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Clément Frainay

25

Documents

Identifiants chercheurs

cfrainay
ResearcherId : B-8636-2019
IdRef : 233332944
0000-0003-4313-2786
VIAF : 6210154983552167860003
Google Scholar : https://scholar.google.com/citations?user=2ONnD1cAAAAJ&hl=fr
ResearcherId : http://www.researcherid.com/rid/B-8636-2019

Présentation

Publications

	Suggesting disease associations for overlooked metabolites using literature from metabolic neighbors Maxime Delmas , Olivier Filangi , Christophe Duperier , Nils Paulhe , Florence Vinson GigaScience, 2022, 12, pp.giad065. ⟨10.1093/gigascience/giad065⟩ Article dans une revue hal-04223426v1
	Avoiding the Misuse of Pathway Analysis Tools in Environmental Metabolomics Cecilia Wieder , Jacob Bundy , Clément Frainay , Nathalie Poupin , Pablo Rodríguez-Mier Environmental Science and Technology, inPress, ⟨10.1021/acs.est.2c05588⟩ Article dans une revue hal-03799270v1
	Networks and Graphs Discovery in Metabolomics Data Analysis and Interpretation Adam Amara , Clément Frainay , Fabien Jourdan , Thomas Naake , Steffen Neumann Frontiers in Molecular Biosciences, 2022, 9, ⟨10.3389/fmolb.2022.841373⟩ Article dans une revue hal-03636716v1
	Atopic dermatitis or eczema? Consequences of ambiguity in disease name for biomedical literature mining Clément Frainay , Yoann Pitarch , Sarah Filippi , Marina Evangelou , Adnan Custovic Clinical and Experimental Allergy, 2021, 51 (9), pp.1185-1194. ⟨10.1111/cea.13981⟩ Article dans une revue hal-03311466v1
	FORUM: building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases Maxime Delmas , Olivier Filangi , Nils Paulhe , Florence Vinson , Christophe Duperier Bioinformatics, 2021, 37 (21), pp.3896-3904. ⟨10.1093/bioinformatics/btab627⟩ Article dans une revue hal-03361495v1
	Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis Cecilia Wieder , Clément Frainay , Nathalie Poupin , Pablo Rodríguez-Mier , Florence Vinson PLoS Computational Biology, 2021, 17 (9), ⟨10.1371/journal.pcbi.1009105⟩ Article dans une revue hal-03344682v1
	Large-Scale Modeling Approach Reveals Functional Metabolic Shifts during Hepatic Differentiation Nathalie Poupin , Anne Corlu , Nicolas J. Cabaton , Hélène Dubois-Pot-Schneider , Cécile Canlet Journal of Proteome Research, 2019, 18 (1), pp.204-216. ⟨10.1021/acs.jproteome.8b00524⟩ Article dans une revue hal-01937261v1
	MetaboRank: network-based recommendation system to interpret and enrich metabolomics results Clément Frainay , Sandrine Aros , Maxime Chazalviel , Thomas Garcia , Florence Vinson Bioinformatics, 2019, 35 (2), pp.274-283. ⟨10.1093/bioinformatics/bty577⟩ Article dans une revue hal-02627792v1
	Integrated transcriptomics and metabolomics reveal signatures of lipid metabolism dysregulation in HepaRG liver cells exposed to PCB 126 Robin Mesnage , Martina Biserni , Sucharitha Balu , Clément Frainay , Nathalie Poupin Archives of Toxicology, 2018, 92 (8), pp.2533-2547. ⟨10.1007/s00204-018-2235-7⟩ Article dans une revue hal-02621552v1
	MetExploreViz: web component for interactive metabolic network visualization Maxime Chazalviel , Clément Frainay , Nathalie Poupin , Florence Vinson , Benjamin Merlet Bioinformatics, 2018, 34 (2), pp.312-313. ⟨10.1093/bioinformatics/btx588⟩ Article dans une revue hal-02621786v1
	Classification of pediatric asthma: from phenotype discovery to clinical practice Ceyda Oksel , Sadia Haider , Sara Fontanella , Clément Frainay , Adnan Custovic Frontiers in Pediatrics, 2018, 6, ⟨10.3389/fped.2018.00258⟩ Article dans une revue hal-02626193v1
	Mind the gap: mapping mass spectral databases in genome-scale metabolic networks reveals poorly covered Areas Clément Frainay , Emma L. Schymanski , Steffen Neumann , Benjamin Merlet , Reza Mohammadi Salek Metabolites, 2018, 8 (3), ⟨10.3390/metabo8030051⟩ Article dans une revue hal-02627086v1
	MetExplore: collaborative edition and exploration of metabolic networks Ludovic Cottret , Clément Frainay , Maxime Chazalviel , Floréal Cabanettes , Yoann Gloaguen Nucleic Acids Research, 2018, 46 (W1), 8 p. ⟨10.1093/nar/gky301⟩ Article dans une revue hal-01886470v1
	Targeted versus untargeted omics — the CAFSA story Maria del Mar Amador , Benoit Colsch , Foudil Lamari , Claude Jardel , Farid Ichou Journal of Inherited Metabolic Disease, 2018, 41 (3), pp.1-10. ⟨10.1007/s10545-017-0134-3⟩ Article dans une revue hal-01777969v1
	Machine learning to identify pairwise interactions between specific IgE antibodies and their association with asthma: A cross-sectional analysis within a population-based birth cohort Sara Fontanella , Clément Frainay , Clare S. Murray , Angela Simpson , Adnan Custovic PLoS Medicine, 2018, 15 (11), 22 p. ⟨10.1371/journal.pmed.1002691⟩ Article dans une revue hal-02626228v1
	Computational methods to identify metabolic sub-networks based on metabolomic profiles Clément Frainay , Fabien Jourdan Briefings in Bioinformatics, 2017, 18 (1), pp.43-56. ⟨10.1093/bib/bbv115⟩ Article dans une revue hal-01608721v1
	A computational solution to automatically map metabolite libraries in the context of genome scale metabolic networks Benjamin Merlet , Nils Paulhe , Florence Vinson , Clément Frainay , Maxime Chazalviel Frontiers in Molecular Biosciences, 2016, 3, ⟨10.3389/fmolb.2016.00002⟩ Article dans une revue hal-02631089v1
	Hypoxia induces VEGF-C expression in metastatic tumor cells via a HIF-1α-independent translation-mediated mechanism Florent Morfoisse , Anna Kuchnio , Clément Frainay , Anne Gomez-Brouchet , Marie-Bernadette Delisle Cell Reports, 2014, 6 (1), pp.155-167. ⟨10.1016/j.celrep.2013.12.011⟩ Article dans une revue hal-02631811v1

