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Clément Frainay

12
Documents
Identifiants chercheurs

Présentation

I'm a French computational biologist working on system biology and biological networks. I'm primarily interested in the study of metabolism, and I'm currently working at the [INRAE's Toxalim lab](https://www6.toulouse.inrae.fr/toxalim_eng/) on the impact of food contaminant exposure on this system. My research interests focus on solutions to overcome the information overload faced when reasoning on such large scale, leveraging network science, information filtering, information visualisation and knowledge modelling. See my page on Scholia: <https://scholia.toolforge.org/author/Q57243195>

Publications

fabien-jourdan
"florence-vinson"
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Avoiding the Misuse of Pathway Analysis Tools in Environmental Metabolomics

Cecilia Wieder , Jacob Bundy , Clément Frainay , Nathalie Poupin , Pablo Rodríguez-Mier
Environmental Science and Technology, inPress, ⟨10.1021/acs.est.2c05588⟩
Article dans une revue hal-03799270v1
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Suggesting disease associations for overlooked metabolites using literature from metabolic neighbors

Maxime Delmas , Olivier Filangi , Christophe Duperier , Nils Paulhe , Florence Vinson
GigaScience, 2022, 12, pp.giad065. ⟨10.1093/gigascience/giad065⟩
Article dans une revue hal-04223426v1
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Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis

Cecilia Wieder , Clément Frainay , Nathalie Poupin , Pablo Rodríguez-Mier , Florence Vinson
PLoS Computational Biology, 2021, 17 (9), ⟨10.1371/journal.pcbi.1009105⟩
Article dans une revue hal-03344682v1
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FORUM: building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases

Maxime Delmas , Olivier Filangi , Nils Paulhe , Florence Vinson , Christophe Duperier
Bioinformatics, 2021, 37 (21), pp.3896-3904. ⟨10.1093/bioinformatics/btab627⟩
Article dans une revue hal-03361495v1
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Large-Scale Modeling Approach Reveals Functional Metabolic Shifts during Hepatic Differentiation

Nathalie Poupin , Anne Corlu , Nicolas J. Cabaton , Hélène Dubois-Pot-Schneider , Cécile Canlet
Journal of Proteome Research, 2019, 18 (1), pp.204-216. ⟨10.1021/acs.jproteome.8b00524⟩
Article dans une revue hal-01937261v1
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MetaboRank: network-based recommendation system to interpret and enrich metabolomics results

Clément Frainay , Sandrine Aros , Maxime Chazalviel , Thomas Garcia , Florence Vinson
Bioinformatics, 2019, 35 (2), pp.274-283. ⟨10.1093/bioinformatics/bty577⟩
Article dans une revue hal-02627792v1
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MetExploreViz: web component for interactive metabolic network visualization

Maxime Chazalviel , Clément Frainay , Nathalie Poupin , Florence Vinson , Benjamin Merlet
Bioinformatics, 2018, 34 (2), pp.312-313. ⟨10.1093/bioinformatics/btx588⟩
Article dans une revue hal-02621786v1
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MetExplore: collaborative edition and exploration of metabolic networks

Ludovic Cottret , Clément Frainay , Maxime Chazalviel , Floréal Cabanettes , Yoann Gloaguen
Nucleic Acids Research, 2018, 46 (W1), 8 p. ⟨10.1093/nar/gky301⟩
Article dans une revue hal-01886470v1
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A computational solution to automatically map metabolite libraries in the context of genome scale metabolic networks

Benjamin Merlet , Nils Paulhe , Florence Vinson , Clément Frainay , Maxime Chazalviel
Frontiers in Molecular Biosciences, 2016, 3, ⟨10.3389/fmolb.2016.00002⟩
Article dans une revue hal-02631089v1