Christine Sinoquet
67
Documents
Publications
Prediction and Inference in a Partially Hidden Markov-switching Framework with Autoregression. Application to Machinery Health Diagnosis.33rd IEEE International Conference on Tools with Artificial Intelligence (ICTAI), IEEE-CS, Nov 2021, virtual event, United States
Communication dans un congrès
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Detection of gene-gene interactions: methodological comparison on real-world data and insights on synergy between methods.International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC2019, Feb 2019, Prague, Czech Republic. pp.30-42
Communication dans un congrès
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Enhanced ensemble approach to learn Markov blankets for feature subset selection in high-dimensional settings. Illustration with an application to mine genetic data.Cap2018 (French Conference on Machine Learning), Jun 2018, Rouen, France
Communication dans un congrès
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Enhancement of a stochastic Markov blanket framework with ant colony optimization, to uncover epistasis in genetic association studies.ESANN 2018 - 26th European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning, Apr 2018, Bruges, Belgium. pp.673-678
Communication dans un congrès
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Random forests with latent variables to foster feature selection in the context of highly correlated variables. Illustration with a bioinformatics application.17th International Symposium on Intelligent Data Analysis, IDA2018, Oct 2018, 's-Hertogenbosch, Netherlands. pp.290-302
Communication dans un congrès
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Optimisation par colonie de fourmis pour la sélection de variables par construction stochastique de couverture de Markov - Application pour la médecine de précision.19th edition of the annual congress of the French Society for Operation Research and Decision Assistance, ROADEF2018, Feb 2018, Lorient, France
Communication dans un congrès
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Random forest framework customized to handle highly correlated variables: an extensive experimental study applied to feature selection in genetic data.IEEE 5th International Conference on Data Science and Advanced Analytics, DSAA2018, Oct 2018, Turin, Italy. pp.217-226
Communication dans un congrès
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Combining latent tree modeling with a random forest-based approach, for genetic association studies26th European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning, ESANN2018, Apr 2018, Bruges, Belgium. pp.225-230
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Ant colony optimization for Markov blanket-based feature selection. Application for precision medicine4th International Conference on Machine Learning, Optimization, and Data Science, LOD2018, Sep 2018, Volterra, Tuscany, Italy. 12 p
Communication dans un congrès
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Impact du choix de la méthode de partitionnement pour les forêts d'arbres latentsSFC2015, P. Kuntz, Sep 2015, Nantes, France. pp.24-27
Communication dans un congrès
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Modeling genetical data with forests of latent trees for applications in association genetics at a large scale. Which clustering method should be chosen?International Conference on Bioinformatics Models, Methods and Algorithms, Bioinformatics2015, Nov 2014, Lisbon, Portugal. pp.12
Communication dans un congrès
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Modeling of genotype data with forests of latent trees to detect genetic causes of diseasesAdo2013 (Machine Learning and Omics Data), Dec 2013, Lille, France. 6 p
Communication dans un congrès
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Simulation of phenotypes under H1 in genome wide association studies and applications.Fourth edition of workshop Statistical Methods for Post Genomics Analysis, SMPGD2012, France, Lyon, january 26-27, Jan 2012, Lyon, France
Communication dans un congrès
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Forests of latent tree models for the detection of genetic associationsInternational Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2012), Feb 2012, Vilamoura, Portugal. pp.1-10, ⟨10.5220/0003703400050014⟩
Communication dans un congrès
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Waffect: a method to simulate case-control samples in genome-wide association studies.JOBIM, Jun 2011, Paris, France. 7 p
Communication dans un congrès
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Waffect : a method to simulate case-control samples in genome-wide association studies.43ème édition des journées de la Société Française de Statistique, May 2011, Gammarth, Tunisia
Communication dans un congrès
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Apprentissage de réseaux bayésiens hiérarchiques latents pour les études d'association pangénomiquesProc. JFRB 2010, 5th French-speaking meeting on Bayesian networks, Nantes, May 2010, Nantes, France. pp.11-12
Communication dans un congrès
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Réseaux bayésiens hiérarchiques avec variables latentes pour la modélisation des dépendances entre SNP: une approche pour les études d'association pangénomiquesProc. SFC 2010, XVIIth Join Meeting of the French Society of Classification, France, Saint-Denis de la Réunion, 9-11 june, Jun 2010, Saint-Denis de la Réunion, France. pp.25-29
Communication dans un congrès
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Learning Hierarchical Bayesian Networks for Genome-Wide Association StudiesCOMPSTAT, Nineteenth International Conference on Computational Statististics, Aug 2010, Paris, France. pp.549-556
Communication dans un congrès
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Hierarchical Bayesian networks applied to association geneticsMODGRAPH 2010 (Modèles graphiques probabilistes pour l'intégration de données hétérogènes et la découverte de modèles causaux en biologie), Journée satellite de JOBIM 2010, Sep 2010, Montpellier, France
Communication dans un congrès
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SNPShuttle: bi-directional scan of SNP arrays to gain accuracy in missing genotype inferenceProc. Seventh Asia-Pacific Bioinformatics Conference, APBC2009, ISBN 978-7-302-19048-6, Jan 2009, Beijing, China. pp.915-925
Communication dans un congrès
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Modélisation des dépendances locales entre SNP à l'aide d'un réseau bayésienProc. SFC'09, XVIth Join Meeting of the French Society of Classification, actes des 16èmes rencontres de la Société Francophone de Classification, Sep 2009, Grenoble, France. pp.169-172
Communication dans un congrès
