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CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers
Christine Pourcel
,
Marie Touchon
,
Nicolas Villeriot
,
Jean-Philippe Vernadet
,
David Couvin
Article dans une revue
hal-02990278v1
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New Insights into CRISPR Arrays
Christine Pourcel
Article dans une revue
hal-03128777v1
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Complete Genome Sequences of Five Acinetobacter baumannii Phages from Abidjan, Côte d'Ivoire
Christiane Essoh
,
Jean-Philippe Vernadet
,
Gilles Vergnaud
,
Adama Coulibaly
,
Adèle Kakou-N'Douba
Article dans une revue
hal-02170278v1
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Revised interpretation of the Hain Lifescience GenoType MTBC to differentiate $Mycobacterium\ canettii$ and members of the $Mycobacterium\ tuberculosis$ Complex
Chloe Loiseau
,
Daniela Brites
,
Irmgard Moser
,
Francesc Coll
,
Christine Pourcel
Article dans une revue
hal-02173134v1
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Clinical features of Mycobacterium canettii infection: a retrospective study of 20 cases among French soldiers and relatives
Anaïs Briquet
,
Rithy Vong
,
Jean-Baptiste Roseau
,
Emilie Javelle
,
Nicolas Cazes
Article dans une revue
hal-02169565v1
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Investigation of $Pseudomonas\ aeruginosa$ strain PcyII-10 variants resisting infection by N4-like phage Ab09 in search for genes involved in phage adsorption
Libera Latino
,
Cédric Midoux
,
Gilles Vergnaud
,
Christine Pourcel
Article dans une revue
hal-02173138v1
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Impact of FiuA outer-membrane receptor polymorphism on the resistance of Pseudomonas aeruginosa towards peptidoglycan lipid II-targeting PaeM pyocins
Libera Latino
,
Delphine Patin
,
Dimitri Chérier
,
Thierry Touzé
,
Christine Pourcel
Article dans une revue
hal-02173140v1
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Associations between Mycobacterium tuberculosis Beijing genotype and drug resistance to four first-line drugs: a survey in China
Haican Liu
,
Yuanyuan Zhang
,
Zhiguang Liu
,
Jinghua Liu
,
Yolande Hauck
Article dans une revue
hal-02180796v1
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Recovery and Characterization of Bacteria Resisting Infection by Lytic Bacteriophage
Libera Latino
,
Christine Pourcel
Article dans une revue
hal-02180795v1
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Genotypic Expansion Within the Population Structure of Classical Brucella Species Revealed by MLVA16 Typing of 1404 Brucella Isolates From Different Animal and Geographic Origins, 1974-2006
Gilles Vergnaud
,
Yolande Hauck
,
David Christiany
,
Brendan Daoud
,
Christine Pourcel
Article dans une revue
hal-02184813v1
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CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
David Couvin
,
Aude Bernheim
,
Claire Toffano-Nioche
,
Marie Touchon
,
Juraj Michalik
Article dans une revue
pasteur-02098389v1
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Transposition behavior revealed by high-resolution description of $Pseudomonas\ Aeruginosa$ saltovirus integration sites
Gilles Vergnaud
,
Cédric Midoux
,
Yann Blouin
,
Maria Bourkaltseva
,
Victor Krylov
Article dans une revue
hal-02184815v1
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A carrier state is established in Pseudomonas aeruginosa by phage LeviOr01, a newly isolated ssRNA levivirus
Christine Pourcel
,
Cédric Midoux
,
Gilles Vergnaud
,
Libera Latino
Article dans une revue
hal-01879191v1
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Correction to: CRISPR-like sequences in Helicobacter pylori and application in genotyping
Khotchawan Bangpanwimon
,
Jaksin Sottisuporn
,
Pimonsri Mittraparp-Arthorn
,
Warattaya Ueaphatthanaphanich
,
Attapon Rattanasupar
Article dans une revue
hal-02187754v1
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Large Preferred Region for Packaging of Bacterial DNA by phiC725A, a Novel Pseudomonas aeruginosa F116-Like Bacteriophage
Christine Pourcel
,
Cédric Midoux
,
Yolande Hauck
,
Gilles Vergnaud
,
Libera Latino
Article dans une revue
hal-01879155v1
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Clinical relevance of FASII bypass in Staphylococcus aureus
Karine Gloux
,
Mélanie Guillemet
,
Charles Soler
,
Claire Morvan
,
David Halpern
Article dans une revue
hal-02195054v1
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CRISPR-like sequences in Helicobacter pylori and application in genotyping
Khotchawan Bangpanwimon
,
Jaksin Sottisuporn
,
Pimonsri Mittraparp-Arthorn
,
Warattaya Ueaphatthanaphanich
,
Attapon Rattanasupar
Article dans une revue
hal-02187755v1
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Correction: Comparison of French and Worldwide Bacillus anthracis Strains Favors a Recent, Post-Columbian Origin of the Predominant North-American Clade
Gilles Vergnaud
,
Guillaume Girault
,
Simon Thierry
,
Christine Pourcel
,
Nora Madani
Article dans une revue
hal-01879193v1
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Comparison of French and Worldwide Bacillus anthracis Strains Favors a Recent, Post-Columbian Origin of the Predominant North-American Clade
Gilles Vergnaud
,
Guillaume Girault
,
Simon Thierry
,
Christine Pourcel
,
Nora Madani
Article dans une revue
hal-01278435v1
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A new genotyping scheme based on MLVA for inter-laboratory surveillance of Streptococcus pyogenes.
