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Overview of LifeCLEF 2023: evaluation of AI models for the identification and prediction of birds, plants, snakes and fungi

 Alexis Joly , Christophe Botella , Lukáš Picek , Stefan Kahl , Hervé Goëau , et al.
CLEF 2023 - 14th International Conference of the CLEF Association, Sep 2023, Thessalokini, Greece. pp.416-439, ⟨10.1007/978-3-031-42448-9_27⟩
Communication dans un congrès hal-04322219v1
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Overview of LifeCLEF 2018: A Large-Scale Evaluation of Species Identification and Recommendation Algorithms in the Era of AI

 Alexis Joly , Hervé Goëau , Christophe Botella , Hervé Glotin , Pierre Bonnet , et al.
CLEF 2018 - 9th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2018, Avignon, France. pp.247-266, ⟨10.1007/978-3-319-98932-7_24⟩
Communication dans un congrès hal-01913231v1
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Overview of GeoLifeCLEF 2019: plant species prediction using environment and animal occurrences

 Christophe Botella , Maximilien Servajean , Pierre Bonnet , Alexis Joly
CLEF 2019 - Conference and Labs of the Evaluation Forum, Sep 2019, Lugano, Switzerland
Communication dans un congrès hal-02190170v1
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A new multi-species method to correct for sampling bias in presence only niche models, and its application to Pl@ntNet citizen science data in France

 Christophe Botella , Alexis Joly , Pierre Bonnet , François Munoz , Pascal Monestiez
ESA 2019 - Annual Meeting of the Ecological Society of America, Aug 2019, Louisville, United States
Communication dans un congrès hal-03261122v1
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Evaluation of Deep Species Distribution Models using Environment and Co-occurrences

 Benjamin Deneu , Maximilien Servajean , Christophe Botella , Alexis Joly
CLEF 2019 - 10th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2019, Lugano, Switzerland. pp.213-225, ⟨10.1007/978-3-030-28577-7_18⟩
Communication dans un congrès hal-02290310v1
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Species recommendation using intensity models and sampling bias correction (GeoLifeCLEF2019: Lof of Lof team)

 Pascal Monestiez , Christophe Botella
CLEF 2019: Conference and Labs of the Evaluation Forum, Sep 2019, Lugano, Switzerland. pp.1-8
Communication dans un congrès hal-02288944v1
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LifeCLEF 2019: Biodiversity Identification and Prediction Challenges

 Alexis Joly , Hervé Goëau , Christophe Botella , Stefan Kahl , Marion Poupard , et al.
ECIR 2019 - 41st European Conference on IR Research, Apr 2019, Cologne, Germany. pp.275-282, ⟨10.1007/978-3-030-15719-7_37⟩
Communication dans un congrès hal-02273257v1

The GeoLifeCLEF 2020 Dataset

 Elijah Cole , Benjamin Deneu , Titouan Lorieul , Maximilien Servajean , Christophe Botella , et al.
2020
Pré-publication, Document de travail hal-02989062v1
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Species distribution modeling based on the automated identification of citizen observations

 Christophe Botella , Alexis Joly , Pierre Bonnet , Pascal P. Monestiez , François Munoz
Applications in Plant Sciences, 2018, Green Digitization: Online Botanical Collections Data Answering Real‐World Questions, 6 (2), pp.1-11. ⟨10.1002/aps3.1029⟩
Article dans une revue hal-01739481v1
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Location-based species recommendation using co-occurrences and environment- GeoLifeCLEF 2018 challenge

 Benjamin Deneu , Maximilien Servajean , Christophe Botella , Alexis Joly
CLEF 2018 - Conference and Labs of the Evaluation Forum, Sep 2018, Avignon, France
Communication dans un congrès hal-01913241v1
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Statistical methods for modelling the spatial distribution of plant species from large masses of uncertain occurrences from citizen science programs

 Christophe Botella
Statistics [math.ST]. Université Montpellier, 2019. English. ⟨NNT : 2019MONTS135⟩
Thèse tel-02519161v3
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Synergizing Digital, Biological, and Participatory Sciences for Global Plant Species Identification: Enabling access to a worldwide identification service

 Pierre Bonnet , Antoine Affouard , Jean-Christophe Lombardo , Mathias Chouet , Hugo Gresse , et al.
Biodiversity Information Science and Standards, 2023, 7, pp.e112545. ⟨10.3897/biss.7.112545⟩
Article dans une revue hal-04430929v1
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An appraisal of graph embeddings for comparing trophic network architectures

 Christophe Botella , Stéphane Dray , Catherine Matias , Vincent Miele , Wilfried Thuiller
Methods in Ecology and Evolution, 2022, 13 (1), pp.203-216. ⟨10.1111/2041-210X.13738⟩
Article dans une revue hal-03191630v2
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Overview of GeoLifeCLEF 2023: Species Composition Prediction with High Spatial Resolution at Continental Scale Using Remote Sensing

 Christophe Botella , Benjamin Deneu , Diego Marcos , Maximilien Servajean , Théo Larcher , et al.
CLEF 2023 - Working Notes of the Conference and Labs of the Evaluation Forum, Sep 2023, Thessalokini, Greece. pp.1954-1971
Communication dans un congrès hal-04322255v1
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LifeCLEF 2020 Teaser: Biodiversity Identification and Prediction Challenges

