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Keywords

Cardiac Méthodes et systèmes en IRM et optique Labex PRIMES Reproducibility Reseauₙational ImagerieRMNₒptique Reseauinternational Research software Cardiac image analysis Imagerie tomographique et thérapie par rayonnement Medical image simulation Images et Modèles Categₘixte Cloud Categₛt2i St2i Access to research outputs EGI Workflows Cardiac strain
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54

Sorina Camarasu-Pop

1. Education

  • 2010 - 2013: PhD, Computer Science, INSA de Lyon, France. Thesis subject: Exploiting heterogeneous distributed systems for Monte-Carlo simulations in the medical field. Supervisors: H.Benoit-Cattin and T. Glatard.
  • 2007 - 2008: Master of Science, Systems and Images, INSA de Lyon, France. Thesis subject: Optimisation of the distributed execution of a medical application on the Grid. Supervisor: D. Sarrut
  • 2004 - 2007: Engineering degree, Telecommunications, INSA de Lyon, France.

 

2. Professional experience

  • 2007 - present: CNRS research engineer at CREATIS laboratory, Lyon, France.
  • 2010 - 2013: PhD Student, INSA de Lyon, France.

 

3. Research interests

  • Grid and Cloud computing
  • Modeling and simulation of distributed application workflows and services
  • Reproducibility of scientific results
  • Interoperability among computing and storage platforms
  • Data management

 

Journal articles14 documents

  • Ahmad Ali, Ali Ahmad, Guillaume Vanel, Sorina Camarasu-Pop, Axel Bonnet, et al.. MicroVIP: Microscopy image simulation on the Virtual Imaging Platform. SoftwareX, Elsevier, 2021, 16, pp.100854. ⟨10.1016/j.softx.2021.100854⟩. ⟨hal-03619436⟩
  • Olivier Commowick, Michaël Kain, Romain Casey, Roxana Ameli, Jean-Christophe Ferré, et al.. Multiple sclerosis lesions segmentation from multiple experts: The MICCAI 2016 challenge dataset. NeuroImage, Elsevier, 2021, 244, pp.1-8. ⟨10.1016/j.neuroimage.2021.118589⟩. ⟨hal-03358961⟩
  • Yitian Zhou, Sophie Giffard-Roisin, Mathieu de Craene, Sorina Camarasu-Pop, Jan d'Hooge, et al.. A Framework for the Generation of Realistic Synthetic Cardiac Ultrasound and Magnetic Resonance Imaging Sequences from the same Virtual Patients. IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2018, 37 (3), pp.741-754. ⟨10.1109/TMI.2017.2708159⟩. ⟨hal-01533366⟩
  • Tristan Glatard, Gregory Kiar, Tristan Aumentado-Armstrong, Natacha Beck, Pierre Bellec, et al.. Boutiques: a flexible framework to integrate command-line applications in computing platforms. GigaScience, Oxford Univ Press, 2018, 7 (5), ⟨10.1093/gigascience/giy016⟩. ⟨hal-01817780⟩
  • Olivier Commowick, Audrey Istace, Michael Kain, Baptiste Laurent, Florent Leray, et al.. Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure. Scientific Reports, Nature Publishing Group, 2018, 8 (1), pp.13650. ⟨10.1038/s41598-018-31911-7⟩. ⟨inserm-01847873v3⟩
  • Mathieu Hatt, Baptiste Laurent, Anouar Ouahabi, Hadi Fayad, Shan Tan, et al.. The first MICCAI challenge on PET tumor segmentation. Medical Image Analysis, Elsevier, 2018, 44, pp.177-195. ⟨10.1016/j.media.2017.12.007⟩. ⟨hal-01659162⟩
  • Tristan Glatard, Marc-Etienne Rousseau, Sorina Camarasu-Pop, Reza Adalat, Natacha Beck, et al.. Software architectures to integrate workflow engines in science gateways. Future Generation Computer Systems, Elsevier, 2017, 75, pp.239-255. ⟨10.1016/j.future.2017.01.005⟩. ⟨hal-01572420⟩
  • Sorina Camarasu-Pop, Tristan Glatard, Hugues Benoit-Cattin. Combining analytical modeling, realistic simulation and real experimentation for the optimization of Monte-Carlo applications on the European Grid Infrastructure. Future Generation Computer Systems, Elsevier, 2016, 57, pp.13-23. ⟨10.1016/j.future.2015.11.002⟩. ⟨hal-01272336⟩
  • Olivier Bernard, J.G.H. Bosch, B Heyde, M. Alessandrini, D. Barbosa, et al.. Standardized evaluation system for left ventricular segmentation algorithms in 3D echocardiography. IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2016, 35 (4), pp.967-977. ⟨10.1109/TMI.2015.2503890⟩. ⟨hal-01272359⟩
  • B. Leporq, S. Camarasu-Pop, E. E. Davila-Serrano, F. Pilleul, O. Beuf. Enabling 3D-Liver Perfusion Mapping from MR-DCE Imaging Using Distributed Computing. Journal of Medical Engineering, 2013, 2013, pp.ID 471682. ⟨10.1155/2013/471682⟩. ⟨hal-00797856⟩
  • S. Camarasu-Pop, T. Glatard, R. Ferreira da Silva, P. Gueth, D. Sarrut, et al.. Monte-Carlo Simulation on Heterogeneous Distributed Systems: a Computing Framework with Parallel Merging and Checkpointing Strategies. Future Generation Computer Systems, Elsevier, 2013, pp.728-738. ⟨10.1016/j.future.2012.09.003⟩. ⟨hal-00797962⟩
  • Tristan Glatard, Carole Lartizien, Bernard Gibaud, Rafael Ferreira da Silva, Germain Forestier, et al.. A virtual imaging platform for multi-modality medical image simulation.. IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2013, 32 (1), pp.110-8. ⟨10.1109/TMI.2012.2220154⟩. ⟨inserm-00762497⟩
  • T Glatard, Sorina Camarasu-Pop. A model of pilot-job resource provisioning on production grids. Parallel Computing, Elsevier, 2011, 37, pp.684-692. ⟨10.1016/j.parco.2011.04.001⟩. ⟨hal-01950480⟩
  • Sorina Camarasu-Pop, T Glatard, J. T. Moscicki, H. Benoit-Cattin, D. Sarrut. Dynamic partitioning of GATE Monte-Carlo simulations on EGEE. Journal of Grid Computing, Springer Verlag, 2010, 8 (2), pp.241-259. ⟨10.1007/s10723-010-9153-0⟩. ⟨hal-01950481⟩

