Publications

Kurt A Sailor, George Agoranos, Sergio López-Manzaneda, Satoru Tada, Beatrix Gillet-Legrand, et al.. Hematopoietic stem cell transplantation chemotherapy causes microglia senescence and peripheral macrophage engraftment in the brain. Nature Medicine, Nature Publishing Group, 2022, ⟨10.1038/s41591-022-01691-9⟩. ⟨pasteur-03588683⟩

François Laurent, Hippolyte Verdier, Maxime Duval, Alexander Serov, Christian L Vestergaard, et al.. TRamWAy: mapping physical properties of individual biomolecule random motion in large-scale single-particle tracking experiments. Bioinformatics, Oxford University Press (OUP), 2022, 38 (11), pp.3149-3150. ⟨10.1093/bioinformatics/btac291⟩. ⟨pasteur-03695448⟩

Hippolyte Verdier, Maxime Duval, François Laurent, Alhassan Cassé, Christian L. Vestergaard, et al.. Learning physical properties of anomalous random walks using graph neural networks. Journal of Physics A: Mathematical and Theoretical, IOP Publishing, 2021, 54, pp.234001. ⟨pasteur-03150190v2⟩

Alexander S Serov, François Laurent, Charlotte Floderer, Karen Perronet, Cyril Favard, et al.. Statistical Tests for Force Inference in Heterogeneous Environments. Scientific Reports, Nature Publishing Group, 2020, 10 (1), pp.3783. ⟨10.1038/s41598-020-60220-1⟩. ⟨pasteur-02865729⟩

François Laurent, Charlotte Floderer, Cyril Favard, Delphine Muriaux, Jean-Baptiste Masson, et al.. Mapping spatio-temporal dynamics of single biomolecules in living cells. Physical Biology, Institute of Physics: Hybrid Open Access, 2020, 17 (1), pp.015003. ⟨10.1088/1478-3975/ab5167⟩. ⟨pasteur-02408362⟩

Christian L. Vestergaard, Paul C Blainey, Henrik Flyvbjerg. Single-particle trajectories reveal two-state diffusion-kinetics of hOGG1 proteins on DNA. Nucleic Acids Research, Oxford University Press, 2018, pp.gky004. ⟨10.1093/nar/gky004⟩. ⟨hal-01690314⟩

Christian L. Vestergaard. Optimizing experimental parameters for tracking of diffusing particles. Physical Review E , American Physical Society (APS), 2016, 94 (2), pp.022401. ⟨10.1103/PhysRevE.94.022401⟩. ⟨hal-01144950v2⟩

Christian L. Vestergaard, Eugenio Valdano, Mathieu Génois, Chiara Poletto, Vittoria Colizza, et al.. Impact of spatially constrained sampling of temporal contact networks on the evaluation of the epidemic risk . European Journal of Applied Mathematics, Cambridge University Press (CUP), 2016, 27 (6), pp.941-957. ⟨10.1017/S0956792516000309⟩. ⟨hal-01342800⟩

Christian L. Vestergaard, Morten Bo Mikkelsen, Walter Reisner, Anders Kristensen, Henrik Flyvbjerg. Transition state theory demonstrated at the micron scale with out-of-equilibrium transport in a confined environment. Nature Communications, Nature Publishing Group, 2016, 7, pp.10227. ⟨10.1038/ncomms10227⟩. ⟨hal-01257781⟩

Livio Bioglio, Mathieu Génois, Christian L. Vestergaard, Chiara Poletto, Alain Barrat, et al.. Recalibrating disease parameters for increasing realism in modeling epidemics in closed settings. BMC Infectious Diseases, BioMed Central, 2016, 16 (1), pp.676. ⟨10.1186/s12879-016-2003-3⟩. ⟨inserm-01396695⟩

Mathieu Génois, Christian L. Vestergaard, Alain Barrat. Évaluer le risque épidémique à partir de données lacunaires. médecine/sciences, EDP Sciences, 2016, 32 (5), pp.506. ⟨10.1051/medsci/20163205019⟩. ⟨hal-01435397⟩

Jongmin Sung, Suman Nag, Kim I. Mortensen, Christian L. Vestergaard, Shirley Sutton, et al.. Harmonic force spectroscopy measures load-dependent kinetics of individual human b-cardiac myosin molecules. Nature Communications, Nature Publishing Group, 2015, 6, pp.7931. ⟨10.1038/ncomms8931⟩. ⟨hal-01190174⟩

Mathieu Génois, Christian L. Vestergaard, Ciro Cattuto, Alain Barrat. Compensating for population sampling in simulations of epidemic spread on temporal contact networks. Nature Communications, Nature Publishing Group, 2015, 6, pp.8860. ⟨hal-01131855⟩

Christian L. Vestergaard, Jonas N. Pedersen, Kim I. Mortensen, Henrik Flyvbjerg. Estimation of motility parameters from trajectory data: A condensate of our recent results. The European Physical Journal. Special Topics, EDP Sciences, 2015, 224 (7), pp.1151-1168. ⟨10.1140/epjst/e2015-02452-5⟩. ⟨hal-01212510⟩

Christian L. Vestergaard, Mathieu Génois. Temporal Gillespie algorithm: Fast simulation of contagion processes on time-varying networks. PLoS Computational Biology, Public Library of Science, 2015, 11 (10), pp.e1004579. ⟨10.1371/journal.pcbi.1004579⟩. ⟨hal-01140134v2⟩

Mathieu Génois, Christian L. Vestergaard, Julie Fournet, André Panisson, Isabelle Bonmarin, et al.. Data on face-to-face contacts in an office building suggests a low-cost vaccination strategy based on community linkers. Network Science, Cambridge Journals, 2015, 3 (3), pp.326-347. ⟨10.1017/nws.2015.10⟩. ⟨hal-01113431⟩

Christian L. Vestergaard, Mathieu Génois, Alain Barrat. How memory generates heterogeneous dynamics in temporal networks. Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, American Physical Society, 2014, 90, pp.042805. ⟨10.1103/PhysRevE.90.042805⟩. ⟨hal-01061650⟩

Laetitia Gauvin, Mathieu Génois, Marton Karsai, Mikko Kivelä, Taro Takaguchi, et al.. Randomized reference models for temporal networks. 2021. ⟨hal-01817633v4⟩