BROCHIER-ARMANET Céline

Monique Aouad, Jean-Pierre Flandrois, Frédéric Jauffrit, Manolo Gouy, Simonetta Gribaldo, et al.. A divide-and-conquer phylogenomic approach based on character supermatrices resolves early steps in the evolution of the Archaea. BMC Ecology and Evolution, BMC, 2022, 22 (1), pp.1-12. ⟨10.1186/s12862-021-01952-0⟩. ⟨hal-03514913⟩

Djivan Prentout, Natasa Stajner, Andreja Cerenak, Theo Tricou, Celine Brochier-Armanet, et al.. Plant genera Cannabis and Humulus share the same pair of well-differentiated sex chromosomes. New Phytologist, Wiley, 2021, 231 (4), pp.1599-1611. ⟨10.1111/nph.17456⟩. ⟨hal-03254304⟩

Michel Lecocq, Mathieu Groussin, Manolo Gouy, Celine Brochier-Armanet. The Molecular Determinants of Thermoadaptation: Methanococcales as a Case Study. Molecular Biology and Evolution, Oxford University Press (OUP), 2021, 38 (5), pp.1761-1776. ⟨10.1093/molbev/msaa312⟩. ⟨hal-03118165⟩

Jan Felix, Claire Siebert, Juila Ducassou, Jérôme Nigou, Pierre Garcia, et al.. Structural and functional analysis of the Francisella lysine decarboxylase as a key actor in oxidative stress resistance. Scientific Reports, Nature Publishing Group, 2021, 11 (1), pp.972. ⟨10.1038/s41598-020-79611-5⟩. ⟨hal-03118173⟩

Irene da Cruz, Celine Brochier-Armanet, Ricardo Benavente. The TERB1-TERB2-MAJIN complex of mouse meiotic telomeres dates back to the common ancestor of metazoans. BMC Evolutionary Biology, BioMed Central, 2020, 20 (1), ⟨10.1186/s12862-020-01612-9⟩. ⟨hal-03118158⟩

Celine Brochier-Armanet. Hepatitis B virus preS2Δ38–55 variants: A newly identified risk factor for hepatocellular carcinoma. JHEP Reports Innovation in Hepatology, Elsevier, 2020, 2 (5), pp.100144. ⟨10.1016/j.jhepr.2020.100144⟩. ⟨hal-03118169⟩

Nicole Hugouvieux‐cotte‐pattat, Celine Brochier-Armanet, Jean-Pierre Flandrois, Sylvie Reverchon. Dickeya poaceiphila sp. nov., a plant-pathogenic bacterium isolated from sugar cane (Saccharum officinarum). International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2020, 70 (8), pp.4508-4514. ⟨10.1099/ijsem.0.004306⟩. ⟨hal-03103453⟩

Simonetta Gribaldo, Celine Brochier-Armanet. Evolutionary relationships between Archaea and eukaryotes. Nature Ecology & Evolution, Nature, 2020, 4, pp.20-21. ⟨10.1038/s41559-019-1073-1⟩. ⟨pasteur-02445585⟩

Claire Siebert, Helena Lindgren, Sabrina Ferré, Corinne Villers, Sandrine Boisset, et al.. Francisella tularensis: FupA mutation contributes tofluoroquinolone resistance by increasing vesicle secretion and biofilm formation. Emerging microbes & infections, Earliest : Springer-Nature ; Latest : Taylor & Francis, 2019, 8 (1), pp.808-822. ⟨10.1080/22221751.2019.1615848⟩. ⟨hal-03019231⟩

Eaazhisai Kandiah, Diego Carriel, Pierre Simon Garcia, Jan Felix, Manuel Banzhaf, et al.. Structure, Function, and Evolution of the Pseudomonas aeruginosa Lysine Decarboxylase LdcA. Structure, Elsevier (Cell Press), 2019, ⟨10.1016/j.str.2019.10.003⟩. ⟨hal-02345384⟩

Alexandre Duprey, Najwa Taïb, Simon Leonard, Tiffany Garin, Jean-Pierre Flandrois, et al.. The phytopathogenic nature of Dickeya aquatica 174/2 and the dynamic early evolution of Dickeya pathogenicity. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2019, 21 (8), pp.2809-2835. ⟨10.1111/1462-2920.14627⟩. ⟨hal-02099020⟩

Jean-Pierre Flandrois, Céline Brochier-Armanet, Jérôme Briolay, Danis Abrouk, Guillaume Schwob, et al.. Taxonomic assignment of uncultured prokaryotes with long range PCR targeting the spectinomycin operon. Research in Microbiology, Elsevier, 2019, 170 (6-7), pp.280-287. ⟨10.1016/j.resmic.2019.06.005⟩. ⟨hal-02327832⟩

Lorine Bethencourt, Hasna Boubakri, Najwa Taïb, Philippe Normand, J. Armengaud, et al.. Comparative genomics and proteogenomics highlight key molecular players involved in Frankia sporulation. Research in Microbiology, Elsevier, 2019, 170 (4-5), pp.202-213. ⟨10.1016/j.resmic.2019.04.002⟩. ⟨hal-02309396⟩

Pierre Simon Garcia, Frédéric Jauffrit, Christophe Grangeasse, Céline Brochier-Armanet. GeneSpy, a user-friendly and flexible genomic context visualizer. Bioinformatics, Oxford University Press (OUP), 2019, 35 (2), pp.329-331. ⟨10.1093/bioinformatics/bty459⟩. ⟨hal-02388605⟩

Romain Pardoux, Anouchka Fiévet, Cíntia Carreira, Céline Brochier-Armanet, Odile Valette, et al.. The bacterial MrpORP is a novel Mrp/NBP35 protein involved in iron-sulfur biogenesis. Scientific Reports, Nature Publishing Group, 2019, 9 (1), pp.360-373. ⟨10.1038/s41598-018-37021-8⟩. ⟨hal-02186929⟩