Conference papers35 documents

  • Sorina Camarasu-Pop, Axel Bonnet, Arthur Masson, Michael Kain, Michel Dojat, et al.. MSSEG-2: Un challenge d'imagerie médicale sur VIP. JCAD 2021, Dec 2021, En ligne, France. ⟨hal-03708108⟩
  • Sorina Camarasu-Pop, Axel Bonnet, Arthur Masson, Michael Kain, Michel Dojat, et al.. MSSEG-2: A medical imaging challenge on VIP. EGI Conference 2021, Oct 2021, En ligne, France. ⟨hal-03708105⟩
  • Sorina Camarasu-Pop, Carole Lartizien, Thomas Grenier, Axel Bonnet, Pascal Wassong, et al.. Exploiting GPUs on distributed infrastructures for medical imaging applications with VIP and DIRAC. 42nd international convention on information and communication technology, electronics and microelectronics, May 2019, Opatija, Croatia. pp.190-195, ⟨10.23919/mipro.2019.8757075⟩. ⟨hal-02327867⟩
  • Camille Maumet, Xavier Rolland, Axel Bonnet, Sorina Camarasu-Pop, Argiro Kokogiannaki, et al.. Open research: linking the bits and pieces with OpenAIRE-connect. OHBM 2019 - 25th Annual Meeting of the Organization for Human Brain Mapping, Jun 2019, Rome, Italy. pp.1-6. ⟨inserm-02151177⟩
  • Sorina Camarasu-Pop, Axel Bonnet, Camille Maumet, Michael Kain, Christian Barillot, et al.. Open Science for the Neuroinformatics community. DI4R 2018 - Digital Infrastructures for Research, Oct 2018, Lisbon, Portugal. pp.1. ⟨inserm-01846994⟩
  • Anchen Chai, Sorina Camarasu-Pop, Tristan Glatard, Hugues Benoit-Cattin, Frederic Suter. Evaluation through Realistic Simulations of File Replication Strategies for Large Heterogeneous Distributed Systems. Europar 2018 - 24th International European Conference on Parallel and Distributed Computing ; Workshop HeteroPar 2018, Aug 2018, Turin, Italy. pp.409-420, ⟨10.1007/978-3-030-10549-5_32⟩. ⟨hal-01887369⟩
  • Sorina Camarasu-Pop, Axel Bonnet, Camille Maumet, Michael Kain, Christian Barillot, et al.. Interoperability with Boutiques and CARMIN. DI4R 2018 - Digital Infrastructures for Research, Oct 2018, Lisbon, Portugal. pp.1. ⟨inserm-01846997⟩
  • Cécile Cavet, Vincent Legoll, Jérôme Pansanel, Sorina Camarasu-Pop, Adrien Ramparison, et al.. FG-Cloud : un service de cloud computing fédéré pour le calcul scientifique. Journées Réseaux de l’Enseignement et de la Recherche.(JRES ) 2017, Nov 2017, Nantes, France. ⟨hal-02019194⟩
  • Teresa Gomez-Diaz, Vincent Legoll, Jérôme Pansanel, Sorina Camarasu-Pop, Genevieve Romier, et al.. FG-SOL : un nouveau service pour la préservation et la réutilisation des logiciels de la recherche. JRES 2017, RENATER, Nov 2017, Nantes, France. https://www.jres.org/fr/presentation?id=119. ⟨hal-01806853⟩
  • Anchen Chai, Mohammad-Mahdi Bazm, Sorina Camarasu-Pop, Tristan Glatard, Hugues Benoit-Cattin, et al.. Modeling Distributed Platforms from Application Traces for Realistic File Transfer Simulation. 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing., May 2017, Madrid, Spain. ⟨hal-01452694⟩
  • L. Mahieu-Williame, S. Gaillard, D. Grenier, R. Bolbos, J.B. Langlois, et al.. Protocole de caractérisation d'antenne radiofréquence pour l'IRM. SFRMBM, 2017, Bordeaux, France. ⟨hal-01905449⟩
  • Olivier Bernard, Brecht Heyde, Martino Alessandrini, Daniel Barbosa, Sorina Camarasu-Pop, et al.. Challenge on Endocardial Three-dimensional Ultrasound Segmentation (CETUS). Challenge on Endocardial Three-dimensional Ultrasound Segmentation, Sep 2014, Boston, United States. ⟨hal-02048165⟩