 Alexis Joly , Hervé Goëau , Christophe Botella , Rafael Ruiz de Castaneda , Hervé Glotin , et al.
ECIR 2020 - 42nd European Conference on IR Research on Advances in Information Retrieval, Apr 2020, Lisbon, Portugal. pp.542-549, ⟨10.1007/978-3-030-45442-5_70⟩
Communication dans un congrès hal-02873670v1
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Life Science Workflow Services (LifeSWS): motivations and architecture

 Reza Akbarinia , Christophe Botella , Alexis Joly , Florent Masseglia , Marta Mattoso , et al.
Transactions on Large-Scale Data- and Knowledge-Centered Systems, 2023, 14280, pp.1-24. ⟨10.1007/978-3-662-68100-8_1⟩
Article dans une revue lirmm-04173545v1
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Overview of LifeCLEF 2019: Identification of Amazonian Plants, South & North American Birds, and Niche Prediction

 Alexis Joly , Hervé Goëau , Christophe Botella , Stefan Kahl , Maximilien Servajean , et al.
CLEF 2019 - 10th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2019, Lugano, Switzerland. pp.387-401, ⟨10.1007/978-3-030-28577-7_29⟩
Communication dans un congrès hal-02281455v1
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Overview of GeoLifeCLEF 2018: location-based species recommendation

 Christophe Botella , Pierre Bonnet , François Munoz , Pascal P. Monestiez , Alexis Joly
CLEF 2018 - Conference and Labs of the Evaluation Forum, Sep 2018, Avignon, France
Communication dans un congrès hal-01913238v1
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The GeoLifeCLEF 2023 Dataset to evaluate plant species distribution models at high spatial resolution across Europe

 Christophe Botella , Benjamin Deneu , Diego Marcos , Maximilien Servajean , Joaquim Estopinan , et al.
2023
Pré-publication, Document de travail hal-04152362v1
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Overview of LifeCLEF location-based species prediction task 2020 (GeoLifeCLEF)

 Benjamin Deneu , Titouan Lorieul , Elijah Cole , Maximilien Servajean , Christophe Botella , et al.
CLEF 2020 - Conference and Labs of the Evaluation Forum, Sep 2020, Thessaloniki, Greece
Communication dans un congrès hal-02989077v1
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Convolutional neural networks improve species distribution modelling by capturing the spatial structure of the environment

 Benjamin Deneu , Maximilien Servajean , Pierre Bonnet , Christophe Botella , François Munoz , et al.
PLoS Computational Biology, 2021, 17 (4), pp.e1008856. ⟨10.1371/journal.pcbi.1008856⟩
Article dans une revue hal-03220977v1
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Jointly estimating spatial sampling effort and habitat suitability for multiple species from opportunistic presence‐only data

 Christophe Botella , Alexis Joly , Pierre Bonnet , François Munoz , Pascal Monestiez
Methods in Ecology and Evolution, 2021, 12 (5), pp.933-945. ⟨10.1111/2041-210X.13565⟩
Article dans une revue hal-03150701v1
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A deep learning approach to Species Distribution Modelling

 Christophe Botella , Alexis Joly , Pierre Bonnet , Pascal Monestiez , François Munoz
Alexis Joly; Stefanos Vrochidis; Kostas Karatzas; Ari Karppinen; Pierre Bonnet. Multimedia Tools and Applications for Environmental & Biodiversity Informatics, Springer, pp.169-199, 2018, Multimedia Systems and Applications Series, 978-3-319-76444-3. ⟨10.1007/978-3-319-76445-0_10⟩
Chapitre d'ouvrage hal-01834227v1
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Bias in presence-only niche models related to sampling effort and species niches: Lessons for background point selection

 Christophe Botella , Alexis Joly , Pascal Monestiez , Pierre Bonnet , François Munoz
PLoS ONE, 2020, 15 (5), pp.e0232078. ⟨10.1371/journal.pone.0232078⟩
Article dans une revue hal-02639237v1
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Overview of LifeCLEF 2020: A System-Oriented Evaluation of Automated Species Identification and Species Distribution Prediction

 Alexis Joly , Hervé Goëau , Stefan Kahl , Benjamin Deneu , Willem-Pier Vellinga , et al.
CLEF 2020 - 11th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2020, Thessaloniki, Greece. pp.342-363, ⟨10.1007/978-3-030-58219-7_23⟩
Communication dans un congrès hal-02945382v1
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LifeCLEF 2023 teaser: Species Identification and Prediction Challenges

 Alexis Joly , Stefan Kahl , Lukáš Picek , Christophe Botella , Diego Marcos , et al.
ECIR 2023 - 45th European Conference on Information Retrieval, Jaap Kamps; Lorraine Goeuriot; Fabio Crestani; Maria Maistro; Hideo Joho; Brian Davis; Cathal Gurrin; Udo Kruschwitz; Annalina Caputo, Apr 2023, Dublin, Ireland. pp.568-576, ⟨10.1007/978-3-031-28241-6_65⟩
Communication dans un congrès hal-04204378v1
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