.45-52, 1996, Acta Horticulturae. <hal-00827492>

Article dans une revue77 documents

  • Daniele Muraro, Antoine Larrieu, M. Lucas, J Chopard, H Byrne, et al.. A multi-scale model of the interplay between cell signalling and hormone transport in specifying the root meristem of Arabidopsis thaliana. Journal of Theoretical Biology, Elsevier, 2016, 404, pp.182 - 205. <10.1016/j.jtbi.2016.04.036>. <hal-01412252>
  • Mikolaj Cieslak, Ibrahim Cheddadi, Frédéric Boudon, Valentina Baldazzi, Michel Génard, et al.. Integrating Physiology and Architecture in Models of Fruit Expansion. Frontiers in Plant Science, Frontiers, 2016, 7, pp.19. <10.3389/fpls.2016.01739>. <hal-01400062>
  • Yassin Refahi, Géraldine Brunoud, Etienne Farcot, Alain Jean-Marie, Minna Pulkkinen, et al.. A stochastic multicellular model identifies biological watermarks from disorders in self-organized patterns of phyllotaxis. eLife, eLife Sciences Publication, 2016, 71, pp.50. <10.7554/eLife.14093.048>. <hal-01390155>
  • Carlos Galvan-­‐ampudia, Anaïs Chaumeret, Christophe Godin, Teva Vernoux. Phyllotaxis: from patterns of organogenesis at the meristem to shoot architecture. Wiley Interdisciplinary Reviews: Developmental Biology, Wiley, 2016, 5, pp.460 - 473. <10.1002/wdev.231>. <hal-01413095>
  • Christophe Godin. L'importance capitale du travail de fourmi des chercheurs. 1024 – Bulletin de la société informatique de France, société informatique de France, 2015, pp.10. <hal-01256863>
  • Frédéric Boudon, Jérôme Chopard, Olivier Ali, Benjamin Gilles, Olivier Hamant, et al.. A Computational Framework for 3D Mechanical Modeling of Plant Morphogenesis with Cellular Resolution. PLoS Computational Biology, Public Library of Science, 2015, 11 (1), pp.1-16. <10.1371/journal.pcbi.1003950>. <hal-01142486>
  • Samir Kenouche, Marine Perrier, Nadia Bertin, Joulia Larionova, Abderrahmanne Ayadi, et al.. In vivo quantitative NMR imaging of fruit tissues during growth using Spoiled Gradient Echo sequence. Magnetic Resonance Imaging, Elsevier, 2014, pp.1418-1427. <10.1016/j.mri.2014.08.005>. <hal-01065440>
  • Daniele Muraro, Nathan Mellor, Michael P. Pound, Hanna Help, Mikaël Lucas, et al.. Integration of hormonal signaling networks and mobile microRNAs is required for vascular patterning in Arabidopsis roots. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2014, 111 (2), pp.857-862. <10.1073/pnas.1221766111>. <hal-00941028>
  • Risto Sievänen, Christophe Godin, Ted De Jong, Eero Nikinmaa. Functional – structural plant models: a growing paradigm for plant studies. Annals of Botany, Oxford University Press (OUP), 2014, pp.599-603. <10.1093/aob/mcu175>. <hal-01075790>
  • Frédéric Boudon, Chakkrit Preuksakarn, Pascal Ferraro, Julien Diener, Philippe Nacry, et al.. Quantitative assessment of automatic reconstructions of branching systems obtained from laser scanning.. Annals of Botany, Oxford University Press (OUP), 2014, epub ahead of print. <10.1093/aob/mcu062>. <hal-01064917>
  • Olivier Ali, Vincent Mirabet, Christophe Godin, Jan Traas. Physical Models of Plant Development. Annual Review of Cell and Developmental Biology, Annual Reviews, 2014, 30 (1), pp.8. <10.1146/annurev-cellbio-101512-122410>. <hal-01090778>
  • Fabrice Besnard, Yassin Refahi, Valérie Morin, Benjamin Marteaux, Géraldine Brunoud, et al.. Cytokinin signalling inhibitory fields provide robustness to phyllotaxis. Nature, Nature Publishing Group, 2014, 505 (7483), pp.417-421. <http://www.nature.com/nature/journal/vaop/ncurrent/full/nature12791.html>. <10.1038/nature12791>. <hal-00926908>
