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De novo assembling 19 maize inbred lines of the European germplasm
Carole Iampietro
,
Camille Eché
,
Clement Birbes
,
Andreea Dreau
,
Erwan Denis
,
et al.
63rd Annual Maize Genetics Meeting, Mar 2021, virtuel, United States
Poster de conférence
hal-03539396v1
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Comparison of the PacBio 2.0 and 3.0 kits for full length mRNA sequencing in multiplex
Marine Sallaberry
,
Eden Darnige
,
Lucien Hoffbeck
,
Sandra Fourre
,
Mathis Pochon
,
et al.
Assemblée Générale France Génomique, Jun 2023, Paris, France
Poster de conférence
hal-04150252v1
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A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas)
Mateus Adolfi
,
Kang Du
,
Susanne Kneitz
,
Cédric Cabau
,
Margot Zahm
,
et al.
Article dans une revue
hal-03521507v1
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Strengths and limits of long read metabarcoding
Jean Mainguy
,
Adrien Castinel
,
Olivier Bouchez
,
Sylvie Combes
,
Carole Iampietro
,
et al.
ECCB 2022, Sep 2022, Meliá Sitges, Spain
Poster de conférence
hal-03848228v1
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DNA isolation from cattle semen for long read sequencing v1
Erwan Denis
,
Cécile Grohs
,
Carole Iampietro
Autre publication scientifique
hal-04414012v1
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A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling
Camille Eché
,
Carole Iampietro
,
Clément Birbes
,
Andreea Dréau
,
Claire Kuchly
,
et al.
Article dans une revue
hal-04122201v1
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Presentation de la Plateforme de séquençage GeT-PlaGe
Carole Iampietro
Maitrise. France. 2021, pp.1-70
Cours
hal-03690829v1
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Identification of genomic regions for high-resolution taxonomic profiling using long-read sequencing technology
Jean Mainguy
,
Olivier Bouchez
,
Adrien Castinel
,
Sylvie Combes
,
Christine Gaspin
,
et al.
JOBIM : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2019, Nantes, France. , 2019
Poster de conférence
hal-02791605v1
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De novo assembly of bovine genome using PacBio applications
Camille Eché
,
Clément Birbes
,
Carole Iampietro
,
Andreea Dréau
,
Claire Kuchly
,
et al.
SMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands
Poster de conférence
hal-03541224v1
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Implementation of new methods for metagenomics analysis using PacBio HiFi sequencing
Adrien Castinel
,
Jean Mainguy
,
Sylvie Combes
,
Carole Iampietro
,
Christine Gaspin
,
et al.
Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States
Poster de conférence
hal-03541346v1
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Structural variants detection and de novo genome assembly of a maize line
Carole Iampietro
,
Camille Eché
,
Clément Birbes
,
Arnaud Di Franco
,
Andreea Dréau
,
et al.
Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States
Poster de conférence
hal-03541379v1
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The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization
Kang Du
,
Matthias Stöck
,
Susanne Kneitz
,
Christophe C. Klopp
,
Joost Woltering
,
et al.
Article dans une revue
hal-02640938v1
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Generation of a chromosome‐level genome assembly for Pacific halibut ( Hippoglossus stenolepis ) and characterization of its sex‐determining genomic region
Andrew J. Jasonowicz
,
Anna Simeon
,
Margot Zahm
,
Cédric Cabau
,
Christophe C. Klopp
,
et al.
Article dans une revue
hal-03737450v1
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metagWGS : a workflow to analyse short or long HiFi metagenomic reads
Joanna Fourquet
,
Maïna Vienne
,
Jean Mainguy
,
Vincent Darbot
,
Pierre Martin
,
et al.
Bioinfo Biosta Genotoul day, Dec 2022, Castanet Tolosan, France
Communication dans un congrès
hal-03944382v1
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Improving microbial taxonomic profiling with long read technologies
Jean Mainguy
,
Adrien Castinel
,
Olivier Bouchez
,
Sylvie Combes
,
Carole Iampietro
,
et al.
JOBIM2020, Jun 2020, Montpellier (virtuel), France
Poster de conférence
hal-03177058v1
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A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling
Camille Eché
,
Carole Iampietro
,
Clément Birbes
,
Andreea Dréau
,
Claire Kuchly
,
et al.