L. Faivre, Clothilde Esteve, L. Francescatto, P. L. Tan, A. Bourchany, et al.. Description Osteo-Oto-Hepato-Enteric (O2HE) syndrome, a new recessive autosomal syndrome secondary to loss of function mutations in the UNC45A gene. European Journal of Human Genetics, Nature Publishing Group, 2019, 27 (1), pp.795-796. ⟨hal-02461437⟩

Monique Aouad, Guillaume Borrel, Céline Brochier-Armanet, Simonetta Gribaldo. Evolutionary placement of Methanonatronarchaeia. Nature Microbiology, Nature Publishing Group, 2019, ⟨10.1038/s41564-019-0359-z⟩. ⟨pasteur-02059654⟩

L. Zucchini, C. Mercy, Ps. Garcia, C. Cluzel, V. Gueguen-Chaignon, et al.. PASTA repeats of the protein kinase StkP interconnect cell constriction and separation of Streptococcus pneumoniae. Nature Microbiology, Nature Publishing Group, 2018, 3 (2), pp.197--209. ⟨hal-01887855⟩

Monique Aouad, Najwa Taïb, Anne Oudart, Michel Lecocq, Manolo Gouy, et al.. Extreme halophilic archaea derive from two distinct methanogen Class II lineages. Molecular Phylogenetics and Evolution, Elsevier, 2018, 127, pp.46-54. ⟨10.1016/j.ympev.2018.04.011⟩. ⟨hal-01799910⟩

Khaled Fadhlaoui, Wagdi Ben Hania, Fabrice Armougom, Manon Joseph, Marie-Laure Fardeau, et al.. Obligate sugar oxidation in Mesotoga spp., phylum Thermotogae , in the presence of either elemental sulfur or hydrogenotrophic sulfate-reducers as electron acceptor. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2018, 20 (1), pp.281-292. ⟨10.1111/1462-2920.13995⟩. ⟨hal-01976008⟩

Clothilde Esteve, Ludmila Francescatto, Perciliz Tan, Aurélie Bourchany, Cécile de Leusse, et al.. Loss-of-Function Mutations in UNC45A Cause a Syndrome Associating Cholestasis, Diarrhea, Impaired Hearing, and Bone Fragility. American Journal of Human Genetics, Elsevier (Cell Press), 2018, 102 (3), pp.364 - 374. ⟨10.1016/j.ajhg.2018.01.009⟩. ⟨hal-01721495⟩

Diego Carriel, Pierre Simon Garcia, Florence Castelli, Patricia Lamourette, François Fenaille, et al.. A novel subfamily of bacterial AAT-fold basic amino acid decarboxylases and functional characterization of its first representative: Pseudomonas aeruginosa LdcA. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2018, 10 (11), pp.3058-3075. ⟨10.1093/gbe/evy228⟩. ⟨hal-01987296⟩

H. Philippon, A. Souvane, Céline Brochier-Armanet, G. Perriere. IsoSel: Protein Isoform Selector for phylogenetic reconstructions. PLoS ONE, Public Library of Science, 2017, 12, pp.e0174250. ⟨10.1371/journal.pone.0174250⟩. ⟨hal-01943795⟩

J. Timm, C. Brochier-Armanet, J. Pérard, B. Zambelli, S. Ollagnier de Choudens, et al.. The CO dehydrogenase accessory protein CooT is a novel nickel-binding protein.. Metallomics, Royal Society of Chemistry, 2017, 9 (5), pp.575-583. ⟨10.1039/c7mt00063d⟩. ⟨hal-01655185⟩

Panagiotis Adam, Guillaume Borrel, Céline Brochier-Armanet, Simonetta Gribaldo. The growing tree of Archaea: new perspectives on their diversity, evolution and ecology. ISME Journal, Nature Publishing Group, 2017, 11 (11), pp.2407-2425. ⟨10.1038/ismej.2017.122⟩. ⟨pasteur-02445405⟩

P. S. Garcia, J. P. Simorre, Céline Brochier-Armanet, C. Grangeasse. Cell division of Streptococcus pneumoniae: think positive!. Current Opinion in Microbiology, Elsevier, 2016, 34, pp.18-23. ⟨10.1016/j.mib.2016.07.014⟩. ⟨hal-02012367⟩

J.J. Thiaville, S.M. Kellner, Y. Yuan, G. Hutinet, P.C. Thiaville, et al.. Novel genomic island modifies DNA with 7-deazaguanine derivatives. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2016, 113, pp.e1452-e1459. ⟨10.1073/pnas.1518570113⟩. ⟨hal-02049900⟩

J. Fraune, Céline Brochier-Armanet, M. Alsheimer, J. N. Volff, K. Schucker, et al.. Evolutionary history of the mammalian synaptonemal complex. Chromosoma, Springer Verlag, 2016, 125, pp.355-60. ⟨10.1007/s00412-016-0583-8⟩. ⟨hal-02012363⟩

Mathieu Groussin, Bastien Boussau, Gergely Szollosi, Laura Eme, Manolo Gouy, et al.. Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated. Molecular Biology and Evolution, Oxford University Press (OUP), 2016, 33 (2), pp.305 - 310. ⟨10.1093/molbev/msv249⟩. ⟨hal-01913926⟩

Alexandre Duprey, William Nasser, Simon Leonard, Céline Brochier-Armanet, S. Reverchon. Transcriptional start site turnover in the evolution of bacterial paralogous genes - the pelE-pelD virulence genes in Dickeya. FEBS Journal, Wiley, 2016, 283 (22), pp.4192-4207. ⟨hal-01997031⟩