  • Massimiliano Sassi, Olivier Ali, Frédéric Boudon, Gladys Cloarec, Ursula Abad, et al.. An Auxin-Mediated Shift toward Growth Isotropy Promotes Organ Formation at the Shoot Meristem in Arabidopsis. Current Biology - CB, Elsevier, 2014, 24 (19), pp.1 - 8. <10.1016/j.cub.2014.08.036>. <hal-01074821>
  • Yann Guédon, Yassin Refahi, Fabrice Besnard, Etienne Farcot, Christophe Godin, et al.. Pattern identification and characterization reveal permutations of organs as a key genetically controlled property of post-meristematic phyllotaxis. Journal of Theoretical Biology, Elsevier, 2013, 338, pp.94-110. <10.1016/j.jtbi.2013.07.026>. <hal-00859831>
  • Samir Kenouche, Joulia Larionova, Nacer Bezzi, Yannick Guari, Nadia Bertin, et al.. NMR investigation of functionnalized magnetic nanoparticles Fe3O4 as T1-T2 contrast agents. Powder Technology, Elsevier, 2013, pp.60-65. <10.1016/j.powtec.2013.07.038>. <hal-00881594>
  • Michael L. Walker, Etienne Farcot, Jan Traas, Christophe Godin. The Flux-Based PIN Allocation Mechanism Can Generate Either Canalyzed or Diffuse Distribution Patterns Depending on Geometry and Boundary Conditions. PLoS ONE, Public Library of Science, 2013, 8 (1), pp.1-16. <http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0054802>. <10.1371/journal.pone.0054802>. <hal-00850845>
  • Mikaël Lucas, Kim Kenobi, Daniel Von Wangenheim, Ute Voß, Kamal Swarup, et al.. Lateral root morphogenesis is dependent on the mechanical properties of the overlaying tissues. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2013, 110 (13), pp.5229-34. <10.1073/pnas.1210807110>. <cea-00848569>
  • Cédric Gaucherel, Frédéric Boudon, Thomas Houet, Mathieu Castets, Christophe Godin. Understanding patchy landscape dynamics: Towards a landscape language. PLoS ONE, Public Library of Science, 2012, 7 (9), pp.16. <10.1371/journal.pone.0046064>. <halshs-00750971>
  • Frédéric Boudon, Christophe Pradal, Thomas Cokelaer, Przemyslaw Prusinkiewicz, Christophe Godin. L-Py: an L-system simulation framework for modeling plant architecture development based on a dynamic language. Frontiers in Plant Science, Frontiers, 2012, 3 (76), doi: 10.3389/fpls.2012.00076. <10.3389/fpls.2012.00076>. <cirad-00703085>
  • David Da Silva, Philippe Balandier, Frédéric Boudon, André Marquier, Christophe Godin. Modeling of light transmission under heterogeneous forest canopy: an appraisal of the effect of the precision level of crown description. Annals of Forest Science, Springer Verlag/EDP Sciences, 2012, 69 (2), pp.181-193. <10.1007/s13595-011-0139-2>. <hal-00828845>
  • Gaëtan Louarn, David Da Silva, Christophe Godin, Didier Combes. Simple envelope-based reconstruction methods can infer light partitioning among individual plants in sparse and dense herbaceous canopies. Agricultural and Forest Meteorology, Elsevier Masson, 2012, 166-167, pp.98-112. <10.1016/j.agrformet.2012.06.014>. <hal-00828848>
  • James Murray, Angharad Jones, Christophe Godin, Jan Traas. Systems analysis of shoot apical meristem growth and development: integrating hormonal and mechanical signaling. The Plant cell, American Society of Plant Biologists (ASPB), 2012, <10.1105/tpc.112.102194>. <hal-00828849>
  • Leach R. Band, John A. Fozard, Christophe Godin, Olivier E. Jensen, Tony Pridmore, et al.. Multiscale systems analysis of root growth and development: modeling beyond the network and cellular scales. The Plant cell, American Society of Plant Biologists (ASPB), 2012, 14 (10), pp.3892-3906. <10.1105/tpc.112.101550>. <hal-00828879>
