Plateforme de séquençage à heut débit – Institute for Integrative Biology of the Cell (I2BC)
Gif-sur-Yvette (France) from December 2019 to present.
IR CNRS, Head of bioinformatics at I2BC's Sequencing Core Facility.
Bioinformatics and Computational Systems Biology of Cancer – Institut Curie
Paris (France) from May 2019 to November 2019.
Supervisors : Emmanuel Barillot, Andrei Zinovyev.
Post-doctoral fellow.
Computational Systems Biology Group – Institut de Biologie de l'Ecole Normale Supérieure
Paris (France) from July 2014 to April 2019.
Supervisors : Denis Thieffry, Morgane Thomas-Chollier.
Senior bioinformatics engineer (Ingénieur d'Etudes, CDD), and also PhD student (ED515 Complexité du vivant) from January 2016 to April 2019.
Projects:
Thesis defence: “Modélisation des processus inhibiteurs des cellules T dans la réponse anti-tumorale” (June 5th 2019).
Teaching: reproducibility of ChIp-seq analyses (NU Singapore), logical modelling (Workshop ECCB16), proteomics (L3 level, ENS).
Other: collaborative activities inside the Consortium for Logical Models and Tools (CoLoMoTo).
Protein Analysis Facility – University of Lausanne
Lausanne (Switzerland) from November 2009 to June 2014.
Supervisor : Manfredo Quadroni
Embedded bioinformatician for the proteomics core facility, including in-house tools development, analysis of proteomics data (R), maintenance of a LIM System as well as dedicated computers and servers (Mascot, MaxQuant, Proteome Discoverer).
Teaching: proteomics (course organised by the facility), proteogenomics (ProteomeXchange consortium, University of Bern-Fribourg).
Vital-IT Group – Swiss Institute of Bioinformatics
Lausanne (Switzerland) from December 2010 to June 2014.
Supervisor : Ioannis Xenarios
Bioinformatician. Participation into miscellaneous server installation/administration (ExPASy, Tranche, World-2DPage).
Supervision of other bioinformaticians in collaborative projects between different groups.
Proteome Informatics Group – Swiss Institute of Bioinformatics
Geneva (Switzerland) from November 2002 to November 2010.
Supervisors : Ron D. Appel, Frédérique Lisacek.
Bioinformatician. Worked on different projects initiated at the Proteome Informatics group (including SwissPIT, Popitam, Aldente) or in collaboration with the GeneBio company (Phenyx), the Biomedical Proteomics Research Group (pICarver, MALDIPepQuant), or the Swiss-Prot group (ExPASy).
Supervision of Master students (M2). Teaching assistant for Perl practical classes.
Helix Group – Institut National de Recherche en Informatique et en Automatique
Grenoble (France) from October 2000 to September 2002.
Supervisors : Hidde de Jong, François Rechenmann
Ingénieur associé. Participation to the development of Genetic Network Analyzer (GNA), a software for genetic regulatory networks description and simulation using a qualitative approach (piecewise-linear differential equations).
DESS “Informatique appliquée à la Biologie” (equivalent to a Masters degree, in Computer science applied to biology) at Université de Versailles Saint-Quentin-en-Yvelines (France).
University year 1999-2000. Mention Très bien.
High throughput data analysis
Modelling of regulatory networks
Other expertise