Laetitia Attaiech, Aïda Boughammoura, Céline Brochier-Armanet, Omran Allatif, Flora Peillard-Fiorente, et al.. Silencing of natural transformation by an RNA chaperone and a multitarget small RNA. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2016, 113 (31), pp.8813-8818. ⟨10.1073/pnas.1601626113⟩. ⟨hal-01911308⟩

Frédéric Jauffrit, Simon Penel, Stéphane Delmotte, Carine Rey, Damien de Vienne, et al.. RiboDB database: a comprehensive resource for prokaryotic systematics. Molecular Biology and Evolution, Oxford University Press (OUP), 2016, 33 (8), pp.2170--2172. ⟨10.1093/molbev/msw088⟩. ⟨hal-01800061⟩

Luisa Cs Antunes, Daniel Poppleton, Andreas Klingl, Alexis Criscuolo, Bruno Dupuy, et al.. Phylogenomic analysis supports the ancestral presence of LPS-outer membranes in the Firmicutes.. eLife, eLife Sciences Publication, 2016, 5, pp.e14589. ⟨10.7554/eLife.14589.020⟩. ⟨pasteur-01362343⟩

J. B. Dacks, M. C. Field, R. Buick, L. Eme, Simonetta Gribaldo, et al.. The changing view of eukaryogenesis - fossils, cells, lineages and how they all come together. Journal of Cell Science, Company of Biologists, 2016, 129 (20), pp.3695-3703. ⟨10.1242/jcs.178566⟩. ⟨hal-02016401⟩

L Karaki, P da Silva, F Rizk, C Chouabe, N Chantret, et al.. Genome-wide analysis identifies gain and loss/change of function within the small multigenic insecticidal Albumin 1 family of Medicago truncatula. BMC Plant Biology, BioMed Central, 2016, 16 (1), pp.63. ⟨10.1186/s12870-016-0745-0⟩. ⟨hal-01287229⟩

Stéphanie Borland, Anne Oudart, Claire Prigent-Combaret, Céline Brochier-Armanet, Florence Wisniewski-Dyé. Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum. BMC Genomics, BioMed Central, 2015, 16, pp.833. ⟨10.1186/s12864-015-1962-x⟩. ⟨hal-02044935⟩

Wajdi Ben Hania, Khaled Fadhlaoui, Céline Brochier-Armanet, Cecile Persillon, Anne Postec, et al.. Draft genome sequence of Mesotoga strain PhosAC3, a mesophilic member of the bacterial order Thermotogales, isolated from a digestor treating phosphogypsum in Tunisia. Standards in Genomic Sciences, 2015, 10, ⟨10.1186/1944-3277-10-12⟩. ⟨hal-01452069⟩

C. Petitjean, P. Deschamps, P. Lopez-Garcia, D. Moreira, Céline Brochier-Armanet. Extending the conserved phylogenetic core of \textitarchaea disentangles the evolution of the third domain of life. Molecular Biology and Evolution, Oxford University Press (OUP), 2015, 32, pp.1242-54. ⟨hal-02025628⟩

S. Koechler, F. Arsene-Ploetze, Céline Brochier-Armanet, F. Goulhen-Chollet, A. Heinrich-Salmeron, et al.. Constitutive arsenite oxidase expression detected in arsenic-hypertolerant Pseudomonas xanthomarina S11. Research in microbiology, 2015, 166, pp.205-14. ⟨hal-02044782⟩

Rym Agrebi, Morgane Wartel, Céline Brochier-Armanet, Tam Mignot. An evolutionary link between capsular biogenesis and surface motility in bacteria. Nature Reviews Microbiology, Nature Publishing Group, 2015, 13 (5), pp.318--326. ⟨10.1038/nrmicro3431⟩. ⟨hal-01452071⟩

Mathilde Guzzo, Rym Agrebi, Leon Espinosa, Gregory Baronian, Virginie Molle, et al.. Evolution and Design Governing Signal Precision and Amplification in a Bacterial Chemosensory Pathway. PLoS Genetics, Public Library of Science, 2015, 11 (8), pp.e1005460. ⟨10.1371/journal.pgen.1005460⟩. ⟨hal-01452074⟩

H. Philippon, Céline Brochier-Armanet, G. Perriere. Evolutionary history of phosphatidylinositol- 3-kinases: ancestral origin in eukaryotes and complex duplication patterns. BMC Evolutionary Biology, BioMed Central, 2015, 15, pp.226. ⟨10.1186/s12862-015-0498-7⟩. ⟨hal-02025630⟩

Daniel Vinella, Frédéric Fischer, Egor Vorontsov, Julien Gallaud, Christian Malosse, et al.. Evolution of Helicobacter: Acquisition by Gastric Species of Two Histidine-Rich Proteins Essential for Colonization. PLoS Pathogens, Public Library of Science, 2015, 11 (12), pp.e1005312. ⟨10.1371/journal.ppat.1005312⟩. ⟨hal-01258641⟩

Kelle Freel, Martin Krueger, Julien Farasin, Céline Brochier-Armanet, Valérie Barbe, et al.. Adaptation in Toxic Environments: Arsenic Genomic Islands in the Bacterial Genus Thiomonas. PLoS ONE, Public Library of Science, 2015, 10 (9), pp.0139011. ⟨10.1371/journal.pone.0139011⟩. ⟨cea-01825879⟩

Kasie Raymann, Céline Brochier-Armanet, Simonetta Gribaldo. The two-domain tree of life is linked to a new root for the Archaea. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2015, 112, pp.6670-6675. ⟨10.1073/pnas.1420858112⟩. ⟨hal-02018983⟩