  • C. Mouton, E. E. Dávila Serrano, F. Cervenansky, S. Camarasu-Pop, E. Correa, et al.. CreaTools: A development framework for medical image processing software ; an application to segmentation, anomaly detection and quantification for coronary arteries. European BioImage Analysis Symposium 2013, Oct 2013, Barcelone, Spain. ⟨hal-00921503⟩
  • S. Camarasu-Pop, T. Glatard, H. Benoit-Cattin. Simulating Application Workflows and Services Deployed on the European Grid Infrastructure. 13th IEEE/ACM International Symposium on Cluster, Cloud, and Grid Computing, May 2013, Delft, Netherlands. pp.18-25, ⟨10.1109/CCGrid.2013.13⟩. ⟨hal-00843917⟩
  • E. E. Dávila Serrano, L. Guigues, J.-P. Roux, F. Cervenansky, S. Camarasu-Pop, et al.. CreaTools: A Framework to Develop Medical Image Processing Software: Application to Simulate Pipeline Stent Deployment in Intracranial Vessels with Aneurysms. International Conference on Computer Vision and Graphics, Sep 2012, Warsaw, Poland. pp.55-62, ⟨10.1007/978-3-642-33564-8_7⟩. ⟨hal-00829662⟩
  • E. E. Dávila Serrano, L. Guigues, F. Cervenansky, S. Camarasu-Pop, J. G. Riveros Reyes, et al.. CreaTools: a framework to develop medical image processing software. Application to simulate pipeline stent deployment in intracranial vessels with aneurysms. Int. Conf. Comput. Vision. Graphics., Sep 2012, Warsaw, Poland. pp.55-62. ⟨hal-00842740⟩
  • E. E. Dávila Serrano, L. Guigues, J.P. Roux, F. Cervenansky, C. Mouton, et al.. CreaTools: applications and development framework for medical image-processing software. 13th Libre Software Meeting, Jul 2012, Genève, Switzerland. ⟨hal-00831278⟩
  • T. Glatard, A. Marion, H. Benoit-Cattin, S. Camarasu-Pop, P. Clarysse, et al.. Multi-modality image simulation with the Virtual Imaging Platform: Illustration on cardiac echography and MRI. IEEE International Symposium on Biomedical Imaging - ISBI2012, May 2012, Barcelona, Spain. pp.98-101, ⟨10.1109/ISBI.2012.6235493⟩. ⟨hal-00830243⟩
  • Lihui Wang, Sorina Camarasu-Pop, Glatard Tristan, Yue-Min Zhu, Isabelle E. Magnin. Diffusion MRI Simulation with the Virtual Imaging Platform. journées scientifiques mésocentres et France Grilles 2012, Oct 2012, Paris, France. ⟨hal-00766081⟩
  • E. E. Dávila Serrano, L. Guigues, J. P. Roux, F. Cervenansky, S. Camarasu-Pop, et al.. CreaTools: applications and development framework for medical image-processing software. ISBI Workshop on Open Source Medical Image Analysis Software, Apr 2012, Barcelona, Spain. ⟨hal-00831272⟩
  • Luisa Arrabito, David Bouvet, Sorina Camarasu-Pop, Yonny Cardenas, Nicolas Clémentin, et al.. Instance nationale et multi-communauté de DIRAC pour France Grilles. journées scientifiques mésocentres et France Grilles 2012, Oct 2012, Paris, France. ⟨hal-00766084⟩
  • B. Leporq, Sorina Camarasu-Pop, F. Pilleul, O. Beuf. 3D-liver MR-DCE imaging for quantitative perfusion mapping using EGI grid. Colloque Recherche en Imagerie et Technologies pour la Santé (RITS), 2011, Rennes, France. ⟨hal-01950477⟩
  • Tristan Glatard, Rafael Ferreira da Silva, Sorina Camarasu-Pop. Le calcul distribué : un outil pour l'imagerie médicale. Rencontres Scientifiques France Grilles 2011, Sep 2011, Lyon, France. ⟨hal-00653015⟩