  • Damien Fumey, Pierre-Eric Lauri, Yann Guédon, Christophe Godin, Evelyne Costes. How young trees cope with the removal of whole or part of shoots: an analysis of local and distant responses to pruning in 1-year-old apple (Malus × domestica; Rosaceae) trees. American Journal of Botany, Botanical Society of America, 2011, 98 (11), pp.1737--1751. <10.3732/ajb.1000231>. <hal-00859704>
  • Camillo La Rota, Jérôme Chopard, Pradeep Das, Sandrine Paindavoine, Frédérique Rozier, et al.. A data-driven integrative model of sepal primordium polarity in Arabidopsis. The Plant cell, American Society of Plant Biologists (ASPB), 2011, 23 (12), pp.4318-433. <10.1105/tpc.111.092619>. <hal-00828854>
  • H. K. Mebatsion, Frédéric Boudon, Christophe Godin, Christophe Pradal, M. Genard, et al.. A novel profile based model for virtual representation of quasi-symmetric plant organs. Computers and Electronics in Agriculture, Elsevier, 2011, 75, pp.113-124. <10.1016/j.compag.2010.10.006>. <hal-00657898>
  • Teva Vernoux, Géraldine Brunoud, Etienne Farcot, Valérie Morin, Hilde Daele, et al.. The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Molecular Systems Biology, EMBO Press, 2011, 7 (508), <10.1038/msb.2011.39>. <hal-00828880>
  • R. Fernandez, Pradeep Das, V. Mirabet, E. Moscardi, Jan Traas, et al.. Imaging plant growth in 4D : robust tissue reconstruction and lineaging at cell resolution.. Nature Methods, Nature Publishing Group, 2010, pp.547-553. <hal-00521491>
  • Christophe Godin, Jan Traas. Du gène à la fleur. Les Cahiers de l'INRIA - La Recherche, INRIA, 2010, Les 10 découvertes de l'année. <inria-00511497>
  • Christophe Godin, Pascal Ferraro. Quantifying the degree of self-nestedness of trees: application to the structural analysis of plants. IEEE/ACM Transactions on Computational Biology and Bioinformatics, Institute of Electrical and Electronics Engineers, 2010, 7 (4), pp.688-703. <10.1109/tcbb.2009.29>. <hal-01001026>
  • Christophe Godin, Pascal Ferraro. Quantifying the degree of self-nestedness of trees. Application to the structural analysis of plants. IEEE/ACM Transactions on Computational Biology and Bioinformatics, Institute of Electrical and Electronics Engineers, 2010, 7 (4), pp.688--703. <hal-00365885>
  • Jamie Wither, Frédéric Boudon, Marie-Paule Cani, Christophe Godin. Structure from silhouettes: a new paradigm for fast sketch-based design of trees. Computer Graphics Forum, Wiley, 2009, 28 (2), pp.541-550. <10.1111/j.1467-8659.2009.01394.x>. <hal-00366289>
  • Christophe Pradal, Frédéric Boudon, Christophe Nouguier, Jérôme Chopard, Christophe Godin. PlantGL: A Python-based geometric library for 3D plant modelling at different scales. Graphical Models, Elsevier, 2009, 71 (1), 1--21, posted-at = 2008-11-04 14:10:07. <10.1016/j.gmod.2008.10.001>. <hal-00850782>
  • Fabien Campillo, Christophe Godin, Alain Rapaport. Modéliser les plantes et leurs utilisations. LISA (Sophia-Antipolis), Inria, 2008, n.p. <hal-01019298>
  • Evelyne Costes, Colin Smith, Michael Renton, Yann Guédon, Premyslaw Prusinkiewicz, et al.. MAppleT: simulation of apple tree development using mixed stochastic and biomechanical models. Functional Plant Biology, CSIRO Publishing, 2008, 35 (10), pp.936-950. <hal-00831809>
  • Christophe Pradal, Samuel Dufour-Kowalski, Frédéric Boudon, Christian Fournier, Christophe Godin. OpenAlea: A visual programming and component-based software platform for plant modeling. Functional Plant Biology, CSIRO Publishing, 2008, 35 (10), pp.751-760. <10.1071/FP08084>. <hal-00831811>