	Plant genome-scale metabolic networks Léo Gerlin , Clément Frainay , Fabien Jourdan , Caroline Baroukh , Sylvain Prigent Science Direct. Plant Metabolomics in full swing, 98, 2021, Advances in Botanical Research, ⟨10.1016/bs.abr.2020.09.021⟩ Chapitre d'ouvrage hal-03149497v1
	Genome-scale metabolic networks Clément Frainay , Fabien Jourdan Metabolomics: Practical Guide to Design and Analysis, 1ère édition, Chapman and Hall, 290 p., 2019, 9781315370583. ⟨10.1201/9781315370583-8⟩ Chapitre d'ouvrage hal-02786295v1

	Suggesting disease associations for overlooked metabolites using literature from metabolic neighbours M. Delmas , O. Filangi , C. Duperier , N. Paulhe , F. Vinson 2023 Pré-publication, Document de travail hal-04188519v1
	New genome scale network modeling and mining workflow for detecting metabolic changes induced by exposure to chemicals Louison Fresnais , Olivier Perin , Anne Riu , Romain Grall , Alban Ott 2023 Pré-publication, Document de travail hal-04188513v1
	Pathway analysis in metabolomics: pitfalls and best practice for the use of over-representation analysis Cecilia Wieder , Clément Frainay , Nathalie Poupin , Pablo Rodríguez-Mier , Florence Vinson 2021 Pré-publication, Document de travail hal-03240376v1
	FORUM: Building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases Maxime Delmas , Olivier Filangi , Nils Paulhe , Florence Vinson , Christophe Duperier 2021 Pré-publication, Document de travail hal-03318295v1

	Système de recommandation basé sur les réseaux pour l'interprétation de résultats de métabolomique Clément Frainay Médecine humaine et pathologie. Université Paul Sabatier - Toulouse III, 2017. Français. ⟨NNT : 2017TOU30297⟩ Thèse tel-01988413v1