  • B. Leporq, Sorina Camarasu-Pop, F. Pilleul, O. Beuf. 3D-liver quantitative perfusion mapping using EGEE grid with MR-DCE imaging and MS-325 blood pool contrast agent. ISMRM, 2011, Montreal, Canada. pp.2046. ⟨hal-01950479⟩
  • P. Gueth, Sorina Camarasu-Pop, T Glatard, L. Grevillot, D. Sarrut. PBS proton treatment plan simulation with the GATE-Lab. 50th International PTCOG meeting (Particle Therapy Co-Operative Group), 2011, Philadelphia, US, Unknown Region. ⟨hal-01950478⟩
  • A. Tsaregorodtsev, V. Hamar, M. Sapunov, T. Glatard, S. Camarasu-Pop, et al.. Infrastructure DIRAC pour les Communautés Pluridisciplinaires. Rencontres Scientifiques France Grilles 2011, Sep 2011, Lyon, France. ⟨hal-00653025⟩
  • Rafael Ferreira da Silva, Sorina Camarasu-Pop, Baptiste Grenier, Vanessa Hamar, David Manset, et al.. Multi-infrastructure workflow execution for medical simulation in the Virtual Imaging Platform. HealthGrid 2011, Jun 2011, Bristol, United Kingdom. pp.1-10. ⟨hal-00677827⟩
  • T Li, Sorina Camarasu-Pop, T Glatard, T Grenier, H. Benoit-Cattin. Optimization of Mean-Shift scale parameters on the EGEE grid. Studies in health technology and informatics, Proceedings of Healthgrid 2010, 2010, Unknown, Unknown Region. pp.203-214, ⟨10.3233/978-1-60750-583-9-203⟩. ⟨hal-01871246⟩
  • Sorina Camarasu-Pop, Frederic Cervenansky, Yonny Cardenas, Jean-Yves Nief, Hugues Benoit-Cattin. Overview of Medical Data Management Solutions for Research Communities. Cluster, Cloud and Grid Computing (CCGrid), 2010 10th IEEE/ACM International Conference on, 2010, Unknown, Unknown Region. pp.739--744. ⟨hal-01792367⟩
  • Pascal Calvat, Tristan Glatard, Sorina Camarasu-Pop, Ching Chuen Teck Mark, Tan Wen-Jun. Two experiments with application-level quality of service on the EGEE grid. GMAC '10, Jun 2010, Washington, United States. pp.ISBN: 978-1-4503-0100-8, ⟨10.1145/1809029.1809031⟩. ⟨hal-00622791⟩
  • T Glatard, X. . Zhou, Sorina Camarasu-Pop, O. . Smirnova, H. . Muller. A comparison between ARC and gLite for medical image processing on Grids. 2nd workshop on Medical imaging on GRID, HPC and GPU infrastructures: achievements and perspectives (MICCAI-Grid), 2009, London, UK, Unknown Region. ⟨hal-01950482⟩
  • Ketan Maheshwari, Tristan Glatard, Joel Schaerer, Bertrand Delhay, Sorina Camarasu-Pop, et al.. Towards Production-level Cardiac Image Analysis with Grids. HealthGrid 2009, Jun 2009, Berlin, Germany. pp.31-40, ⟨10.3233/978-1-60750-027-8-31⟩. ⟨hal-00677800⟩
  • T Glatard, Sorina Camarasu-Pop. Modelling pilot-job applications on production grids. 7th international workshop on Algorithms, Models and Tools for Parallel Computing on Heterogeneous Platforms (Heteropar 09), 2009, Delft, The, Netherlands. ⟨hal-01950483⟩
  • Sorina Camarasu-Pop, H. Benoit-Cattin, J. Montagnat, D. Racoceanu. Grids for Content-Based Medical Image Indexing and Retrieval. ICT4Health, Oncomedia, 2008, Manila, The, Philippines. ⟨hal-01950484⟩
  • Sorina Camarasu-Pop, H. Benoit-Cattin, L. Guigues, P. Clarysse, O. Bernard, et al.. Towards a Virtual Radiological Platform Based on a Grid Infrastructure. Medical imaging on grids: achievements and perspectives (MICCAI Grid Workshop), 2008, New York, USA, Unknown Region. pp.85-95. ⟨hal-01922371⟩