  • Mikaël Lucas, Yann Guédon, Christian Jay-Allemand, Christophe Godin, Laurent Laplaze. An auxin transport-based model of root branching in Arabidopsis thaliana. PLoS ONE, Public Library of Science, 2008, 3 (11), <10.1371/journal.pone.0003673>. <hal-00831804>
  • David Da Silva, Frédéric Boudon, Christophe Godin, Hervé Sinoquet. Multiscale Framework for Modeling and Analyzing Light Interception by Trees. Multiscale Modeling and Simulation, SIAM, 2008, 7 (2), pp.910-933. <10.1137/08071394X>. <hal-00831810>
  • Mikaël Lucas, Christophe Godin, Christian Jay-Allemand, Laurent Laplaze. Auxin fluxes in the root apex co-regulate gravitropism and lateral root initiation. Journal of Experimental Botany, Oxford University Press (OUP), 2008, 59 (1), pp.55-66. <hal-00831806>
  • Szymon Stoma, M. Lucas, Jérôme Chopard, Marianne Schaedel, Jan Traas, et al.. Flux based transport enhancement as a plausible unifying mechanism for Auxin transport in meristem development. PLoS Computational Biology, Public Library of Science, 2008, 4 (10), pp.1000207. <10.1371/journal.pcbi.1000207>. <hal-00412857>
  • Frédéric Boudon, Christophe Godin, Christophe Pradal, Olivier Puech, Hervé Sinoquet. Estimating the fractal dimension of plants using the two-surface method: An analysis based on 3D-digitized tree foliage. Fractals, World Scientific Publishing, 2006, 14 (3), pp.149-163. <10.1142/S0218348X06003179>. <hal-00115450>
  • Pierre Barbier de Reuille, Isabelle Bohn-Courseau, Karen Ljung, Halima Morin, Nicola Carraro, et al.. Computer simulations reveal novel properties of the cell-cell signaling network at the shoot apex in /Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2006, 103 (5), p. 1627-1632. <10.1073/pnas.0510130103>. <hal-00023247>
  • C. Cilas, Avner Bar-Hen, C. Montagnon, Christophe Godin. Definition of Architectural Ideotypes for Good Yield Capacity in Coffea canephora. Annals of Botany, Oxford University Press (OUP), 2006, 97 (3), pp.405-411. <10.1093/aob/mcj053>. <hal-00018925>
  • M. Renton, Yann Guédon, Christophe Godin, Evelyne Costes. Similarities and gradients in growth unit branching patterns during ontogeny in "Fuji" apple trees: a stochastic approach. Journal of Experimental Botany, Oxford University Press (OUP), 2006, 57 (2), pp.3131-3143. <hal-00120198>
  • C. Cilas, Christophe Godin, B. Bertrand, H. Baillères. Genetic study on the physical properties of Coffea arabica L. wood. Trees - Structure and Function, Springer Verlag, 2006, 20 (5), pp.587-592. <10.1007/s00468-006-0073-3>. <hal-00120112>
  • Pierre Barbier de Reuille, Isabelle Bohn-Courseau, Christophe Godin, Jan Traas. La modélisation comme outils d'analyse pour la biologie du développement. médecine/sciences, EDP Sciences, 2006, 22 (10), pp.814-816. <10.1051/medsci/20062210814>. <hal-00120228>
  • Christophe Godin, Hervé Sinoquet, Evelyne Costes, Jan Traas. Des plantes virtuelles pour comprendre les plantes réelles. Pour la science, Paris : E. Belin, 2006. <hal-00830062>
  • Alain R. Thierry, François Képès, Patrick Amar, Georgia Barlovatz-Meimon, Gilles Bernot, et al.. Modelling of biological complex systems in the context of genomics. An account of a multidisciplinary thematic seminar held in Montpellier (France) in April 2005. Journal of Biological Physics and Chemistry, Basel, Switzerland : Collegium Basilea (Institute of Advanced Study) ; Tbilisi : Association of Modern Scientific Investigation (AMSI), 2006, 6, pp.103--107. <hal-00339610>