J. Fraune, M. Alsheimer, J. Redolfi, Céline Brochier-Armanet, R. Benavente. Protein SYCP2 Is an Ancient Component of the Metazoan Synaptonemal Complex. Cytogenetic and genome research, 2014, 144, pp.299-305. ⟨10.1159/000381080⟩. ⟨hal-02071527⟩

Hemalatha Golaconda Ramulu, Mathieu Groussin, Emmanuel Talla, Rémi Planel, Vincent Daubin, et al.. Ribosomal proteins: Toward a next generation standard for prokaryotic systematics?. Molecular Phylogenetics and Evolution, Elsevier, 2014, 75, pp.103 - 117. ⟨10.1016/j.ympev.2014.02.013⟩. ⟨hal-01913940⟩

Nadia Khelifi, Oulfat Amin Ali, Philippe Roche, Vincent Grossi, Céline Brochier-Armanet, et al.. Anaerobic oxidation of long-chain n-alkanes by the hyperthermophilic sulfate-reducing archaeon, Archaeoglobus fulgidus.. ISME Journal, Nature Publishing Group, 2014, pp.18. ⟨10.1038/ismej.2014.58⟩. ⟨hal-01165315⟩

Nc. Rochette, Céline Brochier-Armanet, M. Gouy. Phylogenomic test of the hypotheses for the evolutionary origin of eukaryotes. Molecular Biology and Evolution, Oxford University Press (OUP), 2014, 31 (4), pp.832-45. ⟨10.1093/molbev/mst272⟩. ⟨hal-02045522⟩

A. Amouric, Pierre-Pol Liebgott, M. Joseph, Céline Brochier-Armanet, J. Lorquin. Halomonas olivaria sp. nov., a moderately halophilic bacterium isolated from olive-processing effluents. International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2014, 64 (Pt 1), pp.46 - 54. ⟨10.1099/ijs.0.049007-0⟩. ⟨hal-01825480⟩

R. Zallot, Céline Brochier-Armanet, K. W. Gaston, F. Forouhar, P. A. Limbach, et al.. Plant, animal, and fungal micronutrient queuosine is salvaged by members of the DUF2419 protein family. ACS Chemical Biology, American Chemical Society, 2014, 9 (8), pp.1812-1825. ⟨10.1021/cb500278k⟩. ⟨hal-02045535⟩

Hugo Lebrette, Céline Brochier-Armanet, Barbara Zambelli, Hilde de Reuse, Elise Borezée-Durant, et al.. Promiscuous Nickel Import in Human Pathogens: Structure, Thermodynamics, and Evolution of Extracytoplasmic Nickel-Binding Proteins. Structure, Elsevier (Cell Press), 2014, 22 (10), pp.1421-1432. ⟨10.1016/j.str.2014.07.012⟩. ⟨hal-01084825⟩

Kasie Raymann, Patrick Forterre, Céline Brochier-Armanet, Simonetta Gribaldo. Global phylogenomic analysis disentangles the complex evolutionary history of DNA replication in archaea.. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2014, 6 (1), pp.192-212. ⟨10.1093/gbe/evu004⟩. ⟨hal-00957432⟩

J. Fraune, Céline Brochier-Armanet, M. Alsheimer, R. Benavente. Phylogenies of Central Element Proteins Reveal the Dynamic Evolutionary History of the Mammalian Synaptonemal Complex: Ancient and Recent Components. GENETICS, 2013, 195, pp.781--793. ⟨10.1534/genetics.113.156679⟩. ⟨hal-02281550⟩

L. Eme, Lj. Reigstad, A. Spang, A. Lanzen, T. Weinmaier, et al.. Metagenomics of Kamchatkan hot spring filaments reveal two new major (hyper)thermophilic lineages related to Thaumarchaeota. Research in microbiology, 2013, 164, pp.425--38. ⟨10.1016/j.resmic.2013.02.006⟩. ⟨hal-02281555⟩

Jérémy Andres, Florence Arsène-Ploetze, Valérie Barbe, Céline Brochier-Armanet, Jessica Cleiss-Arnold, et al.. Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26.. Genome Biol Evol, Oxford University Press, 2013, 5 (5), pp.934-53. ⟨10.1093/gbe/evt061⟩. ⟨hal-00972245⟩

Wajdi Ben Hania, Anne Postec, Thomas Aüllo, Anthony Ranchou-Peyruse, Gaël Erauso, et al.. Mesotoga infera sp. nov., a mesophilic member of the order Thermotogales, isolated from an underground gas storage aquifer.. International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2013, 63 (Pt 8), pp.3003-8. ⟨10.1099/ijs.0.047993-0⟩. ⟨hal-00972251⟩

Simonetta Gribaldo, Céline Brochier-Armanet. LUCA, ancêtre de tous les êtres vivants. Les Dossiers de la Recherche, Société d'éditions scientifiques 2013, 2, pp.29--31. ⟨hal-02281557⟩

C. Petitjean, D. Moreira, P. Lopez-Garcia, Céline Brochier-Armanet. Horizontal gene transfer of a chloroplast DnaJ-Fer protein to Thaumarchaeota and the evolutionary history of the DnaK chaperone system in Archea. BMC Evolutionary Biology, BioMed Central, 2012, 12, pp.226. ⟨10.1186/1471-2148-12-226⟩. ⟨hal-02282767⟩

Céline Brochier-Armanet, Simonetta Gribaldo. Les défis de la systématique face au monde microbien. incollection, 2012, 328, pp.49-52. ⟨hal-00698394⟩

Priya Narasingarao, Sheila Podell, Juan A Ugalde, Céline Brochier-Armanet, Joanne B Emerson, et al.. De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities.. ISME Journal, Nature Publishing Group, 2012, 6 (1), pp.81-93. ⟨10.1038/ismej.2011.78⟩. ⟨hal-00965716⟩