Monica Imperi
,
Valentina Pittiglio
,
Giuseppe d'Avenio
,
Giovanni Gherardi
,
Andrea Ciammaruconi
Article dans une revue
hal-01441903v1
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Pseudolysogeny and sequential mutations build multiresistance to virulent bacteriophages in Pseudomonas aeruginosa
Libera Latino
,
Cédric Midoux
,
Yolande Hauck
,
Gilles Vergnaud
,
Christine Pourcel
Article dans une revue
hal-01280758v1
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Complete Genome Sequences of Pseudomonas aeruginosa Phages vB_PaeP_PcyII-10_P3P1 and vB_PaeM_PcyII-10_PII10A.
Christine Pourcel
,
Cédric Midoux
,
Libera Latino
,
Marie-Agnès Petit
,
Gilles Vergnaud
Article dans une revue
hal-01439325v1
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Complete Genome Sequence of PM105, a New Pseudomonas aeruginosa B3-Like Transposable Phage.
Christine Pourcel
,
Cédric Midoux
,
Maria Bourkaltseva
,
Elena Pleteneva
,
Victor Krylov
Article dans une revue
hal-01443828v1
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Development of a Multiple-Locus Variable-Number Tandem-Repeat Typing Scheme for Genetic Fingerprinting of Burkholderia cenocepacia and Application to Nationwide Epidemiological Analysis
Christine Segonds
,
Michelle Thouverez
,
Antoine Barthe
,
Nadège Bossuet-Greif
,
Lenka Tisseyre
Article dans une revue
hal-01110749v1
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A novel multiple locus variable number of tandem repeat (VNTR) analysis (MLVA) method for Propionibacterium acnes
Yolande Hauck
,
Charles Soler
,
Patrick Gérôme
,
Rithy Vong
,
Christine Macnab
Article dans une revue
hal-01188389v1
|
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Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d'Ivoire.
Christiane Essoh
,
Libera Latino
,
Cédric Midoux
,
Yann Blouin
,
Guillaume Loukou
Article dans une revue
hal-01188392v1
|
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Development of a Multiple Loci Variable Number of Tandem Repeats Analysis (MLVA) to Unravel the Intra-Pathovar Structure of Pseudomonas syringae pv. actinidiae Populations Worldwide
Serena Ciarroni
,
Lorenzo Gallipoli
,
Maria C Taratufolo
,
Margi I Butler
,
Russell T M Poulter
Article dans une revue
hal-01214203v1
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Yersinia pseudotuberculosis ST42 (O:1) Strain Misidentified as Yersinia pestis by Mass Spectrometry Analysis.
Patrick Gérôme
,
Philippe Le Flèche
,
Yann Blouin
,
Holger C Scholz
,
François M Thibault
Article dans une revue
hal-01009200v1
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Staphylococcus aureus from 152 cases of bovine, ovine and caprine mastitis investigated by Multiple-locus variable number of tandem repeat analysis (MLVA)
Dominique Bergonier
,
Daniel Sobral
,
Andrea T Fessler
,
Eric Jacquet
,
Florence Gilbert
Article dans une revue
hal-01123402v1
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Progenitor "Mycobacterium canettii" clone responsible for lymph node tuberculosis epidemic, Djibouti.
