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De novo assembling 19 maize inbred lines of the European germplasm

 Carole Iampietro , Camille Eché , Clement Birbes , Andreea Dreau , Erwan Denis , et al.
63rd Annual Maize Genetics Meeting, Mar 2021, virtuel, United States
Poster de conférence hal-03539396v1
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Comparison of the PacBio 2.0 and 3.0 kits for full length mRNA sequencing in multiplex

 Marine Sallaberry , Eden Darnige , Lucien Hoffbeck , Sandra Fourre , Mathis Pochon , et al.
Assemblée Générale France Génomique, Jun 2023, Paris, France
Poster de conférence hal-04150252v1
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A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas)

 Mateus Adolfi , Kang Du , Susanne Kneitz , Cédric Cabau , Margot Zahm , et al.
Scientific Reports, 2021, 11 (1), pp.21544. ⟨10.1038/s41598-021-01066-z⟩
Article dans une revue hal-03521507v1
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Strengths and limits of long read metabarcoding

 Jean Mainguy , Adrien Castinel , Olivier Bouchez , Sylvie Combes , Carole Iampietro , et al.
ECCB 2022, Sep 2022, Meliá Sitges, Spain
Poster de conférence hal-03848228v1
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DNA isolation from cattle semen for long read sequencing v1

 Erwan Denis , Cécile Grohs , Carole Iampietro
2024, ⟨10.17504/protocols.io.j8nlkw1qwl5r/v1⟩
Autre publication scientifique hal-04414012v1
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A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling

 Camille Eché , Carole Iampietro , Clément Birbes , Andreea Dréau , Claire Kuchly , et al.
Scientific Data , 2023, 10 (1), pp.369. ⟨10.1038/s41597-023-02249-1⟩
Article dans une revue hal-04122201v1
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Presentation de la Plateforme de séquençage GeT-PlaGe

 Carole Iampietro
Maitrise. France. 2021, pp.1-70
Cours hal-03690829v1
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Identification of genomic regions for high-resolution taxonomic profiling using long-read sequencing technology

 Jean Mainguy , Olivier Bouchez , Adrien Castinel , Sylvie Combes , Christine Gaspin , et al.
JOBIM : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2019, Nantes, France. , 2019
Poster de conférence hal-02791605v1
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De novo assembly of bovine genome using PacBio applications

 Camille Eché , Clément Birbes , Carole Iampietro , Andreea Dréau , Claire Kuchly , et al.
SMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands
Poster de conférence hal-03541224v1
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Implementation of new methods for metagenomics analysis using PacBio HiFi sequencing

 Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin , et al.
Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States
Poster de conférence hal-03541346v1
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Structural variants detection and de novo genome assembly of a maize line

 Carole Iampietro , Camille Eché , Clément Birbes , Arnaud Di Franco , Andreea Dréau , et al.
Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States
Poster de conférence hal-03541379v1
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The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

 Kang Du , Matthias Stöck , Susanne Kneitz , Christophe C. Klopp , Joost Woltering , et al.
Nature Ecology & Evolution, 2020, 4 (6), pp.841-852. ⟨10.1038/s41559-020-1166-x⟩
Article dans une revue hal-02640938v1
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Generation of a chromosome‐level genome assembly for Pacific halibut ( Hippoglossus stenolepis ) and characterization of its sex‐determining genomic region

 Andrew J. Jasonowicz , Anna Simeon , Margot Zahm , Cédric Cabau , Christophe C. Klopp , et al.
Molecular Ecology Resources, 2022, pp.1-16. ⟨10.1111/1755-0998.13641⟩
Article dans une revue hal-03737450v1

metagWGS : a workflow to analyse short or long HiFi metagenomic reads

 Joanna Fourquet , Maïna Vienne , Jean Mainguy , Vincent Darbot , Pierre Martin , et al.
Bioinfo Biosta Genotoul day, Dec 2022, Castanet Tolosan, France
Communication dans un congrès hal-03944382v1
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Improving microbial taxonomic profiling with long read technologies

 Jean Mainguy , Adrien Castinel , Olivier Bouchez , Sylvie Combes , Carole Iampietro , et al.
JOBIM2020, Jun 2020, Montpellier (virtuel), France
Poster de conférence hal-03177058v1
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A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling

 Camille Eché , Carole Iampietro , Clément Birbes , Andreea Dréau , Claire Kuchly , et al.
Plant and Genome San Diego 2024, Jan 2024, San Diego (California), United States. 10, 2024
Poster de conférence hal-04432803v1
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The Hi-C method