  • Alain Thierry, François Képès, Patrick Amar, Georgia Barlovatz-Meimon, Gilles Bernot, et al.. Modelling of complex biological systems in the context of genomics: an account of a multidisciplinary thematic seminar held in Montpellier (France) in April 2005. Journal of Biological Physics and Chemistry, Basel, Switzerland : Collegium Basilea (Institute of Advanced Study) ; Tbilisi : Association of Modern Scientific Investigation (AMSI), 2006, 6, pp.103-107. <hal-00830064>
  • Pascal Ferraro, Christophe Godin, Przemylaw Prusinkiewicz. Toward a quantification of self-similarity in plants. Fractals, World Scientific Publishing, 2005, 13, pp.91-109. <10.1142/S0218348X05002805>. <hal-00307402>
  • Christophe Godin, Hervé Sinoquet. Functional-Structural Plant modelling. New Phytologist, Wiley, 2005, 166 (3), pp.705-708. <10.1111/j.1469-8137.2005.01445.x>. <hal-00830073>
  • Pierre Barbier de Reuille, Isabelle Bohn-Courseau, Christophe Godin, Jan Trass. A protocol to analyse cellular dynamics during plant development. Plant Journal, Wiley, 2005, 44 (6), pp.1045-1053. <10.1111/j.1365-313X.2005.02576.x>. <hal-00016123>
  • Hervé Sinoquet, Gabriela Sonohat, Jessada Phattaralerphong, Christophe Godin. Foliage randomness and light interception in 3D digitized trees:an analysis of 3D discretization of the canopy. Plant, Cell and Environment, Wiley, 2005, 29, pp.1158-1170. <10.1111/j.1365-3040.2005.01353.x>. <hal-00830072>
  • Christophe Godin, Hervé Sinoquet, Evelyne Costes, Jan Traas. Modéliser le vivant : créer des plantes virtuelles pour comprendre, simuler, tester. Interstices, INRIA, 2005. <inria-00000530>
  • Pascal Ferraro, Christophe Godin. An edit distance between quotiented trees. Algorithmica, Springer Verlag, 2003, 36, pp.1-39. <hal-00307409>
  • Pascal Ferraro, Christophe Godin. Optimal mappings with minimun number of connected components in tree-to-tree comparison problems. Journal of Algorithms in Cognition, Informatics and Logic, Elsevier, 2003, 48, pp.385-406. <hal-00306620>
  • Evelyne Costes, Hervé Sinoquet, J.J. Kelner, Christophe Godin. Exploring within-tree architectural development of two apple tree cultivars over 6 years.. Annals of Botany, Oxford University Press (OUP), 2003, 91, pp.91-104. <10.1093/aob/mcg010>. <hal-00826993>
  • Frédéric Boudon, Premyslaw Prusinkiewicz, Pavol Federl, Christophe Godin, Radoslaw Karwowski. Interactive design of bonsai tree models. Computer Graphics Forum. Proceedings of Eurographics, Blackwell, 2003, 22 (3), pp.591-599. <10.1111/1467-8659.t01-2-00707>. <hal-00827461>
  • Victor Norris, Patrick Amar, Gilles Bernot, Jean-Louis Giavitto, Christophe Godin, et al.. Modelling and simulation of biological processes in the context of genomics. Journal of Biological Physics and Chemistry, Basel, Switzerland : Collegium Basilea (Institute of Advanced Study) ; Tbilisi : Association of Modern Scientific Investigation (AMSI), 2003, 3, pp.106-110. <hal-00827462>
  • Patrick Amar, Pascal Ballet, Georgia Barlovatz-Meimon, Arndt Benecke, Gilles Bernot, et al.. Hyperstructures, genome analysis and I-Cells. Acta Biotheoretica, Springer Verlag, 2002, 50 (4), pp.357-373. <10.1023/A:1022629004589>. <hal-00827467>
  • Christian Cilas, Christophe Godin, David Grenier, Christophe Montagnon, Henri Baillères. Variability in the rigidity of Coffea canephora Pierre stems determined by acoustic analysis. Trees-Structure and Function, Springer Verlag (Germany), 2002, 16 (1), pp.23-37. <10.1007/s00468-001-0140-8>. <hal-00827470>
