Cédric Midoux

Bioinfo

82%

Libre accès

Documents

Affiliations actuelles

1002496
1002434
1169987

Identifiants chercheurs

cedric-midoux
0000-0002-7964-0929
Google Scholar : https://scholar.google.fr/citations?user=lAzGLCIAAAAJ&hl=fr

Contact

Publications

	Study of a Pilot Scale Microbial Electrosynthesis Reactor for Organic Waste Biorefinery Jiang-Hao Tian , Rémy Lacroix , Asim Ali Yaqoob , Chrystelle Bureau , Cédric Midoux Energies, 2023, 16 (2), pp.591. ⟨10.3390/en16020591⟩ Article dans une revue hal-03922462v1
	The electrochemical microbial tree: A new concept for wastewater treatment Morgane Hoareau , Luc Etcheverry , Olivier Chapleur , Chrystelle Bureau , Cédric Midoux Chemical Engineering Journal, 2023, 454 (3), pp.140295. ⟨10.1016/j.cej.2022.140295⟩ Article dans une revue hal-03851691v1
	Impacts of disinfected wastewater irrigation on soil characteristics, microbial community composition, and crop yield Lays Paulino Leonel , Ariane Bize , Mahendra Mariadassou , Cédric Midoux , Jerusa Schneider Blue-Green Systems, 2022, 4 (2), pp.247-271. ⟨10.2166/bgs.2022.126⟩ Article dans une revue hal-03894086v1
	Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics Vuong Quoc Hoang Ngo , François Enault , Cédric Midoux , Mahendra Mariadassou , Olivier Chapleur Environmental Microbiology, 2022, ⟨10.1111/1462-2920.16120⟩ Article dans une revue hal-03727436v1
	Investigation of the Phageome and Prophages in French Cider, a Fermented Beverage Pierre Ledormand , Nathalie Desmasures , Cédric Midoux , Olivier Rué , Marion Dalmasso Microorganisms, 2022, 10 (6), pp.1203. ⟨10.3390/microorganisms10061203⟩ Article dans une revue hal-03693766v1
	Metataxonomics, metagenomics, metabolomics analysis of the influence of temperature modification in full-scale anaerobic digesters Francesc Puig-Castellví , Cédric Midoux , Angéline Guenne , Delphine Conteau , Oscar Franchi Bioresource Technology, 2022, 346, pp.126612. ⟨10.1016/j.biortech.2021.126612⟩ Article dans une revue hal-03507080v1
	Virulent Phages Isolated from a Smear-Ripened Cheese Are Also Detected in Reservoirs of the Cheese Factory Thomas Paillet , Julien Lossouarn , Clarisse Figueroa , Cédric Midoux , Olivier Rué Viruses, 2022, 14 (8), pp.1620. ⟨10.3390/v14081620⟩ Article dans une revue hal-03738602v1
	Methane production and microbial community acclimation of five manure inocula during psychrophilic anaerobic digestion of swine manure Thomas Lendormi , Kaïs Jaziri , Fabrice Béline , Sophie Leroux , Chrystelle Bureau Journal of Cleaner Production, 2022, 340, 11 p. ⟨10.1016/j.jclepro.2022.130772⟩ Article dans une revue hal-03574579v1
	Mining the equine gut metagenome: poorly-characterized taxa associated with cardiovascular fitness in endurance athletes Núria Mach , Cédric Midoux , Sébastien Leclercq , Samuel Pennarun , Laurence Le Moyec Communications Biology, 2022, 5, pp.1032. ⟨10.1038/s42003-022-03977-7⟩ Article dans une revue hal-03794437v2
	A longitudinal study of the effect of temperature modification in full-scale anaerobic digesters – dataset combining 16S rDNA gene sequencing, metagenomics, and metabolomics data Francesc Puig-Castellví , Cédric Midoux , Angéline Guenne , Delphine Conteau , Oscar Franchi Data in Brief, 2022, 41, pp.107960. ⟨10.1016/j.dib.2022.107960⟩ Article dans une revue hal-03585428v1