Yann Blouin
,
Géraldine Cazajous
,
Céline Dehan
,
Charles Soler
,
Rithy Vong
Emerging Infectious Diseases, 2014, 20 (1), pp.21-8
Article dans une revue
hal-00948497v1
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Optimized Multilocus Variable-Number Tandem-Repeat Analysis Assay and Its Complementarity with Pulsed-Field Gel Electrophoresis and Multilocus Sequence Typing for Listeria monocytogenes Clone Identification and Surveillance
Viviane Chenal-Francisque
,
Laure Diancourt
,
Thomas Cantinelli
,
Virginie Passet
,
Coralie Tran-Hykes
Article dans une revue
pasteur-02869993v1
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Draft Genome Sequences of Five Yersinia pseudotuberculosis ST19 Isolates and One Isolate Variant.
Mikhail E Platonov
,
Yann Blouin
,
Vera V Evseeva
,
Maxim V Afanas'Ev
,
Christine Pourcel
Article dans une revue
hal-00813384v1
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Diversity of β-lactam resistance mechanisms in cystic fibrosis isolates of Pseudomonas aeruginosa: a French multicentre study.
Catherine Llanes
,
Christine Pourcel
,
Charlotte Richardot
,
Patrick Plésiat
,
Gwennaele Fichant
Article dans une revue
hal-01061585v1
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The Susceptibility of Pseudomonas aeruginosa Strains from Cystic Fibrosis Patients to Bacteriophages.
Christiane Essoh
,
Yann Blouin
,
Guillaume Loukou
,
Arsher Cablanmian
,
Serge Lathro
Article dans une revue
hal-00822766v1
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High Throughput Multiple Locus Variable Number of Tandem Repeat Analysis (MLVA) of Staphylococcus aureus from Human, Animal and Food Sources.
Daniel Sobral
,
Stefan Schwarz
,
Dominique Bergonier
,
Anne Brisabois
,
Andrea T Fessler
Article dans une revue
hal-00695986v1
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Significance of the Identification in the Horn of Africa of an Exceptionally Deep Branching Mycobacterium tuberculosis Clade.
Yann Blouin
,
Yolande Hauck
,
Charles Soler
,
Michel Fabre
,
Rithy Vong
Article dans une revue
hal-00772379v1
|
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Diversity of Acinetobacter baumannii in Four French Military Hospitals, as Assessed by Multiple Locus Variable Number of Tandem Repeats Analysis.
Yolande Hauck
,
Charles Soler
,
Patrick Jault
,
Audrey Mérens
,
Patrick Gérome
Article dans une revue
hal-00734019v1
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Rapid Identification of International Multidrug-Resistant Pseudomonas aeruginosa Clones by Multiple-Locus Variable Number of Tandem Repeats Analysis and Investigation of Their Susceptibility to Lytic Bacteriophages.
Jérôme Larché
,
Flavie Pouillot
,
Christiane Essoh
,
Balázs Libisch
,
Monica Straut
Article dans une revue
hal-00752317v1
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A Multi Locus Variable Number of Tandem Repeat Analysis (MLVA) scheme for Streptococcus agalactiae genotyping.
Eve Haguenoer
,
Gaelle Baty
,
Christine Pourcel
,
Marie-Frédérique Lartigue
,
Anne-Sophie Domelier
Article dans une revue
inserm-00617493v1
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Identification of Variable-Number Tandem-Repeat (VNTR) Sequences in Acinetobacter baumannii and Interlaboratory Validation of an Optimized Multiple-Locus VNTR Analysis Typing Scheme.
Christine Pourcel
,
Fabrizia Minandri
,
Yolande Hauck
,
Silvia d'Arezzo
,
Francesco Imperi
Article dans une revue
hal-00574235v1
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Investigation on Mycobacterium tuberculosis Diversity in China and the Origin of the Beijing Clade.
Kanglin Wan
,
Jinghua Liu
,
Yolande Hauck
,
Yuanyuan Zhang
,
Jie Liu
Article dans une revue
hal-00657918v1
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Investigation of the population structure of Legionella pneumophila by analysis of tandem repeat copy number and internal sequence variation.
Paolo Visca
,
Silvia d'Arezzo
,
Françoise Ramisse
,
Yevgeniy Gelfand
,
Gary Benson
Article dans une revue
hal-00633000v1
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Longitudinal survey of Staphylococcus aureus in cystic fibrosis patients using a multiple-locus variable-number of tandem-repeats analysis method.
Hoang Vu-Thien
,
Katia Hormigos
,
Gaëlle Corbineau
,
Brigitte Fauroux
,
Harriet Corvol
Article dans une revue
hal-00506420v1
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Molecular characteristics of "Mycobacterium canettii" the smooth Mycobacterium tuberculosis bacilli.