Plant and Genome San Diego 2024, Jan 2024, San Diego (California), United States. 10, 2024
Poster de conférence
hal-04432803v1
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The Hi-C method
Carole Iampietro
,
Christophe C. Klopp
,
Alain Pinton
2022
Vidéo
hal-03690622v1
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A reference genome of Solanum habrochaites
Bernard Caromel
,
Jacques Lagnel
,
Carole Iampietro
,
Marie-Claire Le Coant
,
Marine Sallaberry
,
et al.
XVII SOLANACEAE2022 International Conference on the Plant Family of Solanaceae, Nov 2022, THESSALONIKI, Greece
Poster de conférence
hal-04136943v1
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Benefits of PacBio HiFi long reads for metagenomic whole genome analysis
Adrien Castinel
,
Jean Mainguy
,
Olivier Bouchez
,
Sylvie Combes
,
Carole Iampietro
,
et al.
Environmental And Agronomical Genomics Symposium, Oct 2021, Tours, France
Poster de conférence
hal-03538657v1
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metagWGS: a workflow to analyse short and long HiFi metagenomic reads Taxonomic profile HiFi vs Short reads assembly
Joanna Fourquet
,
Jean Mainguy
,
Maïna Vienne
,
Céline Noirot
,
Pierre Martin
,
et al.
JOBIM 2022, Jul 2022, Rennes, France. Actes des exposés (keynotes, contributions orales, mini-symposia) : JOBIM2022_proceedings_oral.pdf (23 Mo) et actes des posters et démos : JOBIM2022_proceedings_posters_demos.pdf (19 Mo). ⟨10.15454/1.5572369328961167E12⟩
Poster de conférence
hal-03771202v1
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Major contribution to the bovine pangenome: whole genome sequences, SNPs, and structural variants of 154 bulls from 14 breeds
Amandine Suin
,
Camille Marcuzzo
,
Camille Eché
,
Andreea Dréau
,
Clément Birbes
,
et al.
Plant and Genome San Diego 2024, Jan 2024, San Diego, United States
Poster de conférence
hal-04432840v1
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An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family
Ming Wen
,
Qiaowei Pan
,
Elodie Jouanno
,
Jérôme Montfort
,
Margot Zahm
,
et al.
Article dans une revue
hal-03652234v1
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Structural variants detection and de novo genome assembly of a Maize line
Camille Eché
,
Clement Birbes
,
Carole Iampietro
,
Arnaud Di Franco
,
Andreea Dreau
,
et al.
SMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands
Poster de conférence
hal-03541316v1
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The benefits of long read HiFi sequencing for metabarcoding analysis
Adrien Castinel
,
Jean Mainguy
,
Sylvie Combes
,
Carole Iampietro
,
Christine Gaspin
,
et al.
PACBIO DISCOVERIES ROADSHOW PARIS, PACBIO, May 2022, Paris, France
Communication dans un congrès
hal-03740586v1
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Innovations dans le domaine de la génomique. Exemple du projet SeqOccIn.
Carole Iampietro
Rencontres france futur élevage, France Futur Élevage, May 2023, Paris, France
Communication dans un congrès
hal-04122256v1
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metagWGS: a workflow to analyse short and long HiFi metagenomic reads
Joanna Fourquet
,
Maïna Vienne
,
Jean Mainguy
,
Vincent Darbot
,
Pierre Martin
,
et al.
ECCB2022, Sep 2022, Sitges, Spain
Poster de conférence
hal-03788263v1
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Large-scale detection and characterization of interchromosomal rearrangements in normozoospermic bulls using massive genotype and phenotype data sets
Jeanlin Jourdain
,
Harmonie Barasc
,
Thomas Faraut
,
Anne Calgaro
,
Nathalie Bonnet
,
et al.
Article dans une revue
hal-04170739v1
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A dual role of dLsd1 in oogenesis: regulating developmental genes and repressing transposons
Julie M J Lepesant
,
Carole Iampietro
,
Eugenia Galeota
,
Benoit Augé
,
Marion Aguirrebengoa
,
et al.
Article dans une revue
hal-02395290v1
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Transgenerational epigenetics in quail: whole genome DNA methylation analysis
Chloé Cerutti
,
Sophie Leroux
,
Paul Terzian
,
Joanna Lledo
,
David Gourichon
,
et al.
Epigenetic Inheritance: Impact for Biology and Society, Aug 2023, Zurich, Switzerland
Poster de conférence
hal-04212971v1
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Genome structures resolve the early diversification of teleost fishes
Elise Parey
,
Alexandra Louis
,
Jérôme Montfort
,
Olivier Bouchez
,
Céline Roques
,
et al.
Article dans une revue
hal-03765882v1
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