	Molecular approaches to uncover phage-lactic acid bacteria interactions in a model community simulating fermented beverages Pierre Ledormand , Nathalie Desmasures , Benoit Bernay , Didier Goux , Oliver Rué Food Microbiology, 2022, 107, pp.104069. ⟨10.1016/j.fm.2022.104069⟩ Article dans une revue hal-03696589v1
	Microbial and functional characterization of granulated sludge from full-scale UASB thermophilic reactor applied to sugarcane vinasse treatment Franciele Pereira Camargo , Isabel Kimiko Sakamoto , Tiago Palladino Delforno , Cédric Midoux , Iolanda Cristina Silveira Duarte Environmental Technology, 2022, pp.1-42. ⟨10.1080/09593330.2022.2052361⟩ Article dans une revue hal-03634517v1
	Microbial and functional characterization of an allochthonous consortium applied to hydrogen production from Citrus Peel Waste in batch reactor in optimized conditions Franciele Pereira Camargo , Isabel Kimiko Sakamoto , Tiago Palladino Delforno , Mahendra Mariadassou , Valentin Loux Journal of Environmental Management, 2021, 291, pp.112631. ⟨10.1016/j.jenvman.2021.112631⟩ Article dans une revue hal-03211333v1
	Oxygen-reducing bidirectional microbial electrodes designed in real domestic wastewater Morgane Hoareau , Benjamin Erable , Olivier Chapleur , Cédric Midoux , Chrystelle Bureau Bioresource Technology, 2021, 326, pp.0. ⟨10.1016/j.biortech.2021.124663⟩ Article dans une revue hal-03129147v1
	Electrochemical analysis of a microbial electrochemical snorkel in laboratory and constructed wetlands Joanna Rogińska , Michel Perdicakis , Cédric Midoux , Théodore Bouchez , Christelle Despas Bioelectrochemistry, 2021, 142, pp.107895. ⟨10.1016/j.bioelechem.2021.107895⟩ Article dans une revue hal-03318075v1
	Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions E. Lejal , J. Chiquet , J. Aubert , S. Robin , A. Estrada-Peña Microbiome, 2021, 9 (1), pp.153. ⟨10.1186/s40168-021-01051-8⟩ Article dans une revue hal-03287263v1
	Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history Ariane Bize , Cédric Midoux , Mahendra Mariadassou , Sophie Schbath , Patrick Forterre BMC Genomics, 2021, 22, ⟨10.1186/s12864-021-07471-y⟩ Article dans une revue hal-03176011v1
	Denitrifying bio-cathodes developed from constructed wetland sediments exhibit electroactive nitrate reducing biofilms dominated by the genera Azoarcus and Pontibacter Timothé Philippon , Jiang-Hao Tian , Chrystelle Bureau , Cédric Chaumont , Cédric Midoux Bioelectrochemistry, 2021, 140, pp.107819. ⟨10.1016/j.bioelechem.2021.107819⟩ Article dans une revue hal-03196902v1
	Assessing the quality of fresh Whitemouth croaker (Micropogonias furnieri) meat based on micro‐organism and histamine analysis using NGS, qPCR and HPLC‐DAD Alessandra Danile de Lira , Caroline Isabel Kothe , Olivier Rué , Cédric Midoux , Michele Bertoni Mann Journal of Applied Microbiology, 2020, 128 (5), pp.1448-1459. ⟨10.1111/jam.14566⟩ Article dans une revue hal-02903118v1
	Taxon appearance from extraction and amplification steps demonstrates the value of multiple controls in tick microbiome analysis Emilie Lejal , Agustin Estrada-Peña , Maud Marsot , Jean-Francois J.-F. Cosson , Olivier Rué Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.01093⟩ Article dans une revue hal-02790980v1
	Integrating independent microbial studies to build predictive models of anaerobic digestion inhibition by ammonia and phenol Simon Poirier , Sébastien Dejean , Cédric Midoux , Kim-Anh Lê Cao , Olivier Chapleur Bioresource Technology, 2020, 316, pp.123952. ⟨10.1016/j.biortech.2020.123952⟩ Article dans une revue hal-02907466v1
