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Network-Guided Biomarker Discovery
Chloé-Agathe Azencott
Chapitre d'ouvrage
hal-01427118v1
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A systematic analysis of gene-gene interaction in multiple sclerosis
Lotfi Slim
,
Clément Chatelain
,
Hélène de Foucauld
,
Chloé-Agathe Azencott
Article dans une revue
hal-03122122v1
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Nonlinear post-selection inference for genome-wide association studies
Lotfi Slim
,
Clément Chatelain
,
Chloé-Agathe Azencott
Communication dans un congrès
hal-03122125v1
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Where Do We Stand in Regularization for Life Science Studies?
Veronica Tozzo
,
Chloé-Agathe Azencott
,
Samuele Fiorini
,
Emanuele Fava
,
Andrea Trucco
,
et al.
Article dans une revue
hal-03367708v1
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Multitask group Lasso for Genome Wide association Studies in diverse populations
Chloé-Agathe Azencott
,
Asma Nouira
Pacific Symposium on Biocomputing, Jan 2022, Kohala Coast, Hawaii, United States. pp.163-174
Communication dans un congrès
hal-03510963v1
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Drug Target Identification with Machine Learning: How to Choose Negative Examples
Matthieu Najm
,
Chloé-Agathe Azencott
,
Benoit Playe
,
Véronique Stoven
Article dans une revue
hal-03359024v1
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Advancing Drug-Target Interactions Prediction: Leveraging a Large-Scale Dataset with a Rapid and Robust Chemogenomic Algorithm.
Gwenn Guichaoua
,
Philippe Pinel
,
Brice Hoffmann
,
Chloé-Agathe Azencott
,
Veronique Stoven
2024
Pré-publication, Document de travail
hal-04495209v1
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kernelPSI: a Post-Selection Inference Framework for Nonlinear Variable Selection
Lotfi Slim
,
Clement Chatelain
,
Chloé-Agathe Azencott
,
Jean-Philippe Vert
36th International Conference on Machine Learning (ICML 2019), Jun 2019, Long Beach, CA, United States
Communication dans un congrès
hal-02441304v1
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Efficient multi-task chemogenomics for drug specificity prediction
Benoit Playe
,
Chloé-Agathe Azencott
,
Véronique Stoven
Article dans une revue
hal-01984828v1
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A new hybrid record linkage process to make epidemiological databases interoperable: application to the GEMO and GENEPSO studies involving BRCA1 and BRCA2 mutation carriers
Yue Jiao
,
Fabienne Lesueur
,
Chloé-Agathe Azencott
,
Maïté Laurent
,
Noura Mebirouk
,
et al.
Article dans une revue
inserm-03313811v1
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A network-guided protocol to discover susceptibility genes in genome-wide association studies using stability selection
Héctor Climente-González
,
Chloé-Agathe Azencott
,
Makoto Yamada
Article dans une revue
hal-04019421v1
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Machine learning and genomics: precision medicine versus patient privacy
Chloé-Agathe Azencott
Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 2018, 376 (2128), pp.20170350
Article dans une revue
hal-01984830v1
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Dynamic Risk Prediction of 30-Day Mortality in Patients With Advanced Lung Cancer: Comparing Five Machine Learning Approaches
Charles Vesteghem
,
Weronika Szejniuk
,
Rasmus Brøndum
,
Ursula Falkmer
,
Chloé-Agathe Azencott
,
et al.
Article dans une revue
hal-03901659v1
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Machine learning tools for biomarker discovery
Chloé-Agathe Azencott
Machine Learning [stat.ML]. Sorbonne Université UPMC, 2020
HDR
tel-02354924v2
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Interpretable network-guided epistasis detection
Diane Duroux
,
Héctor Climente-González
,
Chloé-Agathe Azencott
,
Kristel van Steen
Article dans une revue
hal-03114245v1
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Block HSIC Lasso: model-free biomarker detection for ultra-high dimensional data
Héctor Climente-González
,
Chloé-Agathe Azencott
,
Samuel Kaski
,
Makoto Yamada
Article dans une revue
hal-02072349v1
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Multitask feature selection with task descriptors
Victor Bellon
,
Véronique Stoven
,
Chloé-Agathe Azencott
Pacific Symposium on Biocomputing, Jan 2016, Hawai, United States. pp.261-272
Communication dans un congrès
hal-01246697v1
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Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis.