Michel Fabre
,
Yolande Hauck
,
Charles Soler
,
Jean-Louis Koeck
,
Jakko van Ingen
Article dans une revue
hal-00534312v1
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Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs) for the Genotyping of Bacterial Pathogens.
Ibtissem Grissa
,
Gilles Vergnaud
,
Christine Pourcel
Article dans une revue
hal-00397745v1
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Improved MLVA assay for Staphylococcus aureus providing a highly informative genotyping technique together with strong phylogenetic value.
Christine Pourcel
,
Katia Hormigos
,
Lucie Onteniente
,
Olga Sakwinska
,
Ruud H Deurenberg
Article dans une revue
hal-00414260v1
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Multiple locus variable number of tandem repeats analysis.
Gilles Vergnaud
,
Christine Pourcel
Article dans une revue
hal-00397743v1
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|
Genotyping and phylogenetic analysis of Yersinia pestis by MLVA: insights into the worldwide expansion of Central Asia plague foci.
Yanjun Li
,
Yujun Cui
,
Yolande Hauck
,
Mikhail E Platonov
,
Erhei Dai
Article dans une revue
hal-00399011v1
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Genotyping of strains by Multilocus VNTR Analysis
Karine Laroucau
,
Fabien Vorimore
,
Claire Bertin
,
Khalil Yousef Mohamad
,
Simon Thierry
Article dans une revue
hal-00485537v1
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Comparison of two commercial assays for the characterization of rpoB mutations in Mycobacterium tuberculosis and description of new mutations conferring weak resistance to rifampicin.
Yolande Hauck
,
Michel Fabre
,
Gilles Vergnaud
,
Charles Soler
,
Christine Pourcel
Article dans une revue
hal-00397748v1
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|
High resolution typing of Chlamydophila psittaci by multilocus VNTR analysis (MLVA).
Karine Laroucau
,
Simon Thierry
,
Fabien Vorimore
,
Kinndle Blanco
,
Erhard Kaleta
Article dans une revue
hal-00241850v1
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CRISPRcompar: a website to compare clustered regularly interspaced short palindromic repeats.
Ibtissem Grissa
,
Gilles Vergnaud
,
Christine Pourcel
Article dans une revue
hal-00297231v1
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Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeats.
Yujun Cui
,
Yanjun Li
,
Olivier Gorgé
,
Mikhail E Platonov
,
Yanfeng Yan
Article dans une revue
hal-00297130v1
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The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats.
Ibtissem Grissa
,
Gilles Vergnaud
,
Christine Pourcel
Article dans une revue
hal-00194456v1
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On-line resources for bacterial micro-evolution studies using MLVA or CRISPR typing.
Ibtissem Grissa
,
Patrick Bouchon
,
Christine Pourcel
,
Gilles Vergnaud
Article dans une revue
hal-00195167v1
|
|
Multiple-locus variable-number tandem-repeat analysis for longitudinal survey of sources of Pseudomonas aeruginosa infection in cystic fibrosis patients.
Hoang Vu-Thien
,
Gaëlle Corbineau
,
Katia Hormigos
,
Brigitte Fauroux
,
Harriet Corvol
Article dans une revue
hal-00192548v1
|
|
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.
Ibtissem Grissa
,
Gilles Vergnaud
,
Christine Pourcel
Article dans une revue
hal-00194414v1
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|
Identification of variable-number tandem-repeat (VNTR) sequences in Legionella pneumophila and development of an optimized multiple-locus VNTR analysis typing scheme.
Christine Pourcel
,
Paolo Visca
,
Baharak Afshar
,
Silvia d'Arezzo
,
Gilles Vergnaud
Article dans une revue
hal-00195326v1
|
|
Analysis of the three Yersinia pestis CRISPR loci provides new tools for phylogenetic studies and possibly for the investigation of ancient DNA.
Gilles Vergnaud
,
Yanjun Li
,
Olivier Gorgé
,
Yujun Cui
,
Yajun Song
Advances in Experimental Medicine and Biology, 2007, 603, pp.327-38
Article dans une revue
hal-00195235v1
|
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High genetic diversity revealed by variable-number tandem repeat genotyping and analysis of hsp65 gene polymorphism in a large collection of "Mycobacterium canettii" strains indicates that the M. tuberculosis complex is a recently emerged clone of "M. canettii".
Michel Fabre
,
Jean-Louis Koeck
,
Philippe Le Flèche
,
Fabrice Simon
,
Vincent Hervé
Article dans une revue
hal-01158318v1
|