	The Basis for Natural Multiresistance to Phage in Pseudomonas aeruginosa Christine Pourcel , Cédric Midoux , Gilles Vergnaud , Libera Latino Antibiotics, 2020, 9 (6), pp.339. ⟨10.3390/antibiotics9060339⟩ Article dans une revue hal-02890481v1
	Investigation of $Pseudomonas\ aeruginosa$ strain PcyII-10 variants resisting infection by N4-like phage Ab09 in search for genes involved in phage adsorption Libera Latino , Cédric Midoux , Gilles Vergnaud , Christine Pourcel PLoS ONE, 2019, 14 (4), pp.e0215456. ⟨10.1371/journal.pone.0215456⟩ Article dans une revue hal-02173138v1
	Comparative metatranscriptomic analysis of anaerobic digesters treating anionic surfactant contaminated wastewater Tiago P. Delforno , Thais Z. Macedo , Cedric Midoux , Gileno V. Lacerda , Olivier Rué Science of the Total Environment, 2019, 2019 (649), pp.482-494. ⟨10.1016/j.scitotenv.2018.08.328⟩ Article dans une revue hal-01888286v1
	Transposition behavior revealed by high-resolution description of $Pseudomonas\ Aeruginosa$ saltovirus integration sites Gilles Vergnaud , Cédric Midoux , Yann Blouin , Maria Bourkaltseva , Victor Krylov Viruses, 2018, 10 (5), pp.245. ⟨10.3390/v10050245⟩ Article dans une revue hal-02184815v1
	A carrier state is established in Pseudomonas aeruginosa by phage LeviOr01, a newly isolated ssRNA levivirus Christine Pourcel , Cédric Midoux , Gilles Vergnaud , Libera Latino Journal of General Virology, 2017, 98 (8), pp.2181 - 2189. ⟨10.1099/jgv.0.000883⟩ Article dans une revue hal-01879191v1
	Large Preferred Region for Packaging of Bacterial DNA by phiC725A, a Novel Pseudomonas aeruginosa F116-Like Bacteriophage Christine Pourcel , Cédric Midoux , Yolande Hauck , Gilles Vergnaud , Libera Latino PLoS ONE, 2017, 12 (1), pp.e0169684. ⟨10.1371/journal.pone.0169684⟩ Article dans une revue hal-01879155v1
	Complete Genome Sequence of PM105, a New Pseudomonas aeruginosa B3-Like Transposable Phage. Christine Pourcel , Cédric Midoux , Maria Bourkaltseva , Elena Pleteneva , Victor Krylov Genome Announcements, 2016, 4 (2), pp.e01543-15. ⟨10.1128/genomeA.01543-15⟩ Article dans une revue hal-01443828v1
	Complete Genome Sequences of Pseudomonas aeruginosa Phages vB_PaeP_PcyII-10_P3P1 and vB_PaeM_PcyII-10_PII10A. Christine Pourcel , Cédric Midoux , Libera Latino , Marie-Agnès Petit , Gilles Vergnaud Genome Announcements, 2016, 4 (6), pp.e00916-16. ⟨10.1128/genomeA.00916-16⟩ Article dans une revue hal-01439325v1
	Pseudolysogeny and sequential mutations build multiresistance to virulent bacteriophages in Pseudomonas aeruginosa Libera Latino , Cédric Midoux , Yolande Hauck , Gilles Vergnaud , Christine Pourcel Microbiology, 2016, ⟨10.1099/mic.0.000263⟩ Article dans une revue hal-01280758v1
	Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d'Ivoire. Christiane Essoh , Libera Latino , Cédric Midoux , Yann Blouin , Guillaume Loukou PLoS ONE, 2015, 10 (6), pp.e0130548. ⟨10.1371/journal.pone.0130548⟩ Article dans une revue hal-01188392v1
	Interpretation and approximation tools for big, dense Markov chain transition matrices in population genetics. Katja Reichel , Valentin Bahier , Cédric Midoux , Nicolas Parisey , Jean-Pierre Masson Algorithms for Molecular Biology, 2015, 10 (1), pp.31. ⟨10.1186/s13015-015-0061-5⟩ Article dans une revue hal-01286505v1

