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11

Publications


2017   

Journal articles9 documents

  • Katharina Huber, Leo van Iersel, Vincent Moulton, Celine Scornavacca, Taoyang Wu. Reconstructing Phylogenetic Level-1 Networks from Nondense Binet and Trinet Sets. Algorithmica, Springer Verlag, 2017, 77 (1), pp.173-200. ⟨10.1007/s00453-015-0069-8⟩. ⟨hal-02154892⟩
  • Wandrille Duchemin, Yoann Anselmetti, Murray Patterson, Yann Ponty, Sèverine Bérard, et al.. DeCoSTAR: Reconstructing the ancestral organization of genes or genomes using reconciled phylogenies. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2017, 9 (5), pp.1312-1319. ⟨10.1093/gbe/evx069⟩. ⟨hal-01503766v2⟩
  • Julia Matsieva, Steven Kelk, Celine Scornavacca, Chris Whidden, Dan Gusfield. A Resolution of the Static Formulation Question for the Problem of Computing the History Bound. IEEE/ACM Transactions on Computational Biology and Bioinformatics, Institute of Electrical and Electronics Engineers, 2017, 14 (2), pp.404-417. ⟨10.1109/TCBB.2016.2527645⟩. ⟨hal-02154874⟩
  • Magnus Bordewich, Celine Scornavacca, Nihan Tokac, Mathias Weller. On the fixed parameter tractability of agreement-based phylogenetic distances. Journal of Mathematical Biology, Springer Verlag (Germany), 2017, 74 (1-2), pp.239-257. ⟨10.1007/s00285-016-1023-3⟩. ⟨lirmm-01348420⟩
  • Yao-Ban Chan, Vincent Ranwez, Celine Scornavacca. Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations. Journal of Theoretical Biology, Elsevier, 2017, 432, pp.1-13. ⟨10.1016/j.jtbi.2017.08.008⟩. ⟨hal-02154862⟩
  • Celine Scornavacca, Joan Carles Pons Mayol, Gabriel Cardona. Fast algorithm for the reconciliation of gene trees and LGT networks. Journal of Theoretical Biology, Elsevier, 2017, 418, pp.129-137. ⟨10.1016/j.jtbi.2017.01.024⟩. ⟨hal-02154890⟩
  • Matija Brozovic, Christelle Dantec, Justine Dardaillon, Delphine Dauga, Emmanuel Faure, et al.. ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets. Nucleic Acids Research, Oxford University Press, 2017, ⟨10.1093/nar/gkx1108⟩. ⟨hal-01636650⟩
  • Philippe Gambette, Leo van Iersel, Mark Jones, Manuel Lafond, Fabio Pardi, et al.. Rearrangement Moves on Rooted Phylogenetic Networks. PLoS Computational Biology, Public Library of Science, 2017, 13 (8), pp.e1005611. ⟨10.1371/journal.pcbi.1005611⟩. ⟨hal-01572624v2⟩
  • Edwin Jacox, Mathias Weller, Eric Tannier, Celine Scornavacca. Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses. Bioinformatics, Oxford University Press (OUP), 2017, 33 (7), pp.980-987. ⟨10.1093/bioinformatics/btw778⟩. ⟨hal-01526643⟩

Conference papers1 document

  • Cédric Chauve, Mark Jones, Manuel Lafond, Celine Scornavacca, Mathias Weller. Constructing a Consensus Phylogeny from a Leaf-Removal Distance (Extended Abstract). SPIRE, 2017, Palermo, Italy. pp.129-143. ⟨hal-02155266⟩

Other publications1 document

  • Cédric Chauve, Akbar Rafiey, Adrian Davin, Celine Scornavacca, Philippe Veber, et al.. MaxTiC: Fast Ranking Of A Phylogenetic Tree By Maximum Time Consistency With Lateral Gene Transfers. 2017, ⟨10.1101/127548⟩. ⟨hal-01532738v3⟩