V. de Crécy-Lagard, F. Forouhar, Céline Brochier-Armanet, L. Tong, Jf. Hunt. Comparative genomic analysis of the DUF71/COG2102 family predicts roles in diphthamide biosynthesis and B12 salvage. Biology Direct, 2012, 7, pp.1--13. ⟨10.1186/1745-6150-7-32⟩. ⟨hal-02296989⟩

Béatrice Py, Catherine Gerez, Sandra Angelini, Rémy Planel, Daniel Vinella, et al.. Molecular organization, biochemical function, cellular role and evolution of NfuA, an atypical Fe-S carrier.. Molecular Microbiology, Wiley, 2012, 86 (1), pp.155-71. ⟨10.1111/j.1365-2958.2012.08181.x⟩. ⟨hal-01054360⟩

C. Brochier-Armanet, Simonetta Gribaldo, Patrick Forterre. Spotlight on the Thaumarchaeota. ISME Journal, Nature Publishing Group, 2012, 6, pp.227-230. ⟨10.1038/ismej.2011.145⟩. ⟨hal-00658492⟩

Simonetta Gribaldo, Céline Brochier-Armanet. Time for order in microbial systematics. Trends in Microbiology, Elsevier, 2012, 20, pp.209-210. ⟨10.1016/j.tim.2012.02.006⟩. ⟨hal-00697925⟩

L. Eme, A. Trilles, D. Moreira, Céline Brochier-Armanet. The phylogenomic analysis of the anaphase promoting complex and its targets points to complex and modern-like control of the cell cycle in the last common ancestor of eukaryotes. BMC Evolutionary Biology, BioMed Central, 2011, 11, pp.923-33. ⟨10.1186/1471-2148-11-265⟩. ⟨hal-02299282⟩

A. Heinrich-Salmeron, A. Cordi, Céline Brochier-Armanet, D. Halter, C. Pagnout, et al.. Unsuspected Diversity of Arsenite-Oxidizing Bacteria Revealed by a Widespread Distribution of the aoxB Gene in Prokaryotes. Applied and Environmental Microbiology, American Society for Microbiology, 2011, 77, pp.4685-92. ⟨10.1128/AEM.02884-10⟩. ⟨hal-00697950⟩

C. Boileau, L. Eme, Céline Brochier-Armanet, A. Janicki, C-C. Zhang, et al.. A eukaryotic-like sulfiredoxin involved in oxidative stress responses and in the reduction of the sulfinic form of 2 Cys-peroxiredoxin in the cyanobacterium Anabaena PCC 7120. New Phytologist, Wiley, 2011, 191, pp.1108-1118. ⟨10.1111/j.1469-8137.2011.03774.x⟩. ⟨hal-02303173⟩

S. Coumes-Florens, Céline Brochier-Armanet, A. Guiseppi, F. Denizot, M. Foglino. A New Highly Conserved Antibiotic Sensing/Resistance Pathway in Firmicutes Involves an ABC Transporter Interplaying with a Signal Transduction System. PLoS ONE, Public Library of Science, 2011, 6, pp.e15951. ⟨10.1371/journal.pone.0015951⟩. ⟨hal-02299257⟩

H. Trigui, Salma Masmoudi, Céline Brochier-Armanet, S. Maalej, S. Dukan. Survival of extremely and moderately halophilic isolates of Tunisian solar salterns after UV-B or oxidative stress. Canadian Journal of Microbiology, NRC Research Press, 2011, 57(11), pp.923-33. ⟨hal-00698270⟩

D. Slyemi, D. Moinier, Céline Brochier-Armanet, V. Bonnefoy, D. B. Johnson. Characteristics of a phylogenetically ambiguous, arsenic-oxidizing Thiomonas sp., Thiomonas arsenitoxydans strain 3As(T) sp. nov.. Archives of Microbiology, Springer Verlag, 2011, 193, pp.439-449. ⟨10.1007/s00203-011-0684-y⟩. ⟨hal-02297428⟩

A. Amouric, Céline Brochier-Armanet, D. B. Johnson, V. Bonnefoy, K. B. Hallberg. Phylogenetic and genetic variation among Fe(II)-oxidizing acidithiobacilli supports the view that these comprise multiple species with different ferrous iron oxidation pathways. Microbiology, 2011, 155, pp.111-122. ⟨10.1099/mic.0.044537-0⟩. ⟨hal-02303158⟩

C. Le Fourn, G. Brasseur, Céline Brochier-Armanet, L. Pieulle, A. Brioukhanov, et al.. An oxygen reduction chain in the hyperthermophilic anaerobe Thermotoga maritima highlights horizontal gene transfer between Thermococcales and Thermotogales. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2011, 13, pp.2132-45. ⟨10.1111/j.1462-2920.2011.02439.x⟩. ⟨hal-02299099⟩

H. Trigui, Salma Masmoudi, Céline Brochier-Armanet, S. Maalej, S. Dukan. Characterization of Halorubrum sfaxense sp. nov. a New Halophilic Archaeon Isolated from the Solar Saltern of Sfax in Tunisia. Int J Microbiol, 2011, --, pp.347-58. ⟨hal-00698269⟩

Céline Brochier-Armanet, Philippe Deschamps, Purificación López-García, Yvan Zivanovic, Francisco Rodríguez-Valera, et al.. Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea.. ISME Journal, Nature Publishing Group, 2011, 5 (8), pp.1291-302. ⟨10.1038/ismej.2011.16⟩. ⟨hal-00662567⟩

Wajdi Ben Hania, Ramzi Ghodbane, Anne Postec, Celine Brochier-Armanet, Moktar Hamdi, et al.. Cultivation of the first mesophilic representative ("mesotoga") within the order Thermotogales. Systematic and Applied Microbiology, Elsevier, 2011, 34, pp.581-585. ⟨10.1016/j.syapm.2011.04.001⟩. ⟨hal-00748961⟩