	Easy16S: a user-friendly Shiny web-service for exploration and visualization of microbiome Cédric Midoux , Mahendra Mariadassou 2023, ⟨swh:1:dir:1828e5d3e367f8dbb972a1dc6684fc4aebe04825⟩ Logiciel hal-04304559v1

	Easy16S : a user-friendly Shiny web-service for exploration and visualization of microbiome data. Cédric Midoux Journées NEM, INRAE, Apr 2024, Paris, France Communication dans un congrès hal-04549290v1
	Packages R pour contrôler son travail et ainsi mieux optimiser, réutiliser et communiquer autour de ses analyses Cédric Midoux , Philippe Ruiz Journées du PEPI IBIS, PEPI IBIS, Sep 2023, Paris, France Communication dans un congrès hal-04229825v1
	Développer ses applications et partager ses résultats avec R et GitLab Cédric Midoux Café des sciences, BioSP - INRAE, Feb 2022, Avignon (FR), France Communication dans un congrès hal-04249221v1
	Implementation of a Nanopore metagenomic workflow for time-series of complex microbial communities: MAG catalog and functional annotation Cédric Midoux , Chrystelle Bureau , Baptiste Quentin , Olivier Chapleur Journée thématique du PEPI IBIS - Métagénomique, PEPI IBIS, Nov 2022, Dijon, France Communication dans un congrès hal-04229643v1
	Diversity of novel viruses infecting methanogenic archaea, discovered through coupling of stable isotope probing and metagenomics Hoang Ngo , François Enault , Cédric Midoux , Mahendra Mariadassou , Olivier Chapleur Phages in Paris, Phages.fr, Oct 2022, Paris, France Communication dans un congrès hal-04357012v1
	Characterization of virus-host dynamics in anaerobic digesters under abiotic stress Marion Coves , Laurent Mazéas , Olivier Chapleur , Cédric Midoux , Ludwig E Jardillier 17e Congrès National de la Société Française de Microbiologie, Société Française de Microbiologie, Oct 2022, Montpellier, France Communication dans un congrès hal-04356630v1
	Co-digestion anaérobie de boues urbaines : effets du fumier et de la fraction organique des déchets ménagers employés comme cosubstrats, sur la composition des communautés microbienne Ariane Bize , Sabrina Guérin-Rechdaoui , Franciele Pereira Camargo , Vincent Rocher , Elise Alibert 25ème édition des Journées Information Eaux (JIE), Oct 2022, Poitiera, France Communication dans un congrès hal-04493115v1
	Transcriptomic and proteomic response of a Liquorilactobacillus mali strain from cider to a lytic phage infection Pierre Ledormand , Nathalie Desmasures , Benoit Bernay , Olivier Rué , Cédric Midoux Société Francaise Microbiologie, 2021, Nantes, France Communication dans un congrès hal-03896401v1
	K-mer approaches provide valuable insight into mobilome evolution in the domain Archaea Ariane Bize , Violette Da Cunha , Cédric Midoux , Sophie Schbath , Patrick Forterre Viruses of Microbes 2018, Jul 2018, Wroclaw, Poland Communication dans un congrès hal-04360247v1
	K-mer approaches provide valuable insight into mobilome evolution in the domain Archaea Ariane Bize , Violette Da Cunha , Cédric Midoux , Sophie Schbath , Patrick Forterre Phages in Bordeaux, Phages.fr, Sep 2018, Bordeaux, France Communication dans un congrès hal-04360213v1

