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  • IdHAL : celia-michotey

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Journal articles10 documents

  • Raquel Benavides, Bárbara Carvalho, Cristina Bastias, David López‐quiroga, Antonio Mas, et al.. The GenTree Leaf Collection: Inter‐ and intraspecific leaf variation in seven forest tree species in Europe. Global Ecology and Biogeography, Wiley, 2021, 30 (3), pp.590-597. ⟨10.1111/geb.13239⟩. ⟨hal-03282266⟩
  • Lars Opgenoorth, Benjamin Dauphin, Raquel Benavides, Katrin Heer, Paraskevi Alizoti, et al.. The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species. GigaScience, BioMed Central, 2021, 10 (3), pp.giab010. ⟨10.1093/gigascience/giab010⟩. ⟨hal-03282821⟩
  • Elisabet Martínez-Sancho, Lenka Slámová, Sandro Morganti, Claudio Grefen, Barbara Carvalho, et al.. Author Correction: The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe. Scientific Data , Nature Publishing Group, 2020, 7 (1), ⟨10.1038/s41597-020-0447-1⟩. ⟨hal-03282224⟩
  • Evangelia Papoutsoglou, Daniel Faria, Daniel Arend, Elizabeth Arnaud, Ioannis Athanasiadis, et al.. Enabling reusability of plant phenomic datasets with MIAPPE 1.1. New Phytologist, Wiley, 2020, 227 (1), pp.260-273. ⟨10.1111/nph.16544⟩. ⟨hal-02949641⟩
  • Cyril Pommier, Célia Michotey, Guillaume Cornut, Pierre Roumet, Eric Duchêne, et al.. Applying FAIR principles to plant phenotypic data management in GnpIS. Plant Phenomics, Science Partner Journals, 2019, 2019, pp.1-15. ⟨10.34133/2019/1671403⟩. ⟨hal-02624031⟩
  • Michael Alaux, Jane Rogers, Thomas Letellier, Raphaël Flores, Françoise Alfama, et al.. Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data. Genome Biology, BioMed Central, 2018, 19 (1), pp.905-911. ⟨10.1186/s13059-018-1491-4⟩. ⟨hal-02278879⟩
  • Christophe Plomion, Jean-Marc Aury, Joelle Amselem, Thibault Leroy, Florent Murat, et al.. Oak genome reveals facets of long lifespan. Nature Plants, Nature Publishing Group, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩. ⟨hal-01820559⟩
  • Christophe Plomion, Jean-Marc Aury, Joëlle Amselem, Tina Alaeitabar, Valérie Barbe, et al.. Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies.. Molecular Ecology Resources, Wiley/Blackwell, 2015, 16 (1), pp.254-265. ⟨10.1111/1755-0998.12425⟩. ⟨hal-01579667⟩
  • Raluca Uricaru, Célia Michotey, Hélène Chiapello, Eric Rivals. YOC, A new strategy for pairwise alignment of collinear genomes. BMC Bioinformatics, BioMed Central, 2015, 16 (1), pp.16:111. ⟨10.1186/s12859-015-0530-3⟩. ⟨lirmm-01170968⟩
  • Delphine Steinbach, Michael Alaux, Joelle Amselem, Nathalie Choisne, Sophie Durand, et al.. GnpIS: an information system to integrate genetic and genomic data from plants and fungi. Database - The journal of Biological Databases and Curation, Oxford University Press, 2013, 2013, pp.1-9. ⟨10.1093/database/bat058⟩. ⟨hal-02648084⟩