France Denoeud, Michaël Roussel, Benjamin Noel, Ivan Wawrzyniak, Corinne da Silva, et al.. Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite.. Genome Biology, BioMed Central, 2011, 12 (3), pp.R29. ⟨10.1186/gb-2011-12-3-r29⟩. ⟨inserm-00617212⟩

Sylvie Auxilien, Anette Rasmussen, Simon Rose, Céline Brochier-Armanet, Clotilde Husson, et al.. Specificity shifts in the rRNA and tRNA nucleotide targets of archaeal and bacterial m5U methyltransferases.. RNA, Cold Spring Harbor Laboratory Press, 2011, 17 (1), pp.45-53. ⟨10.1261/rna.2323411⟩. ⟨hal-00580893⟩

Sylvie Auxilien, Anette Rasmussen, Simon Rose, Céline Brochier-Armanet, Clotilde Husson, et al.. Specificity shifts in the rRNA and tRNA nucleotide targets of archaeal and bacterial m5U methyltransferases.. RNA, Cold Spring Harbor Laboratory Press, 2011, 17 (1), pp.45-53. ⟨10.1261/rna.2323411⟩. ⟨hal-00572515⟩

F. Pompeo, J. Luciano, Céline Brochier-Armanet, A. Galinier. The GTPase Function of YvcJ and Its Subcellular Relocalization Are Dependent on Growth Conditions in Bacillus subtilis. Journal of Molecular Microbiology and Biotechnology, Karger, 2011, 20, pp.156-67. ⟨hal-00698146⟩

J. Luciano, R. Agrebi, A.V. Le Gall, M. Wartel, F. Fiegna, et al.. Emergence and Modular Evolution of a Novel Motility Machinery in Bacteria. PLoS Genetics, Public Library of Science, 2011, 7 (9), pp.1409-1418. ⟨10.1371/journal.pgen.1002268⟩. ⟨hal-00698033⟩

Hana Trigui, Salma Masmoudi, Céline Brochier-Armanet, Aude Barani, Gérald Grégori, et al.. Characterization of heterotrophic prokaryote subgroups in the Sfax coastal solar salterns by combining flow cytometry cell sorting and phylogenetic analysis. Extremophiles, Springer Verlag, 2011, 15, pp.347-358. ⟨10.1007/s00792-011-0364-5⟩. ⟨hal-00598296⟩

E. Durand, S. Alphonse, Céline Brochier-Armanet, G. Ball, Badreddine Douzi, et al.. The Assembly Mode of the Pseudopilus: a hallmark to distinguish a novel secretion system subtype. Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2011, 286 (27), pp.24407-24416. ⟨10.1074/jbc.M111.234278⟩. ⟨hal-02299276⟩

Elie Desmond, Celine Brochier-Armanet, Patrick Forterre, Simonetta Gribaldo. On the last common ancestor and early evolution of eukaryotes: reconstructing the history of mitochondrial ribosomes.. Research in Microbiology, Elsevier, 2011, 162 (1), pp.53-70. ⟨10.1016/j.resmic.2010.10.004⟩. ⟨hal-00658502⟩

Celine Brochier-Armanet, Patrick Forterre, Simonetta Gribaldo. Phylogeny and evolution of the Archaea: one hundred genomes later.. Current Opinion in Microbiology, Elsevier, 2011, epub ahead of print. ⟨10.1016/j.mib.2011.04.015⟩. ⟨hal-00598326⟩

Simonetta Gribaldo, Patrick Forterre, Celine Brochier-Armanet. Archaea and the tree of life. Research in Microbiology, Elsevier, 2011, 162 (1), pp.1-4. ⟨10.1016/j.resmic.2010.11.007⟩. ⟨hal-00596061⟩

R. Salacha, F. Kovacic, Céline Brochier-Armanet, S. Wilhelm, J. Tommassen, et al.. The Pseudomonas aeruginosa patatin-like protein PlpD is the archetype of a novel Type V secretion system. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2010, 12 (6), pp.1498-512. ⟨10.1111/j.1462-2920.2010.02174.x⟩. ⟨hal-00698204⟩

A. Spang, R. Hatzenpichler, Céline Brochier-Armanet, T. Rattei, P. Tischler, et al.. Distinct gene set in two different lineages of ammoniaoxidizing archaea supports the phylum Thaumarchaeota. Trends Microbiol, 2010, 18(8), pp.331-40. ⟨hal-00698225⟩

G. Perrière, C. Brochier-Armanet. Concepts et méchodes en phylogénie moléculaire. incollection, 2010, --, pp.63-65. ⟨hal-00539266⟩

Valérie de Crécy-Lagard, Céline Brochier-Armanet, Jaunius Urbonavicius, Bernard Fernandez, Gabriela Phillips, et al.. Biosynthesis of wyosine derivatives in tRNA: an ancient and highly diverse pathway in Archaea.. Molecular Biology and Evolution, Oxford University Press (OUP), 2010, 27 (9), pp.2062-77. ⟨10.1093/molbev/msq096⟩. ⟨hal-00534355⟩

C.B. Walker, J.R. La Torre, M.G. Klotz, H. Urakawa, N. Pinel, et al.. Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2010, 107 (19), pp.8818-23. ⟨10.1073/pnas.0913533107⟩. ⟨hal-00698318⟩

Simonetta Gribaldo, Anthony M. Poole, Vincent Daubin, Patrick Forterre, C. Brochier-Armanet. The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse?. Nature Reviews Microbiology, Nature Publishing Group, 2010, 8 (10), pp.743-753. ⟨10.1038/nrmicro2426⟩. ⟨hal-00539502⟩