	Bacteriophages infecting surface bacteria from a smear-ripened cheese are persistent and contaminate the dairy plant Thomas Paillet , Julien Lossouarn , Clarisse Figueroa , Inès Pedros , Cédric Midoux Viruses of Microbes (VoM) 2022, Jul 2022, Guimarães, Portugal Poster de conférence hal-04416527v1
	Plateforme bioinformatique MIGALE Mouhamadou Ba , Hélène Chiapello , Christelle Hennequet-Antier , Valentin Loux , Mahendra Mariadassou Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2022, Rennes, France. 2022 Poster de conférence hal-04176761v1
	Implementation of a Nanopore metagenomic workflow for time-series of complex microbial communities: MAG catalog and functional annotation. Cédric Midoux , Chrystelle Bureau , Baptiste Quentin , Olivier Chapleur MICROBES symposium, Sep 2022, Orsay, France. Poster de conférence hal-03765009v1
	Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics Vuong Quoc Hoang Ngo , François Enault , Cédric Midoux , Mahendra Mariadassou , Olivier Chapleur ISME18, 18th International Symposium on Microbial Ecology, Aug 2022, Lausanne, Switzerland. Poster de conférence hal-04359643v1
	Characterization of virus-host dynamics in anaerobic digesters under abiotic stress Marion Coves , Laurent Mazéas , Olivier Chapleur , Cédric Midoux , Ludwig E Jardillier Viruses of Microbes, Jul 2022, Braga, Portugal. Poster de conférence hal-04356367v1
	Le cidre est une matrice délicate pour l’étude des bactériophages et des phageomes. Pierre Ledormand , Nathalie Desmasures , Céline Caillard , Erwan Renard , Didier Goux Société Française de Microbiologie 2022, 2022, Nantes, France Poster de conférence hal-03896438v1
	Bacteriophage ecology of cider, an alcoholic fermented beverage: phages, are you there? Pierre Ledormand , Nathalie Desmasures , Didier Goux , Cédric Midoux , Olivier Rué LAB symposium, 2021, Egmond aan Zee, Netherlands Poster de conférence hal-03896414v1
	A bioinformatic pipeline to elucidate the links between viruses and their hosts in microbial communities, applied to viruses in anaerobic digestion processes Vuong Quoc Hoang Ngo , Cédric Midoux , Mahendra Mariadassou , Valentin Loux , François Enault JOBIM 2021 (JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques), Jul 2021, Paris, France. Poster de conférence hal-04359920v1
	New virulent bacteriophages isolated from the surface of Epoisses cheese infect ripening bacteria Thomas Paillet , Julien Lossouarn , Inès Pedros , Cédric Midoux , Olivier Rué Sixth symposium of the French PHAGE Network, Oct 2021, Roscoff, France Poster de conférence hal-03441698v1
	Plateforme bioinformatique MIGALE Mouhamadou Ba , Hélène Chiapello , Christelle Hennequet-Antier , Valentin Loux , Mahendra Mariadassou Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2021, Paris, France. 2021 Poster de conférence hal-04176768v1
	Plateforme bioinformatique MIGALE Mouhamadou Ba , Damien Berry , David Christiany , Hélène Chiapello , Olivier Inizan Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2020, Montpellier, France. 2020 Poster de conférence hal-04176782v1
	Chemometric analysis of a metagenomic dataset to decipher the functional role of the micrpbiota from anaerobic digesters F. Puig-Castellví , C. Midoux , Laëtitia Cardona , O. Chapleur , D. Conteau Chimiométrie 2020, Jan 2020, Liège, Belgium Poster de conférence hal-04231788v1
	DeepOmics, a Digital Environmental Engineering Platform for meta-omics data Ariane Bize , Guillaume Perréal , Aurélie Gramusset , Marion Predhumeau , Cédric Midoux Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM2020), Jun 2020, Montpellier, France. Poster de conférence hal-04493150v1
	A shotgun metagenomics analysis applied to the ecological engineering of anaerobic microbial communities for the production of hydrogen from Citrus Peel Waste Cedric Midoux , Franciele Camargo , Olivier Rué , Mahendra Mariadassou , Valentin Loux JOBIM, Jun 2020, Montpellier, France Poster de conférence hal-02902758v1
	Plateforme bioinformatique MIGALE Hélène Chiapello , Sandra Dérozier , Olivier Inizan , Mahendra Mariadassou , Véronique Martin Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2019, Nantes, France. 2019 Poster de conférence hal-04176805v1
	Detection of an archaeal-specific viral family, previously thought to infect exclusively hyperthermophiles, in human gut metaviromes Vuong Quoc Hoang Ngo , Cédric Midoux , Olivier Rué , Mahendra Mariadassou , Violette Da Cunha Phages in Grenoble, Oct 2019, Grenoble, France. Poster de conférence hal-04360160v1
	Mining anaerobic digestion data with Deep-omics, a new digital environmental engineering platform for omics data Cédric Midoux , Guillaume Perréal , Marion Predhumeau , Olivier Rué , Yannick Fayolle AD16 (16th IWA World Conference on Anaerobic Digestion), Jun 2019, Delft, Netherlands Poster de conférence hal-04361137v1
	Feedback on a c omparative metatranscriptomic analysis Cedric Midoux , Tiago P. Delforno , Thais Z. Macedo , Gileno V. Lacerda , Olivier Rué JOBIM 2019 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. , 2019, JOBIM 2019 Poster de conférence hal-02735859v1
	Easy16S : a user-friendly Shiny interface for analysis and visualization of metagenomic data Cedric Midoux , Olivier Rué , Olivier Chapleur , Mahendra Mariadassou , Théodore Bouchez JOBIM 2018 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. , 2018, JOBIM 2018 Poster de conférence hal-02737257v1