Conference papers19 documents

  • Cyril Pommier, Guillaume Cornut, Michael Alaux, Windpouire Esther Dzale Yeumo, Raphaël Flores, et al.. Developing infrastructures for FAIR data in plant biology. Gatersleben Research Conference - Applied Bioinformatics for crops (GRC2019), IPK, Mar 2019, Gatersleben, Germany. ⟨hal-03316569⟩
  • Cyril Pommier, Guillaume Cornut, Thomas Letellier, Célia Michotey, Pascal Neveu, et al.. Data standards for plant phenotyping: MIAPPE and its implementations. 26. Plant and Animal Genome Conference (PAG XXVI), Jan 2018, San Diego, Californie, United States. pp.24 slides. ⟨hal-02789754⟩
  • Michael Alaux, Cyril Pommier, Esther Dzale Yeumo, Sophie Durand, Raphaël Flores, et al.. Improving the « FAIRness » of Inra’s data for plant biology and breeding. PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.14 slides. ⟨hal-02790227⟩
  • Michael Alaux, Jane Rogers, Thomas Letellier, Raphaël Flores, Cyril Pommier, et al.. The IWGSC Data repository and wheat data resources hosted at URGI: Overview and perspectives. PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.32 slides. ⟨hal-02788401⟩
  • Joëlle Amselem, Nicolas Francillonne, Célia Michotey, Thomas Letellier, Jean-Marc Aury, et al.. An integrated information system dedicated to oak genomics and genetics. PAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides. ⟨hal-01839185⟩
  • Cyril Pommier, Eric Duchêne, Thierry Lacombe, Timothée Flutre, Michael Alaux, et al.. Developing grapevine FAIR Data. PAG Conference 2018, Jan 2018, San Diego, United States. ⟨hal-02738117⟩
  • Sophie Durand, Windpouire Esther Dzale Yeumo, Cyril Pommier, Michael Alaux, Guillaume Cornut, et al.. Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRA. 4. International Symposium on Genomics of Plant Genetic Resources, Sep 2017, Giessen, Germany. pp.17 slides. ⟨hal-02791168⟩
  • Michael Alaux, Thomas Letellier, Françoise Alfama Depauw, Jane Rogers, Frédéric Choulet, et al.. The IWGSC Reference genome browser, data mining and beyond. PAG XXV - Plant and Animal Genome Conference, Jan 2017, San Diego, United States. ⟨hal-02788141⟩
  • Célia Michotey, Christel Anger, François Ehrenmann, Odile Rogier, Véronique Jorge, et al.. Forest tree GnpIS: an information system dedicated to forest tree genetics, genomics and phenomics. IUFRO Genomics and Forest Tree Genetics, May 2016, Arcachon, France. ⟨hal-02740283⟩
  • Michael Alaux, Thomas Letellier, Françoise Alfama-Depauw, Veronique Jamilloux, Jane Rogers, et al.. IWGSC Sequence Repository: Moving towards tools to facilitate data integration for the reference sequence of wheat. PAG XXIV - Plant and Animal Genome Conference, Jan 2016, San Diego, United States. ⟨hal-01266518⟩
  • Cyril Pommier, Michael Alaux, Windpouire Esther Dzale Yeumo, Guillaume Cornut, Sophie Durand, et al.. Contribution to a European roadmap for data standardisation in Plant Science at URGI-INRA. Plant Biology Europe EPSO / FESBP 2016 Congress, Jun 2016, Prague, Czech Republic. ⟨hal-02794139⟩
  • Delphine Steinbach, Guillaume Merceron, Célia Michotey, Raphaël-Gauthier Flores, Nacer Mohellibi, et al.. GnpIS-Asso : A Generic Database for Managing and Exploiting Plant Genetic Association Studies Results Using High Throughput Genotyping and Phenotyping Data. 23. Plant and Animal Genome, Jan 2015, San Diego, United States. ⟨hal-01174322⟩
  • Nacer Mohellibi, Nathalie Choisne, Aminah Keliet, Daphné Verdelet, Françoise Alfama, et al.. Grape@GnpIS: Overview of the GnpIS grape genomics and genetics integrative resource. 23. Plant and Animal Genome (PAG XXIII), Jan 2015, San Diego, Californie, United States. pp.24 slides. ⟨hal-02741780⟩
  • Cyril Pommier, Pawel Krajewski, Thomas Letellier, Hanna Cwiek, Célia Michotey, et al.. Phenotypic Data Exchange and Processing Using ISA-Tab Standard: transPLANT Project Use Case with GnpIS.Ephesis and Bii. 23. Plant and Animal Genome (PAG), Jan 2015, San Diego, United States. ⟨hal-02739236⟩
  • Cyril Pommier, Michael Alaux, Sophie Durand, Raphaël-Gauthier Flores, Aminah Keliet, et al.. Information system for phenotype data: trait, trials and genotypes identification and integration. 22. Conference Plant and Animal Genome, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI). GBR., Jan 2014, San Diego, United States. ⟨hal-02795958⟩
  • Célia Michotey, Frédéric Sapet, Pierre Dubreuil, Jacques Le Gouis, Mathilde Causse, et al.. A generic tool for managing and exploiting genetic association studies results using high throughput genotyping and phenotyping. Plant Genomics Seminar 2012, Apr 2012, Pont-Royal en Provence, France. ⟨hal-01268379⟩
  • Célia Michotey, Ludovic Legrand, Helene Chiapello, Valentin Loux, Annie Gendrault-Jacquemard, et al.. Web services for microbial genome annotation using data integration. JOBIM 2010 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Sep 2010, Montpellier, France. ⟨hal-02752226⟩
  • Raluca Uricaru, Célia Michotey, Laurent Noé, Helene Chiapello, Eric Rivals. Improved sensitivity and reliability of anchor based genome alignment. JOBIM - Journées Ouvertes en Biologie Informatique Mathématiques2009 - Nantes :, Jun 2009, Nantes, France. 259 p. ⟨hal-02751358⟩
  • Raluca Uricaru, Célia Michotey, Laurent Noé, Hélène Chiapello, Eric Rivals. Improved Sensitivity And Reliability Of Anchor Based Genome Alignment. JOBIM'09 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2009, Nantes, France. pp.31-36. ⟨lirmm-00407215⟩