Florence Arsène-Ploetze, Sandrine Koechler, Marie Marchal, Jean-Yves Coppée, Michael Chandler, et al.. Structure, function, and evolution of the Thiomonas spp. genome.. PLoS Genetics, Public Library of Science, 2010, 6 (2), pp.e1000859. ⟨10.1371/journal.pgen.1000859⟩. ⟨hal-00463879⟩

J. Oberto, N. Breuil, A. Hecker, F. Farina, Céline Brochier-Armanet, et al.. Qri7/OSGEPL the mitochondrial version of the universal Kae1/YgjD protein is essential for mitochondrial genome maintenance. Nucleic Acids Research, Oxford University Press, 2009, 37, pp.5343-52. ⟨hal-00698096⟩

D. Vinella, Céline Brochier-Armanet, L. Loiseau, E. Talla, F. Barras. Iron-sulfur (Fe/S) protein biogenesis: phylogenomic and genetic studies of A-type carriers. PLoS Genetics, Public Library of Science, 2009, 5, pp.261-268. ⟨hal-00698313⟩

Patrick Forterre, Simonetta Gribaldo, Céline Brochier-Armanet. Happy together: genomic insights into the unique Nanoarchaeum/Ignicoccus association.. Journal of Biology, BioMed Central, 2009, 8 (1), pp.7. ⟨10.1186/jbiol110⟩. ⟨hal-00362871⟩

Simonetta Gribaldo, Céline Brochier-Armanet. Phylogeny of prokaryotes: does it exist and why should we care?. Research in Microbiology, Elsevier, 2009, 160, pp.513-21. ⟨hal-00697932⟩

Jacques Oberto, Norman Breuil, Arnaud Hecker, Francesca Farina, Céline Brochier-Armanet, et al.. Qri7/OSGEPL, the mitochondrial version of the universal Kae1/YgjD protein, is essential for mitochondrial genome maintenance.. Nucleic Acids Research, Oxford University Press, 2009, epub ahead of print. ⟨10.1093/nar/gkp557⟩. ⟨hal-00404453⟩

F. Guyon, Céline Brochier-Armanet, A. Guénoche. Comparison of alignment free string distances for complete genome phylogeny. Advances in Data Analysis and Classification, Springer Verlag, 2009, 3, pp.95-108. ⟨hal-00697936⟩

J. Urbonavicius, S. Auxilien, H. Walbott, K. Trachana, B. Golinelli-Pimpaneau, et al.. Acquisition of a bacterial RumA-type tRNA(uracil-54 C5)methyltransferase by Archaea through an ancient horizontal gene transfer. Molecular Microbiology, Wiley, 2008, 67, pp.323-335. ⟨hal-00698274⟩

D. Moreira, Céline Brochier-Armanet. Giant viruses giant chimeras: The multiple evolutionary histories of Mimivirus genes. BMC Evolutionary Biology, BioMed Central, 2008, 8, pp.1-7. ⟨hal-00698068⟩

Jaunius Urbonavicius, Sylvie Auxilien, Hélène Walbott, Kalliopi Trachana, Béatrice Golinelli-Pimpaneau, et al.. Acquisition of a bacterial RumA-type tRNA(uracil-54, C5)-methyltransferase by Archaea through an ancient horizontal gene transfer.. Molecular Microbiology, Wiley, 2008, 67 (2), pp.323-35. ⟨10.1111/j.1365-2958.2007.06047.x⟩. ⟨hal-02287548⟩

P. Hingamp, Céline Brochier-Armanet, E. Talla, D. Gautheret, D. Thieffry, et al.. Metagenome Annotation Using a Distributed Grid of Undergraduate Students. PLoS Biology, Public Library of Science, 2008, 6, pp.239-241. ⟨hal-00697953⟩

Simonetta Gribaldo, Patrick Forterre, Céline Brochier-Armanet. Les Archaea : évolution et diversité du troisième domaine du vivant. Bulletin - Société Française de Microbiologie, Société Française de Microbiologie, 2008, 23 (3), pp.137-145. ⟨hal-00697926⟩

Céline Brochier-Armanet, Bastien Boussau, Simonetta Gribaldo, Patrick Forterre. Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota.. Nature Reviews Microbiology, Nature Publishing Group, 2008, 6 (3), pp.245-252. ⟨10.1038/nrmicro1852⟩. ⟨hal-00256781⟩

Céline Brochier-Armanet, Simonetta Gribaldo, Patrick Forterre. A DNA topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya.. Biol Direct, 2008, 3, pp.54. ⟨10.1186/1745-6150-3-54⟩. ⟨hal-00353347⟩

N. Chomont, H. Hocini, G. Gresenguet, Céline Brochier-Armanet, H. Bouhlal, et al.. Early archives of genetically-restricted proviral DNA in the female genital tract after heterosexual transmission of HIV-1. AIDS, Lippincott, Williams & Wilkins, 2007, 21, pp.153--162. ⟨hal-01887880⟩

A. Hecker, N. Leulliot, D. Gadelle, M. Graille, A. Justome, et al.. An archaeal orthologue of the universal protein Kae1 is an iron metalloprotein which exhibits atypical DNA-binding properties and apurinic-endonuclease activity in vitro. Nucleic Acids Research, Oxford University Press, 2007, 35, pp.6042-51. ⟨hal-00697938⟩

J. Urbonavicius, Céline Brochier-Armanet, S. Skouloubris, H. Myllykallio, H. Grosjean. In vitro detection of the enzymatic activity of folate-dependent tRNA(U54 C5)methyltransferase. Methods in Enzymology, Elsevier, 2007, 25, pp.103-19. ⟨hal-00698275⟩