Cédric Midoux

Publications

Study of a Pilot Scale Microbial Electrosynthesis Reactor for Organic Waste Biorefinery

The electrochemical microbial tree: A new concept for wastewater treatment

Impacts of disinfected wastewater irrigation on soil characteristics, microbial community composition, and crop yield

Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics

Investigation of the Phageome and Prophages in French Cider, a Fermented Beverage

Metataxonomics, metagenomics, metabolomics analysis of the influence of temperature modification in full-scale anaerobic digesters

Virulent Phages Isolated from a Smear-Ripened Cheese Are Also Detected in Reservoirs of the Cheese Factory

Methane production and microbial community acclimation of five manure inocula during psychrophilic anaerobic digestion of swine manure

Mining the equine gut metagenome: poorly-characterized taxa associated with cardiovascular fitness in endurance athletes

A longitudinal study of the effect of temperature modification in full-scale anaerobic digesters – dataset combining 16S rDNA gene sequencing, metagenomics, and metabolomics data

Molecular approaches to uncover phage-lactic acid bacteria interactions in a model community simulating fermented beverages

Microbial and functional characterization of granulated sludge from full-scale UASB thermophilic reactor applied to sugarcane vinasse treatment

Microbial and functional characterization of an allochthonous consortium applied to hydrogen production from Citrus Peel Waste in batch reactor in optimized conditions

Oxygen-reducing bidirectional microbial electrodes designed in real domestic wastewater

Electrochemical analysis of a microbial electrochemical snorkel in laboratory and constructed wetlands

Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions

Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history

Denitrifying bio-cathodes developed from constructed wetland sediments exhibit electroactive nitrate reducing biofilms dominated by the genera Azoarcus and Pontibacter

Assessing the quality of fresh Whitemouth croaker (Micropogonias furnieri) meat based on micro‐organism and histamine analysis using NGS, qPCR and HPLC‐DAD

Taxon appearance from extraction and amplification steps demonstrates the value of multiple controls in tick microbiome analysis