  • Christophe Godin. Representing and encoding plant architecture: A review. Annals of Forest Science, Springer Verlag/EDP Sciences, 2000, 57 (5), pp.413-438. <10.1051/forest:2000132>. <hal-00883351>
  • Pascal Ferraro, Christophe Godin. A distance measure between plant architectures. Annals of Forest Science, Springer Verlag/EDP Sciences, 2000, 57 (5), pp.445-461. <10.1051/forest:2000134>. <hal-00883353>
  • Pascal Ferraro, Christophe Godin. A distance measure between plant architectures. Annals of Forest Science, Springer Verlag/EDP Sciences, 2000, 57 (5/6), pp.445-461. <hal-00827474>
  • Christophe Godin. Representing and encoding plant architecture: a review. Annals of Forest Science, Springer Verlag/EDP Sciences, 2000, 57 (5-6), pp.413-438. <10.1051/forest:2000132>. <hal-00827475>
  • Pascal Ferraro, Christophe Godin. A Distance Measure Between Plant Architecture. Annals of Forest Science, Springer Verlag/EDP Sciences, 2000, 57, pp.445-461. <10.1051/forest:2000134>. <hal-00277325>
  • Pascal Ferraro, Christophe Godin. A distance measure between plant architecture. Annals of Forest Science, Springer Verlag/EDP Sciences, 2000, 57, pp.445-461. <hal-00306621>
  • Christian Cilas, Christophe Montagnon, Benoit Bertrand, Christophe Godin. Wood elasticity of several Coffea canephora Pierre clones. A new trait to be included in selection schemes. Agronomie, EDP Sciences, 2000, 20 (4), pp.439-444. <10.1051/agro:2000140>. <hal-00827476>
  • Christian Cilas, Christophe Montagnon, Benoit Bertrand, Christophe Godin. Wood elasticity of several Coffea canephora Pierre clones. A new trait to be included in selection schemes. Agronomie, EDP Sciences, 2000, 20 (4), pp.439-444. <10.1051/agro:2000140>. <hal-00886051>
  • Christophe Godin, Yann Guédon, Evelyne Costes. Exploration of plant architecture databases with the AMAPmod software illustrated on an apple-tree hybrid family. Agronomie, EDP Sciences, 1999, 19 (3-4), pp.163-184. <10.1051/agro:19990301>. <hal-00827483>
  • Christophe Godin, Yann Guédon, Evelyne Costes. Exploration of a plant architecture database with the AMAPmod software illustrated on an apple tree hybrid family. Agronomie, EDP Sciences, 1999, 19 (3-4), pp.163-184. <hal-00885923>
  • Christophe Godin, Evelyne Costes, Hervé Sinoquet. A method for describing plant architecture which integrates topology and geometry. Annals of Botany, Oxford University Press (OUP), 1999, 84 (3), pp.343-357. <10.1006/anbo.1999.0923>. <hal-00827477>
  • Frédéric Danjon, Hervé Sinoquet, Christophe Godin, F. Colin, Michael Drexhage. Characterisation of structural tree root architecture using 3D digitising and AMAPmod software.. Plant and Soil, Springer Verlag, 1999, 211 (2), pp.241-258. <10.1023/A:1004680824612>. <hal-00827481>
  • Christophe Godin, Yves Caraglio. A multiscale model of plant topological structures. Journal of Theoretical Biology, Elsevier, 1998, 191 (1), pp.1-46. <10.1006/jtbi.1997.0561>. <hal-00827484>
  • Hervé Sinoquet, A. Adam, Pierre Rivet, Christophe Godin. Interactions between light and plant architecture in an agroforestry walnut tree. Agroforestry Forum, U.K Agroforestry Research Forum, 1998, 8 (2), pp.37-40. <hal-00827486>
  • Christophe Godin, Evelyne Costes, Yves Caraglio. Exploring plant topology structure with the AMAPmod software : an outline. Silva Fennica, Suomen Metsätieteellinen Seura ry, 1997, 31 (3), pp.355-366. <hal-00827489>
  • Hervé Sinoquet, Pierre Rivet, Christophe Godin. Assessment of the three-dimensional architecture of walnut trees using digitising. Silva Fennica, Suomen Metsätieteellinen Seura ry, 1997, 31 (3), pp.265-273. <hal-00827488>