V. de Crécy-Lagard, C. Marck, Céline Brochier-Armanet, H. Grosjean. Comparative RNomics and modomics in mollicutes: prediction of gene function and evolutionary implications. IUBMB Life, Wiley, 2007, 59, pp.634-58. ⟨hal-00698407⟩

Jaunius Urbonavicius, Céline Brochier-Armanet, Stéphane Skouloubris, Hannu Myllykallio, Henri Grosjean. In vitro detection of the enzymatic activity of folate-dependent tRNA (Uracil-54,-C5)-methyltransferase: evolutionary implications.. Methods in Enzymology, Elsevier, 2007, 425, pp.103-19. ⟨10.1016/S0076-6879(07)25004-9⟩. ⟨hal-00264052⟩

Elie Desmond, Céline Brochier-Armanet, Simonetta Gribaldo. Phylogenomics of the archaeal flagellum: rare horizontal gene transfer in a unique motility structure. BMC Evolutionary Biology, BioMed Central, 2007, 7, pp.53-70. ⟨10.1186/1471-2148-7-106⟩. ⟨hal-00698404⟩

Arnaud Hecker, Nicolas Leulliot, Danièle Gadelle, Marc Graille, Anthony Justome, et al.. An archaeal orthologue of the universal protein Kae1 is an iron metalloprotein which exhibits atypical DNA-binding properties and apurinic-endonuclease activity in vitro.. Nucleic Acids Research, Oxford University Press, 2007, 35 (18), pp.6042-51. ⟨10.1093/nar/gkm554⟩. ⟨hal-00195238⟩

Simonetta Gribaldo, Céline Brochier-Armanet. The origin and evolution of Archaea: a state of the art. Philos Trans R Soc Lond B Biol Sci, 2006, 361, pp.1007-22. ⟨hal-00697930⟩

Patrick Forterre, Simonetta Gribaldo, Céline Brochier. [Luca: the last universal common ancestor]. médecine/sciences, EDP Sciences, 2005, 21 (10), pp.860-5. ⟨hal-00196820⟩

P. Lopez-Garcia, Céline Brochier-Armanet, D. Moreira, F. Rodriguez-Valera. Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2004, 6, pp.19-34. ⟨hal-00698028⟩

O. Matte-Tailliez, Céline Brochier-Armanet, Patrick Forterre, H. Philippe. Archaeal phylogeny based on ribosomal proteins. Mol Biol Evol, 2002, 19, pp.631-639. ⟨hal-00698045⟩

Céline Brochier, Eric Bapteste, David Moreira, Hervé Philippe. Eubacterial phylogeny based on translational apparatus proteins. Trends in Genetics, Elsevier, 2002, 18 (1), pp.1-5. ⟨10.1016/s0168-9525(01)02522-7⟩. ⟨hal-02335701⟩

Céline Brochier-Armanet, H. Philippe. Phylogénies moléculaires et génomes. incollection, 2000, 206, pp.50-53. ⟨hal-00698388⟩

Céline Brochier, Hervé Philippe, David Moreira. The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome. Trends in Genetics, Elsevier, 2000, 16 (12), pp.529-533. ⟨10.1016/s0168-9525(00)02142-9⟩. ⟨hal-02335661⟩

Hugo Lebrette, Christine Cavazza, Céline Brochier-Armanet, Elise Borezée-Durant. Nickel import in bacteria, structural study of extracytoplasmic nickel-binding proteins. 16. International Conference on Biological Inorganic Chemistry (ICBIC), IMBG. Saint Ismier, FRA., Jul 2013, Grenoble, France. pp.1. ⟨hal-01204369⟩

Lorine Bethencourt, N. Taib, J. Briolay, P. Fournier, M.P. Fernandez, et al.. Exploration of Frankia genomes to identify genetic determinants involved in sporogenesis: Towards promising tracks to understand in plant sporuration. 18th International Meeting on Frankia and Actinorhizal plants, Aug 2015, Montpellier, France. ⟨hal-01321463⟩

G. Perrière, Céline Brochier-Armanet. Concepts et méthodes en phylogénie moléculaire. Springer. 2010, 978-2-287-99047-2. ⟨hal-02091278⟩

Dominique Joly, Celine Brochier-Armanet. Article 5. L’émergence des eucaryotes : une mosaïque d’ADN. 101 secrets de l’ADN. CNRS Éditions, Paris, pp 39-41, pp.39-41, 2019. ⟨hal-02397696⟩

Pierre Caumette, Céline Brochier-Armanet, Philippe Normand. Taxonomy and Phylogeny of Prokaryotes. Jean-Claude Bertrand; Pierre Caumette; Philippe Lebaron; Robert Matheron; Philippe Normand; Télesphore Sime-Ngando. Environmental Microbiology: Fundamentals and Applications, Springer Netherlands, pp.145-190, 2015, 978-94-017-9118-2. ⟨10.1007/978-94-017-9118-2_6⟩. ⟨hal-02477161⟩

Pierre Caumette, Céline Brochier-Armanet, Philippe Normand. Taxonomie et phylogénie des procaryotes. Chapitre 6. Ecologie Microbienne : Microbiologie des milieux naturels et anthropisés, Presses Universitaires de Pau et des Pays de l'Adour, 1004 p., 2011, 2-35311-022-3 9782353110223. ⟨hal-02802279⟩

J.C. Bertrand, Céline Brochier-Armanet, Manolo Gouy, F. Westall. Pendant trois milliards d'années les micro-organismes sont les seuls habitants de la terre. Ecologie microbienne : Microbiologie des milieux naturels et anthropisés, --, Presses Universitaires de Pau et des Pays de l'Adour, pp.94-U259, 2011, 2-35311-022-3 9782353110223. ⟨hal-00698386⟩