Poster communications5 documents

  • Sophie Durand, Esther Dzale Yeumo, Cyril Pommier, Michaël Alaux, Guillaume Cornut, et al.. Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRA. Crop diversification in a changing world : Mobilizing the green gold of plant genetic resources, May 2017, Montpellier, France. 2017, EUCARPIA Genetic Resources 2017. ⟨hal-01606277⟩
  • Nicolas Francillonne, Catherine Bodénès, François Ehrenmann, Célia Michotey, Antoine Kremer, et al.. Detection of WUE positional candidate genes by combining QTL maps and BAC sequencing with the annotated oak genome sequence. Genomics and Forest Tree Genetics Conference, May 2016, Arcachon, France. 134 p., 2016, Book of abstracts. ⟨hal-02741266⟩
  • Célia Michotey, Christel Anger, François Ehrenmann, Odile Rogier, Véronique Jorge, et al.. Forest tree GnpIS: an information system dedicated to forest tree genetics, genomics and phenomics. 35. New Phytologist Symposium, Jun 2015, Boston, United States. 2015. ⟨hal-02795537⟩
  • Nicolas Francillonne, Tina Alaeitabar, Françoise Alfama-Depauw, Loïc Couderc, Claire Guerche, et al.. A computational architecture designed for genome annotation: oak genome sequencing project as a use case. JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-ferrand, France. 2015. ⟨hal-01246649⟩
  • Célia Michotey, Nacer Mohellibi, Hadi Quesneville, Delphine Steinbach. GnpSeq NGS: a new tool to manage NGS data in URGI's information system (GnpIS). JOBIM 2012 : Journées Ouvertes en Biologie, Informatique et Mathématiques, 2012, 2012. ⟨hal-02807359⟩

Book sections1 document

  • Anne-Francoise Adam-Blondon, Michael Alaux, Sophie Durand, Thomas Letellier, Guillaume Merceron, et al.. Mining plant genomic and genetic data using the GnpIS information system. Aalt D.J van Dijk. Plant Genomics Databases. Methods and Protocols, 1533, Springer, 2017, Methods in Molecular Biology, 978-1-4939-6658-5. ⟨10.1007/978-1-4939-6658-5_5⟩. ⟨hal-03206731⟩

Reports2 documents

  • Christian Pichot, Philippe Clastre, Amélie Fiocca, Céline Meredieu, Laurent Saint‐andré, et al.. Mise en place du système d'information pour la gestion des données des dispositifs expérimentaux de l’infrastructure nationale IN-SYLVA France (adaptation des forêts et l’innovation sylvicole).. [Rapport de recherche] INRAE; OFB; CIRAD; FCBA; CNPF; ONF; Université de Rouen - Normandie. 2021, 36p. ⟨hal-03341438⟩
  • Windpouire Esther Dzale Yeumo, Lydie Soler, Michael Alaux, Robert Bossy, Sebastien Carrere, et al.. Rapport de synthèse du chantier DOI. [Autre] 2014, 47 p. ⟨hal-02801364⟩

Lectures1 document

  • Cyril Pommier, Anne-Françoise Adam-Blondon, Célia Michotey. Plant Data Managment for Phenotyping Experiments: Data standards and use cases for plant scientists and informaticians. École thématique. France. 2020. ⟨hal-03102944⟩