Autre publication2 documents

  • Patrick Valduriez, Nicolas Arnaud, François Briand, Olivier Gascuel, Olivier Gimenez, et al.. Final Report of the ModSysC2020 Working Group - Data, Models and Theories for Complex Systems: new challenges and opportunities. 2012, pp.35. <lirmm-00749078>
  • Fabien Campillo, Christophe Godin. Modéliser les plantes et leurs utilisations. LISA (Lettre de l'INRIA Sophia Antipolis). 2008, n.p. <hal-00857816>

Rapport7 documents

  • Antoine Rousseau, Aurélie Darnaud, Brice Goglin, Céline Acharian, Christine Leininger, et al.. Médiation Scientifique : une facette de nos métiers de la recherche. [Interne] none. 2013, pp.34. <hal-00804915>
  • Christophe Godin, Pascal Ferraro. Quantifying the degree of self-nestedness of trees. Application to the structural analysis of plants. [Research Report] RR-6800, INRIA. 2009, pp.42. <inria-00353645>
  • Christophe Pradal, Frédéric Boudon, Christophe Nouguier, Jérôme Chopard, Christophe Godin. PlantGL : a Python-based geometric library for 3D plant modelling at different scales. [Research Report] RR-6367, INRIA. 2007. <inria-00191126v3>
  • Frédéric Boudon, Alexandre Meyer, Christophe Godin. Survey on Computer Representations of Trees for Realistic and Efficient Rendering. [Research Report] 2301, LIRIS UMR CNRS 5205. 2006. <hal-00830069>
  • Frédéric Boudon, Christophe Nouguier, Christophe Godin. GEOM Module manual: II Developer guide. [Technical Report] 2001. <hal-00827472>
  • Frédéric Boudon, Christophe Nouguier, Christophe Godin. GEOM Module manual: I User guide. [Technical Report] 2001. <hal-00827471>
  • Christophe Godin, Yann Guédon. AMAPmod v1.8. Introduction and reference manual. [Research Report] 1997. <hal-00827487>

HDR1 document

  • Christophe Godin. Introduction aux structures multi-échelles. Applications à la représentation des plantes.. Modélisation et simulation. Université de Montpellier 2, 2003. <tel-01424776>

Poster2 documents

  • Romain Azaïs, Jean-Baptiste Durand, Christophe Godin. Lossy compression of unordered rooted trees. DCC 2016 - Data Compression Conference , Mar 2016, Snowbird, Utah, United States. <10.1109/DCC.2016.73>. <hal-01394707>
  • Julien Diener, Philippe Nacry, Bertrand Muller, Anne Diévart, Yann Guédon, et al.. RSA extraction from 2D images for processing high-throughput data. CSHL: Automated Imaging & High-Throughput Phenotyping, Apr 2012, Cold Spring Harbor, United States. 2012. <hal-00915034>

Pré-publication, Document de travail2 documents

  • Romain Azaïs, Jean-Baptiste Durand, Christophe Godin. Approximation of trees by self-nested trees. 2016. <hal-01294013v2>
  • Romain Azaïs, Jean-Baptiste Durand, Christophe Godin. Lossy compression of unordered rooted trees. 2015. <hal-01236088>

Document associé à des manifestations scientifiques2 documents

  • Thomas Cokelaer, Christophe Pradal, Christophe Godin. Introduction to OpenAlea, a platform for plant modeling. 28th International Horticultural Congress, 2010, Lisbon, Portugal. 2010. <hal-00831779>
  • Christophe Pradal, Nicolas Donès, Christophe Godin, Pierre Reuille, Frédéric Boudon, et al.. ALEA: A software for integrating analysis and simulation tools for 3D architecture and ecophysiology. 4th International Workshop on Functional-Structural Plant Models, 2004, Montpellier, France. pp.406, 2004. <hal-00830075>

Direction d'ouvrage, Proceedings1 document

  • Christophe Godin, Jim Hanan, Winfried Kurth, André Lacointe, A. Takenaka, et al.. Proceedings of the 4th International Workshop on Functional-Structural Plant Models, Montpellier France. Godin, Christophe and Hanan, Jim and Kurth, Winfried and Lacointe, André and Takenaka, A. and Prusinkiewicz, Premyslaw and DeJong, Theodore M. and Beveridge, Christine and Andrieu, Bruno. France. UMR AMAP, pp.1-423, 2004. <hal-00830080>

Chapitre d'ouvrage3 documents

  • Christophe Godin, Eugenio Azpeitia, Etienne Farcot. An introduction to modelling flower primordium initiation. From Molecules to Living Organisms: An Interplay Between Biology and Physics, 102, 2015, Lecture Notes of the Les Houches School of Physics. <hal-01254880>
  • Christophe Godin, Evelyne Costes, Hervé Sinoquet. Plant architecture modelling - virtual plants, dynamic and complex systems. Turnbull, C. Plant architecture and its manipulation, Blackwell Publishing, pp.238-287, 2005, Annual Plant Reviews. <hal-00019850>
  • Christophe Godin, Yann Guédon, Evelyne Costes, Yves Caraglio. Measuring and analyzing plants with the AMAPmod software. Michalewicz, M.T. Plants to ecosystems - Advances in Computational Life Sciences, 2nd International Symposium on Computer Challenges in Life Science, CSIRO Australia, pp.53-84, 1997. <hal-00827490>