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A Bayesian network approach to model local dependencies among SNPsMODGRAPH 2009 Probabilistic graphical models for integration of complex data and discovery of causal models in biology, satellite meeting of JOBIM 2009, Jun 2009, Nantes, France
Communication dans un congrès
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Extending the Hardness of RNA Secondary Structure Comparison1st International Symposium on Combinatorics, Algorithms, Probabilistic and Experimental Methodologies (ESCAPE 2007), Apr 2007, Hangzhou, China. pp.140-151
Communication dans un congrès
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A novel approach for structured consensus motif inference under specificity and quorum constraintsProc. Fourth Asia-Pacific Bioinformatics Conference, APBC2006, Advances in Bioinformatics and Computational Biology, ISBN 1-86094-623-2, Feb 2006, Taipei, Taiwan. pp.207-216
Communication dans un congrès
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A cooperative strategy dedicated to structured motif discovery in genomic dataProc. Fith ALIO-EURO Conference on Combinatorial Optimization, Oct 2005, Paris, France. pp.106-107
Communication dans un congrès
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When chance helps inferring a structured consensus motif from DNA sequences: study of the metaheuristics approach KaosProc. CompBioNets2005, Algorithms and Computational Methods for Biochemical and Evolutionary Networks, ISBN 1904987311, Dec 2005, Lyon, France. pp.107-132
Communication dans un congrès
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Révélation de motif consensus fonctionnel dans un génomeFRANCORO IV, International French-speaking Conference on Operational Research, Oct 2004, Fribourg, Switzerland. pp.89-90
Communication dans un congrès
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Maximal sub-triangulation as preprocessing phylogenetic dataInternational Conference Journées de l'Informatique Messine, Sep 2003, Metz, France
Communication dans un congrès
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Maximal sub-triangulation as preprocessing phylogenetic dataProc. Fourth International Conference on Knowledge Discovery and Discrete Mathematics, Sep 2003, Metz, France. pp.267-275
Communication dans un congrès
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Reverse translation of amino-acid sequences: a method guided by an n-gram modelProc. JOBIM 2000 : Journées Ouvertes pour la Biologie, l'Informatique et les Mathématiques Open workshop for Biology, Computer Science and Mathematics, May 2000, Montpellier, France. pp.343-350
Communication dans un congrès
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Interdépendances nappe-gravières en région AlsaceForum scientifique «bravo l'eau», 29 mars 1990, au Conseil Général du Haut-Rhin à Colmar, 1990, France. 8 p
Communication dans un congrès
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Probabilistic graphical models for genetics, genomics and postgenomicsKeith Mansfield. Oxford University Press, 480 p., 2014, 978-0-19-870902-2
Ouvrages
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Biomedical Engineering Systems and Technologies, 7th International Joint Conference, BIOSTEC2014, Extended Selected PapersSpringer, 2014, Communication in Computer and Information Science
Ouvrages
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Machine learning and combinatorial optimization to detect gene-gene interactions in genome-wide real data: looking through the prism of four methods and two protocolsBiomedical Engineering Systems and Technologies, 12th International Joint Conference, BIOSTEC2019, Czech Republic, Prague, 22-24 february, Extended Selected Papers, Communication in Computer and Information Science, A. Fred and H. Gamboa (eds.), Springer, 29 pages, inPress
Chapitre d'ouvrage
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Latent Forests to Model Genetical Data for the Purpose of Multilocus Genome-wide Association Studies. Which clustering should be chosen?Communication in Computer and Information Science, Springer, pp.17, 2015, BIOSTEC2015
Chapitre d'ouvrage
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Essentials to understand probabilistic graphical models: a tutorial about inference and learning.Probabilistic graphical models for genetics, genomics, and postgenomics, Oxford University Press, pp.30-82, 2014
Chapitre d'ouvrage
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Probabilistic graphical models for next-generation genomics and genetics.Oxford University Press. Probabilistic graphical models for genetics, genomics, and postgenomics, , 2014
Chapitre d'ouvrage
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Modeling linkage disequilibrium and performing association studies through probabilistic graphical models: a visiting tour of recent advances.Probabilistic graphical models for genetics, genomics, and postgenomics, Oxford University Press, pp.217-246, 2014
Chapitre d'ouvrage
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Probabilistic graphical modeling in systems biology: a framework for integrative approachesA. Prokop and B. Csukas (eds.). Systems Biology : integrative biology and simulation tools, Springer, pp.241-272, 2013, Systems Biology: integrative biology and simulation tools
Chapitre d'ouvrage
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Forests of latent tree models to decipher genotype-phenotype associationsJ. Gariel, J. Schier, S. Van Huffel, E. Conchon, C. Correia, A. Fred and H. Gamboa. Biomedical Engineering Systems and Technologies, Communication in Computer and Information Science 357, Springer Berlin Heidelberg, pp.113-134, 2013, 978-3-642-38255-0. ⟨10.1007/978-3-642-38256-7_8⟩
Chapitre d'ouvrage
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Approches par optimisation combinatoire et par apprentissage statistique en bioinformatique. Applications pour la fouille et la modélisation de données complexes en génomique et en génétique2014
Autre publication scientifique
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Waffect: a method to simulate case-control samples in genome-wide association studies2011
Autre publication scientifique
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Bayesian multi-locus pattern selection and computation through reversible jump MCMC2010
Autre publication scientifique
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GWAS-AS: assistance for a thorough evaluation of advanced algorithms dedicated to genome-wide association studies2010
Autre publication scientifique
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Forests of hierarchical latent models for association genetics2010
Autre publication scientifique
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Performance analysis of methods to infer missing genotypes[Research Report] 2008
Rapport
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Analyse syntaxique non déterministe utilisant un modèle de n-grams[Rapport de recherche] RR-3262, INRIA. 1997
Rapport
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