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Uptake of fatty acids by the enterocyte: the role of intracellular metabolism

 Julie Etienne , Armelle Penhoat , Marie-Caroline Michalski , Carole Knibbe
12th European Conference on Mathematical and Theoretical Biology, Sep 2022, Heidelberg, France
Poster de conférence hal-03921859v1
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Aevol-4b: Toward a new simulation platform to benchmark phylogenetic tools

 Nicolas Comte , Vincent Liard , Carole Knibbe , Guillaume Beslon
ALPHY (ALignments and PHYlogeny), Feb 2017, Villeurbanne, France
Communication dans un congrès hal-01569078v1

In vitro oxidized HDL and HDL from type 2 diabetes patients have reduced ability to efflux oxysterols from THP-1 macrophages

 Yinan Chen , Maud Arnal-Levron , Françoise Hullin-Matsuda , Carole Knibbe , Philippe Moulin , et al.
Biochimie, 2018, 153, pp.232-237. ⟨10.1016/j.biochi.2018.04.018⟩
Article dans une revue hal-01952968v1

Evolutionary influence of the protein network topology on gene organisation in artificial organisms

 C. Knibbe , G. Beslon , J.M. Fayard
European Conference on Complex System (ECCS 2005), 2005, Paris (France), 2005, France. pp.1-1
Communication dans un congrès hal-00391436v1

An alife game to teach evolution of antibiotic resistance

 Guillaume Beslon , Bérénice Batut , David P. Parsons , Dominique Schneider , Carole Knibbe
ECAL - 12th European Conference on Artificial Life - 2013, Sep 2013, Taormina, Italy. pp.43-50
Communication dans un congrès hal-00849345v1
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Introduction to the ECAL 2017 Special Issue

 Carole Knibbe , Guillaume Beslon , Dusan Misevic
Artificial Life, 2019, 25 (4), pp.313-314. ⟨10.1162/artl_a_00298⟩
Article dans une revue hal-02428658v1

Scaling Laws in Digital Organisms

 Guillaume Beslon , Yolanda Sanchez-Dehesa , David P. Parsons , Jose Maria Pena , Carole Knibbe
Proc. Information Processing in Cells and Tissues IPCAT'09, Apr 2009, Ascona, Switzerland. pp.111-114
Communication dans un congrès hal-01437632v1

Impact of vegetable lecithin on lipid metabolism and the bioavailability of alpha-linolenic acid in rodents

 Chloé Robert , Charline Buisson , Leslie Couedelo , Carole Knibbe , Emmanuelle Meugnier , et al.
Journal of the American Oil Chemists' Society, 2020, 97, pp.66-66
Article dans une revue hal-03531978v1

L'évolution expérimentale in silico

 Carole Knibbe
Franck Varenne and Marc Silberstein. Modéliser et simuler - Epistémologies et pratiques de la modélisation et de la simulation - Tome 1, 1, Editions Matériologiques, pp.581-610, 2013, Sciences et Philosophie, 978-2-919694-19-8
Chapitre d'ouvrage hal-00850175v1

Evolutionary coupling between the deleteriousness of gene mutations and the amount of non-coding sequences

 C. Knibbe , O. Mazet , F. Chaudier , J.M. Fayard , G. Beslon
Journal of Theoretical Biology, 2007, 244 (4), pp.621-630
Article dans une revue hal-00391449v1
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Structuration des génomes par sélection indirecte de la variabilité mutationnelle : une approche de modélisation et de simulation

 Carole Knibbe
Modélisation et simulation. INSA de Lyon, 2006. Français. ⟨NNT : ⟩
Thèse tel-00482375v1

Designing artificial organisms to study the influence of gene pleitropy on genome evolution

 C. Knibbe , G. Beslon , F. Chaudier , J.M. Fayard
8th European Conference on Artificial Life (ECAL 2005), 2005, Canterbury (Royaume-Uni), 2005, France. pp.1-1
Communication dans un congrès hal-00391344v1

Effect of bottlenecks on genome size: investigations by digital genetics

 Gaël Kaneko , Carole Knibbe , Guillaume Beslon
Integrative Post-Genomics, Nov 2007, Lyon, France
Communication dans un congrès hal-01596355v1
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In silico experimental evolution: a tool to test evolutionary scenarios

 Bérénice Batut , David P. Parsons , Stephan Fischer , Guillaume Beslon , Carole Knibbe
BMC Bioinformatics, 2013, 14 (Suppl 15), pp.S11
Article dans une revue hal-00873232v1
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Homogeneous triacylglycerol tracers have an impact on the thermal and structural properties of dietary fat and its lipolysis rate under simulated physiological conditions

 Sabine Danthine , Cécile Vors , Damien Agopian , Annie Durand , Romain Guyon , et al.
Chemistry and Physics of Lipids, 2019, 225, ⟨10.1016/j.chemphyslip.2019.104815⟩
Article dans une revue hal-02326893v1

