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Journal articles27 documents

  • Khaled Fadhlaoui, Marie-Edith Arnal, Matthieu Martineau, Paméla Camponova, Bernard Ollivier, et al.. Archaea, specific genetic traits, and development of improved bacterial live biotherapeutic products: another face of next-generation probiotics. Applied Microbiology and Biotechnology, Springer Verlag, 2020, 104 (11), pp.4705-4716. ⟨10.1007/s00253-020-10599-8⟩. ⟨hal-02996543⟩
  • Guillaume Borrel, Jean-François Brugere, Simonetta Gribaldo, Ruth Schmitz, Christine Moissl-Eichinger. The host-associated archaeome. Nature Reviews Microbiology, Nature Publishing Group, 2020, ⟨10.1038/s41579-020-0407-y⟩. ⟨pasteur-02942982⟩
  • Bérénice Batut, Kevin Gravouil, Clemence Defois, Saskia Hiltemann, Jean-François Brugère, et al.. ASaiM: a Galaxy-based framework to analyze microbiota data. GigaScience, BioMed Central, 2018, 7 (6). ⟨hal-01987682⟩
  • Bérénice Batut, Kevin Gravouil, Clemence Defois, Saskia Hiltemann, Jean-François Brugère, et al.. ASaiM: a Galaxy-based framework to analyze microbiota data. GigaScience, BioMed Central, 2018, 7 (6), pp.1-7. ⟨10.1093/gigascience/giy057⟩. ⟨hal-01990448⟩
  • Jean-François Brugère, Wajdi Ben Hania, Marie-Edith Arnal, Céline Ribière, Nathalie Ballet, et al.. Archaea: Microbial Candidates in Next-generation Probiotics Development. Journal of Clinical Gastroenterology, Lippincott, Williams & Wilkins, 2018, 52, pp.S71-S73. ⟨10.1097/MCG.0000000000001043⟩. ⟨hal-01981676⟩
  • Nadia Gaci, Prem Prashant Chaudhary, William Tottey, Monique Alric, Jean-François Brugère. Functional amplification and preservation of human gut microbiota. Microbial Ecology in Health and Disease, Co-Action Publishing, 2017, 28 (1), pp.1308070. ⟨10.1080/16512235.2017.1308070⟩. ⟨hal-01612774⟩
  • Burkhardt Flemer, Nadia Gaci, Guillaume Borrel, Ian R. Sanderson, Prem P. Chaudhary, et al.. Fecal microbiota variation across the lifespan of the healthy laboratory rat. Gut microbes, Taylor & Francis, 2017, 8 (5), pp.428 - 439. ⟨10.1080/19490976.2017.1334033⟩. ⟨hal-01658606⟩
  • Abdel Belkorchia, Jean-François Pombert, Valérie Polonais, Nicolas Parisot, Frédéric Delbac, et al.. Comparative genomics of microsporidian genomes reveals a minimal non-coding RNA set and new insights for transcription in minimal eukaryotic genomes. DNA Research, Oxford University Press (OUP), 2017, 24 (3), pp.251-260. ⟨10.1093/dnares/dsx002⟩. ⟨hal-01594835⟩
  • William Tottey, David Feria Gervasio, Nadia Gaci, Brigitte Laillet, Estelle Pujos-Guillot, et al.. Colonic transit time is a driven force of the gut microbiota composition and metabolism: In vitro evidence. Journal of Neurogastroenterology and Motility, Korean Society of Neurogastroenterology and Motility, 2017, 23 (1), pp.124-134. ⟨10.5056/jnm16042⟩. ⟨hal-01595498⟩
  • Guillaume Borrel, Angela Mccann, Jennifer Deane, Marta C Neto, Denise B Lynch, et al.. Genomics and metagenomics of trimethylamine-utilizing Archaea in the human gut microbiome. ISME Journal, Nature Publishing Group, 2017, 11 (9), pp.2059 - 2074. ⟨10.1038/ismej.2017.72⟩. ⟨hal-01658467⟩