Integrating independent microbial studies to build predictive models of anaerobic digestion inhibition by ammonia and phenol

The Basis for Natural Multiresistance to Phage in Pseudomonas aeruginosa

Investigation of $Pseudomonas\ aeruginosa$ strain PcyII-10 variants resisting infection by N4-like phage Ab09 in search for genes involved in phage adsorption

Comparative metatranscriptomic analysis of anaerobic digesters treating anionic surfactant contaminated wastewater

Transposition behavior revealed by high-resolution description of $Pseudomonas\ Aeruginosa$ saltovirus integration sites

A carrier state is established in Pseudomonas aeruginosa by phage LeviOr01, a newly isolated ssRNA levivirus

Large Preferred Region for Packaging of Bacterial DNA by phiC725A, a Novel Pseudomonas aeruginosa F116-Like Bacteriophage

Complete Genome Sequence of PM105, a New Pseudomonas aeruginosa B3-Like Transposable Phage.

Complete Genome Sequences of Pseudomonas aeruginosa Phages vB_PaeP_PcyII-10_P3P1 and vB_PaeM_PcyII-10_PII10A.

Pseudolysogeny and sequential mutations build multiresistance to virulent bacteriophages in Pseudomonas aeruginosa

Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d'Ivoire.

Interpretation and approximation tools for big, dense Markov chain transition matrices in population genetics.

Easy16S: a user-friendly Shiny web-service for exploration and visualization of microbiome

Easy16S : a user-friendly Shiny web-service for exploration and visualization of microbiome data.

Packages R pour contrôler son travail et ainsi mieux optimiser, réutiliser et communiquer autour de ses analyses

Développer ses applications et partager ses résultats avec R et GitLab

Implementation of a Nanopore metagenomic workflow for time-series of complex microbial communities: MAG catalog and functional annotation

Diversity of novel viruses infecting methanogenic archaea, discovered through coupling of stable isotope probing and metagenomics

Characterization of virus-host dynamics in anaerobic digesters under abiotic stress

Co-digestion anaérobie de boues urbaines : effets du fumier et de la fraction organique des déchets ménagers employés comme cosubstrats, sur la composition des communautés microbienne

Transcriptomic and proteomic response of a Liquorilactobacillus mali strain from cider to a lytic phage infection

K-mer approaches provide valuable insight into mobilome evolution in the domain Archaea

K-mer approaches provide valuable insight into mobilome evolution in the domain Archaea

Bacteriophages infecting surface bacteria from a smear-ripened cheese are persistent and contaminate the dairy plant

Plateforme bioinformatique MIGALE

Implementation of a Nanopore metagenomic workflow for time-series of complex microbial communities: MAG catalog and functional annotation.

Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics

Characterization of virus-host dynamics in anaerobic digesters under abiotic stress

Le cidre est une matrice délicate pour l’étude des bactériophages et des phageomes.

Bacteriophage ecology of cider, an alcoholic fermented beverage: phages, are you there?

A bioinformatic pipeline to elucidate the links between viruses and their hosts in microbial communities, applied to viruses in anaerobic digestion processes

New virulent bacteriophages isolated from the surface of Epoisses cheese infect ripening bacteria

Plateforme bioinformatique MIGALE

Plateforme bioinformatique MIGALE

Chemometric analysis of a metagenomic dataset to decipher the functional role of the micrpbiota from anaerobic digesters

DeepOmics, a Digital Environmental Engineering Platform for meta-omics data

A shotgun metagenomics analysis applied to the ecological engineering of anaerobic microbial communities for the production of hydrogen from Citrus Peel Waste

Plateforme bioinformatique MIGALE

Detection of an archaeal-specific viral family, previously thought to infect exclusively hyperthermophiles, in human gut metaviromes

Mining anaerobic digestion data with Deep-omics, a new digital environmental engineering platform for omics data

Feedback on a c omparative metatranscriptomic analysis

Easy16S : a user-friendly Shiny interface for analysis and visualization of metagenomic data