S Sieberts
,
Fan Zhu
,
Javier García-García
,
Eli Stahl
,
Abhishek Pratap
,
et al.
Article dans une revue
hal-01420921v1
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The Evaluation of Tools Used to Predict the Impact of Missense Variants Is Hindered by Two Types of Circularity
Dominik G. Grimm
,
Chloé-Agathe Azencott
,
Fabian Aicheler
,
Udo Gieraths
,
Daniel G. Macarthur
,
et al.
Article dans une revue
hal-01246688v1
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Assessing Random Forest self-reproducibility for optimal short biomarker signature discovery
Christophe Poulet
,
Ahmed Debit
,
Claire Josse
,
Guy Jerusalem
,
Chloé-Agathe Azencott
,
et al.
2023
Pré-publication, Document de travail
hal-04188150v1
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Disparities in accessibility to oncology care centers in France
Eric Daoud
,
Anne-Sophie Hamy-Petit
,
Elise Dumas
,
Lidia Delrieu
,
Beatriz Grandal Rejo
,
et al.
2022
Pré-publication, Document de travail
hal-03511050v1
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Non-invasive multi-cancer diagnosis using DNA hypomethylation of LINE-1 retrotransposons
Marc Michel
,
Maryam Heidary
,
Anissa Mechri
,
Kévin Da Silva
,
Marine Gorse
,
et al.
2024
Pré-publication, Document de travail
hal-04453898v1
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Detection of genes with differential expression dispersion unravels the role of autophagy in cancer progression
Christophe Le Priol
,
Chloé-Agathe Azencott
,
Xavier Gidrol
Article dans une revue
hal-03901624v1
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Prediction of human population responses to toxic compounds by a collaborative competition.
Federica Eduati
,
Lara M Mangravite
,
Tao Wang
,
Hao Tang
,
J Christopher Bare
,
et al.
Article dans une revue
hal-01428019v1
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The French Early Breast Cancer Cohort (FRESH): A Resource for Breast Cancer Research and Evaluations of Oncology Practices Based on the French National Healthcare System Database (SNDS)
Elise Dumas
,
Lucie Laot
,
Florence Coussy
,
Beatriz Grandal Rejo
,
Eric Daoud
,
et al.
Article dans une revue
hal-03901737v1
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EDEN : An Event DEtection Network for the annotation of Breast Cancer recurrences in administrative claims data
Elise Dumas
,
Anne-Sophie Hamy
,
Sophie Houzard
,
Eva Hernandez
,
Aullène Toussaint
,
et al.
2022
Pré-publication, Document de travail
hal-03903457v1
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Biological networks and GWAS: comparing and combining network methods to understand the genetics of familial breast cancer susceptibility in the GENESIS study
Héctor Climente-González
,
Christine Lonjou
,
Fabienne Lesueur
,
Dominique Stoppa-Lyonnet
,
Nadine Andrieu
,
et al.
Article dans une revue
hal-03114234v1
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martini: an R package for genome-wide association studies using SNP networks
Chloé-Agathe Azencott
,
Héctor Climente-González
2021
Pré-publication, Document de travail
hal-03122108v1
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pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods
Abdelkader Behdenna
,
Maximilien Colange
,
Julien Haziza
,
Aryo Gema
,
Guillaume Appé
,
et al.
Article dans une revue
hal-03114226v1
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The inconvenience of data of convenience: computational research beyond post-mortem analyses
Chloé-Agathe Azencott
,
Tero Aittokallio
,
Sushmita Roy
,
Ankit Agrawal
,
Emmanuel Barillot
,
et al.
Article dans une revue
hal-01679028v1
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