  • Faycal Ounnas, Florence Privé, Patricia Salen, Nadia Gaci, William Tottey, et al.. Whole Rye Consumption Improves Blood and Liver n-3 Fatty Acid Profile and Gut Microbiota Composition in Rats. PLoS ONE, Public Library of Science, 2016, 11 (2), pp.e0148118. ⟨10.1371/journal.pone.0148118.s003⟩. ⟨hal-01612771⟩
  • Guillaume Borrel, Nicolas Parisot, Hugh Harris, Eric Peyretaillade, Nadia Gaci, et al.. Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine.. BMC Genomics, BioMed Central, 2014, 15 (1), pp.679. ⟨10.1186/1471-2164-15-679⟩. ⟨pasteur-01059404⟩
  • Guillaume Borrel, Nadia Gaci, Pierre Peyret, Paul W. O'Toole, Simonetta Gribaldo, et al.. Unique Characteristics of the Pyrrolysine System in the 7th Order of Methanogens: Implications for the Evolution of a Genetic Code Expansion Cassette. Archaea, Hindawi Publishing Corporation, 2014, 2014, pp.1 - 11. ⟨10.1155/2014/374146⟩. ⟨hal-01612761⟩
  • F. Jaziri, N. Parisot, A. Abid, J. Denonfoux, C. Ribiere, et al.. PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification. Database Searcher, Meckler Corp., 2014, 2014, pp.24771669. ⟨10.1093/database/bau036⟩. ⟨hal-01110161⟩
  • Faouzi Jaziri, Nicolas Parisot, Anis Abid, Jérémie Denonfoux, C. Ribière, et al.. PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification. Database - The journal of Biological Databases and Curation, Oxford University Press, 2014, 2014, pp.bau036. ⟨10.1093/database/bau036⟩. ⟨hal-01612766⟩
  • Jean-François Brugère, Guillaume Borrel, Nadia Gaci, William Tottey, Paul O'Toole, et al.. Archaebiotics: proposed therapeutic use of archaea to prevent trimethylaminuria and cardiovascular disease. Gut microbes, Taylor & Francis, 2014, 5 (1), pp.5-10. ⟨hal-02635844⟩
  • David Feria Gervasio, William Tottey, Nadia Gaci, Monique Alric, Jean-Michel Cardot, et al.. Three-stage continuous culture system with a self-generated anaerobia to study the regionalized metabolism of the human gut microbiota. Journal of Microbiological Methods, Elsevier, 2014, 96, pp.111-118. ⟨10.1016/j.mimet.2013.11.015⟩. ⟨hal-01189891⟩
  • Paul W O’toole, Jean-François Brugère, Guillaume Borrel, Nadia Gaci, William Tottey, et al.. Archaebiotics Proposed therapeutic use of archaea to prevent trimethylaminuria and cardiovascular disease. Gut microbes, Taylor & Francis, 2014, 5 (1), pp.5 - 10. ⟨10.4161/gmic.26749⟩. ⟨hal-01612755⟩
  • Guillaume Borrel, Hugh Harris, Nicolas Parisot, Nadia Gaci, William Tottey, et al.. Genome Sequence of "Candidatus Methanomassiliicoccus intestinalis" Issoire-Mx1, a Third Thermoplasmatales-Related Methanogenic Archaeon from Human Feces. Genome Announcements, American Society for Microbiology, 2013, 1 (4), pp.e00453-13. ⟨10.1128/genomeA.00453-13⟩. ⟨pasteur-02445822⟩
  • William Tottey, Jeremie Denonfoux, Faouzi Jaziri, Nicolas Parisot, Mohiedine Missaoui, et al.. The Human Gut Chip ‘‘HuGChip’’, an Explorative Phylogenetic Microarray for Determining Gut Microbiome Diversity at Family Level. PLoS ONE, Public Library of Science, 2013, 449, pp.804 - 804. ⟨10.1371/journal.pone.0062544.s004⟩. ⟨hal-01612757⟩