 Carole Iampietro , Christophe C. Klopp , Alain Pinton
2022
Vidéo hal-03690622v1
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A reference genome of Solanum habrochaites

 Bernard Caromel , Jacques Lagnel , Carole Iampietro , Marie-Claire Le Coant , Marine Sallaberry , et al.
XVII SOLANACEAE2022 International Conference on the Plant Family of Solanaceae, Nov 2022, THESSALONIKI, Greece
Poster de conférence hal-04136943v1
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Benefits of PacBio HiFi long reads for metagenomic whole genome analysis

 Adrien Castinel , Jean Mainguy , Olivier Bouchez , Sylvie Combes , Carole Iampietro , et al.
Environmental And Agronomical Genomics Symposium, Oct 2021, Tours, France
Poster de conférence hal-03538657v1
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metagWGS: a workflow to analyse short and long HiFi metagenomic reads Taxonomic profile HiFi vs Short reads assembly

 Joanna Fourquet , Jean Mainguy , Maïna Vienne , Céline Noirot , Pierre Martin , et al.
JOBIM 2022, Jul 2022, Rennes, France. Actes des exposés (keynotes, contributions orales, mini-symposia) : JOBIM2022_proceedings_oral.pdf (23 Mo) et actes des posters et démos : JOBIM2022_proceedings_posters_demos.pdf (19 Mo). ⟨10.15454/1.5572369328961167E12⟩
Poster de conférence hal-03771202v1
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Major contribution to the bovine pangenome: whole genome sequences, SNPs, and structural variants of 154 bulls from 14 breeds

 Amandine Suin , Camille Marcuzzo , Camille Eché , Andreea Dréau , Clément Birbes , et al.
Plant and Genome San Diego 2024, Jan 2024, San Diego, United States
Poster de conférence hal-04432840v1
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An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

 Ming Wen , Qiaowei Pan , Elodie Jouanno , Jérôme Montfort , Margot Zahm , et al.
Molecular Ecology Resources, 2022, pp.1-18. ⟨10.1111/1755-0998.13620⟩
Article dans une revue hal-03652234v1
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Structural variants detection and de novo genome assembly of a Maize line

 Camille Eché , Clement Birbes , Carole Iampietro , Arnaud Di Franco , Andreea Dreau , et al.
SMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands
Poster de conférence hal-03541316v1
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The benefits of long read HiFi sequencing for metabarcoding analysis

 Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin , et al.
PACBIO DISCOVERIES ROADSHOW PARIS, PACBIO, May 2022, Paris, France
Communication dans un congrès hal-03740586v1
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Innovations dans le domaine de la génomique. Exemple du projet SeqOccIn.

 Carole Iampietro
Rencontres france futur élevage, France Futur Élevage, May 2023, Paris, France
Communication dans un congrès hal-04122256v1
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metagWGS: a workflow to analyse short and long HiFi metagenomic reads

 Joanna Fourquet , Maïna Vienne , Jean Mainguy , Vincent Darbot , Pierre Martin , et al.
ECCB2022, Sep 2022, Sitges, Spain
Poster de conférence hal-03788263v1
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Large-scale detection and characterization of interchromosomal rearrangements in normozoospermic bulls using massive genotype and phenotype data sets

 Jeanlin Jourdain , Harmonie Barasc , Thomas Faraut , Anne Calgaro , Nathalie Bonnet , et al.
Genome Research, 2023, 33 (6), pp.957-971. ⟨10.1101/gr.277787.123⟩
Article dans une revue hal-04170739v1
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A dual role of dLsd1 in oogenesis: regulating developmental genes and repressing transposons

 Julie M J Lepesant , Carole Iampietro , Eugenia Galeota , Benoit Augé , Marion Aguirrebengoa , et al.
Nucleic Acids Research, 2020, 38 (3), pp.1206-1224. ⟨10.1093/nar/gkz1142⟩
Article dans une revue hal-02395290v1
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Transgenerational epigenetics in quail: whole genome DNA methylation analysis

 Chloé Cerutti , Sophie Leroux , Paul Terzian , Joanna Lledo , David Gourichon , et al.
Epigenetic Inheritance: Impact for Biology and Society, Aug 2023, Zurich, Switzerland
Poster de conférence hal-04212971v1
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Genome structures resolve the early diversification of teleost fishes

 Elise Parey , Alexandra Louis , Jérôme Montfort , Olivier Bouchez , Céline Roques , et al.
Science, 2023, 379 (6632), pp.572-575. ⟨10.1101/2022.04.07.487469⟩
Article dans une revue hal-03765882v1
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