Le trafic des triglycérides au travers de l’entérocyte : une vision mosaïque pour la modélisation mathématique

 Julie Etienne , Armelle Penhoat , Hugues Berry , Marie-Caroline Michalski , Carole Knibbe
JFN 2020 - Journées Francophones de Nutrition, Nov 2020, En ligne, France
Poster de conférence hal-03149846v1
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Phenotypic Noise and the Cost of Complexity

 Charles Rocabert , Guillaume Beslon , Carole Knibbe , Samuel Bernard
EvoLyon 2019, Nov 2019, Lyon, France
Poster de conférence hal-02402443v1

Long-term needs for evolvability and robustness shape genome structure: a simulation study

 C. Knibbe , G. Beslon , J.M. Fayard
Journées Ouvertes Biologie Informatique Mathématiques (JOBIM), 2006, Bordeaux (France), 2006, France. pp.1-1
Communication dans un congrès hal-00391437v1

The topology of the protein network influences the dynamics of gene order: from systems biology to a systemic understanding of evolution

 C. Knibbe , J.M. Fayard , Guillaume Beslon
Artificial Life, 2008, 14 (1), pp.149-156. ⟨10.1162/artl.2008.14.1.149⟩
Article dans une revue hal-00391448v1
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In silico experimental evolution provides independent and challenging benchmarks for comparative genomics

 Priscila Biller , Eric Tannier , Guillaume Beslon , Carole Knibbe
Journées ouvertes Biologie Informatique Mathématiques, Jun 2016, Lyon, France. pp.79-82
Communication dans un congrès hal-01375657v1
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Souvenirs from ECAL 2017: create, play, experiment, discover – revealing the experimental power of virtual worlds

 Carole Knibbe
Adaptive Behavior, 2018, 26 (1), pp.37-40
Article dans une revue hal-01952933v1

Homologous and Nonhomologous Rearrangements: Interactions and Effects on Evolvability.

 David P. Parsons , Carole Knibbe , Guillaume Beslon
Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems (ECAL 11), Aug 2011, Paris, France. pp.622--629
Communication dans un congrès hal-00696902v1

Scaling Laws in Bacterial Genomes: A Side-Effect of Selection of Mutational Robustness

 Guillaume Beslon , David P. Parsons , Yolanda Sanchez-Dehesa , Jose-Maria Peña , Carole Knibbe
BioSystems, 2010, 102 (1), pp.32-40. ⟨10.1016/j.biosystems.2010.07.009⟩
Article dans une revue inria-00593709v1

A mathematical model for the uptake of fatty acids by the enterocyte

 Julie Etienne , Armelle Penhoat , Marie-Caroline Michalski , Carole Knibbe
EDISS 205 2021 - Journée de l'Ecole Doctorale Interdisciplinaire Sciences-Santé, Nov 2021, Online, France
Poster de conférence hal-03485600v1

Homogeneous triacylglycerol tracers can impact fat crystallization and its lipolysis rate under simulated physiological conditions

 Sabine Danthine , Cécile Vors , Annie Durand , Frédéric Carrière , Carole Knibbe , et al.
Virtual 2020 AOCS Annual Meeting and Expo, Jun 2020, Montréal, Canada
Poster de conférence hal-02917715v1

Petits bricolages en évolution

 Guillaume Beslon , Sara Franceschelli , Carole Knibbe
"Génies de la Bricole et du Bricolage", colloque en hommage à Claude Levy-Strauss, Nov 2008, Lyon, France
Communication dans un congrès hal-01614309v1
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Forward‐in‐time simulation of chromosomal rearrangements: The invisible backbone that sustains long‐term adaptation

 Paul Banse , Juliette Luiselli , David P Parsons , Théotime Grohens , Marco Foley , et al.
Molecular Ecology, 2023, ⟨10.1111/mec.17234⟩
Article dans une revue hal-04350147v1
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In Silico Experimental Evolution Highlights the Influence of Environmental Seasonality on Bacterial Diversification

 Charles Rocabert , Carole Knibbe , Jessika Consuegra , Dominique Schneider , Guillaume Beslon
2nd EvoEvo Workshop, satellite workshop of CCS2016, Sep 2016, Amsterdam, Netherlands
Communication dans un congrès hal-01375677v1
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Beware batch culture: Seasonality and niche construction predicted to favor bacterial adaptive diversification

 Charles Rocabert , Carole Knibbe , Jessika Consuegra , Dominique Schneider , Guillaume Beslon
PLoS Computational Biology, 2017, 13 (3), e1005459 (32 p.). ⟨10.1371/journal.pcbi.1005459.s006⟩
Article dans une revue hal-01508751v1

Amount of non-coding sequences depends on mutation rate

 C. Knibbe , A. Coulon , O. Mazet , J.M. Fayard , G. Beslon
10th Evolutionary Biology Meeting, 2006, Marseille (France), 2006, France. pp.1-1
Communication dans un congrès hal-00391446v1
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