  • Guillaume Borrel, Paul O 'Toole, Hugh Harris, Pierre Peyret, Jean-François Brugere, et al.. Phylogenomic Data Support a Seventh Order of Methylotrophic Methanogens and Provide Insights into the Evolution of Methanogenesis. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2013, 5 (10), pp.1769 - 1780. ⟨10.1093/gbe/evt128⟩. ⟨hal-01612746⟩
  • Guillaume Borrel, Hugh Mb Harris, William Tottey, A. Mihajlovski, Nicolas Parisot, et al.. Genome Sequence of "Candidatus Methanomethylophilus alvus" Mx1201, a Methanogenic Archaeon from the Human Gut Belonging to a Seventh Order of Methanogens. Journal of Bacteriology, American Society for Microbiology, 2012, 194 (24), pp.6944 - 6945. ⟨10.1128/JB.01867-12⟩. ⟨hal-01612754⟩
  • Jean-François Brugère, Agnès Mihajlovski, Mohieddine Missaoui, Pierre Peyret. Tools for stools: the challenge of assessing human intestinal microbiota using molecular diagnostics. Expert Review of Molecular Diagnostics, Expert Reviews (formerly Future Drugs), 2009, 9 (4), pp.353-65. ⟨10.1586/erm.09.16⟩. ⟨hal-00529610⟩
  • Jean-François Brugere, Agnès Mihajlovski, Monique Alric, Jean-François Brugère. A putative new order of methanogenic Archaea inhabiting the human gut, as revealed by molecular analyses of the mcrA gene. Research in Microbiology, Elsevier, 2008, 159 (7-8), pp.516 - 521. ⟨10.1016/j.resmic.2008.06.007⟩. ⟨hal-01612747⟩
  • Da-Kang Shen, Ali Dehghan Noodeh, Abdolhassan Kazemi, Renée Grillot, Geoff Robson, et al.. Characterisation and expression of phospholipases B from the opportunistic fungus Aspergillus fumigatus. FEMS Microbiology Letters, Wiley-Blackwell, 2004, 239 (1), pp.87 - 93. ⟨10.1016/j.femsle.2004.08.019⟩. ⟨hal-01612756⟩
  • Jean-François Brugère, Emmanuel Cornillot, Guy Méténier, Aaron Bensimon, Christian Vivarès. Encephalitozoon cuniculi (Microspora) genome: physical map and evidence for telomere-associated rDNA units on all chromosomes. Nucleic Acids Research, Oxford University Press, 2000, 28 (10), pp.2026 - 2033. ⟨10.1093/nar/28.10.2026⟩. ⟨hal-01612753⟩
  • Jean-François Brugère, Emmanuel Cornillot, Guy Méténier, Christian Vivarès. In-gel DNA radiolabelling and two-dimensional pulsed field gel electrophoresis procedures suitable for fingerprinting and mapping small eukaryotic genomes. Nucleic Acids Research, Oxford University Press, 2000, 28 (10), pp.48e - 48. ⟨10.1093/nar/28.10.e48⟩. ⟨hal-01612762⟩

Conference papers2 documents

  • Jean François Brugere, Wajdi Ben Hania, Marie-Edith Arnal, Céline Ribière, Nathalie Ballet, et al.. Archaea microbial candidates in next-generation probiotics development. 9. Meeting on Probiotics, Prebiotics and New Foods, Nutraceuticals and Botanicals for Nutrition and Human and Microbiota, Sep 2017, Rome, Italy. ⟨10.1097/MCG.0000000000001043⟩. ⟨hal-02737967⟩
  • Jean-François Brugère, Guillaume Borrel, Nadia Gaci, William Tottey, Monique Alric, et al.. Le concept "Archaebiotics", vers de nouveaux probiotiques préventifs des maladies cardiovasculaires ?. 6. Journée scientifique du CNRH Auvergne, Centre de Recherche en Nutrition Humaine (CRNH). Clermont-Ferrand, FRA., Nov 2013, Clermont - Ferrand, France. pp.11-11. ⟨hal-01056810⟩