Poster communications4 documents

  • Laurent Mahieu-Williame, Sophie Gaillard, Denis Grenier, Radu Bolbos, Jean-Baptiste Langlois, et al.. SNR and volume characterization of RF coils: A simple procedure and an automatic post-processing tool for a straightforward comparison. 25th annual meeting & exhibition ISMRBM, Apr 2017, Honolulu, United States. pp.Abstract #3830, 2017. ⟨hal-01693554⟩
  • Laurent Mahieu-Williame, Sophie Gaillard, Denis Grenier, Radu Bolbos, Jean-Baptiste Langlois, et al.. PROTOCOLE DE CARACTERISATION DE CAPTEUR IRM. Recherche en Imagerie et Technologies pour la Santé (RITS) 2017, Mar 2017, Lyon, France. ⟨hal-01505478⟩
  • Laurent Mahieu-Williame, Sophie Gaillard, Denis Grenier, Radu Bolbos, Jean-Baptiste Langlois, et al.. Protocole de caractérisation d'antenne radiofréquence pour l'IRM. 3ème Congrès de la SFRMBM, Mar 2017, Bordeaux, France. ⟨hal-01560556⟩
  • Teresa Gomez-Diaz, Vincent Legoll, Jérôme Pansanel, Sorina Camarasu-Pop, Genevieve Romier. Research software services: FG-SOL : access & preservation for research software. EGI 2017, May 2017, Catania, Italy. 2017, ⟨10.5281/zenodo.1405606⟩. ⟨hal-01806908⟩

Reports1 document

  • G. Alphonse, D. Ardail, E. Armandy, M. Bajard, J. Balosso, et al.. 2012 Activity Report of the Regional Research Programme on Hadrontherapy for the ETOILE Center. [Research Report] Centre Etoile; Université Lyon 1 - Claude Bernard. 2013. ⟨hal-00840163⟩