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37

Boris Hejblum CV

Journal articles25 documents

  • Marine Gauthier, Denis Agniel, Rodolphe Thiébaut, Boris Hejblum. dearseq: a variance component score test for RNA-Seq differential analysis that effectively controls the false discovery rate. NAR Genomics and Bioinformatics, Oxford University Press, 2020, 2 (4), pp.lqaa093. ⟨10.1093/nargab/lqaa093⟩. ⟨hal-02138664⟩
  • Aurélie Wiedemann, Emile Foucat, Hakim Hocini, Cécile Lefebvre, Boris Hejblum, et al.. Long-lasting severe immune dysfunction in Ebola virus disease survivors. Nature Communications, Nature Publishing Group, 2020, 11 (1), pp.3730. ⟨10.1038/s41467-020-17489-7⟩. ⟨inserm-02952048⟩
  • Lin Lin, Boris Hejblum. Bayesian mixture models for cytometry data analysis. Wiley Interdisciplinary Reviews: Computational Statistics, Wiley, 2020, ⟨10.1002/wics.1535⟩. ⟨hal-03100447⟩
  • Stephanie Chan, Boris P. Hejblum, Abhishek Chakrabortty, Tianxi Cai. Semi-supervised estimation of covariance with application to phenome-wide association studies with electronic medical records data. Statistical Methods in Medical Research, SAGE Publications, 2020, 29 (2), pp.455-465. ⟨10.1177/0962280219837676⟩. ⟨hal-02425459⟩
  • Édouard Lhomme, Boris Hejblum, Christine Lacabaratz, Aurélie Wiedemann, Jean-Daniel Lelievre, et al.. Analyzing cellular immunogenicity in vaccine clinical trials: a new statistical method including non-specific responses for accurate estimation of vaccine effect. Journal of Immunological Methods, Elsevier, 2020, 477, pp.112711. ⟨10.1016/j.jim.2019.112711⟩. ⟨hal-02425379⟩
  • Soufiane Ajana, Audrey Cougnard-Grégoire, Johanna Colijn, Bénédicte M.J. Merle, Timo Verzijden, et al.. Predicting Progression to Advanced Age-Related Macular Degeneration from Clinical, Genetic, and Lifestyle Factors Using Machine Learning. Ophthalmology: Journal of The American Academy of Ophthalmology, Elsevier, In press, ⟨10.1016/j.ophtha.2020.08.031⟩. ⟨hal-03100320⟩
  • Lila Bouadma, Aurélie Wiedemann, Juliette Patrier, Mathieu Surénaud, Paul-Henri Wicky, et al.. Immune Alterations in a Patient with SARS-CoV-2-Related Acute Respiratory Distress Syndrome. Journal of Clinical Immunology, Springer Verlag, 2020, 40, pp.1082-1092. ⟨10.1007/s10875-020-00839-x⟩. ⟨hal-03100382⟩
  • Boris P. Hejblum, Chariff Alkhassim, Raphael Gottardo, François Caron, Rodolphe Thiébaut. Sequential Dirichlet Process Mixtures of Multivariate Skew t-distributions for Model-based Clustering of Flow Cytometry Data. Annals of Applied Statistics, Institute of Mathematical Statistics, 2019, 13 (1), pp.638-660. ⟨10.1214/18-AOAS1209⟩. ⟨hal-01579063⟩
  • Boris P. Hejblum, Griffin Weber, Katherine Liao, Nathan Palmer, Susanne Churchill, et al.. Probabilistic record linkage of de-identified research datasets with discrepancies using diagnosis codes. Scientific Data , Nature Publishing Group, 2019, 6, pp.180298. ⟨10.1038/sdata.2018.298⟩. ⟨hal-01942279⟩
  • Soufiane Ajana, Niyazi Acar, Lionel Bretillon, Boris Hejblum, Hélène Jacqmin-Gadda, et al.. Benefits of dimension reduction in penalized regression methods for high dimensional grouped data: a case study in low sample size. Bioinformatics, Oxford University Press (OUP), 2019, 35, pp.3628-3634. ⟨10.1093/bioinformatics/btz135⟩. ⟨hal-02425449⟩
  • Rodolphe Thiébaut, Boris Hejblum, Hakim Hocini, Henri Bonnabau, Jason Skinner, et al.. Gene Expression Signatures Associated With Immune and Virological Responses to Therapeutic Vaccination With Dendritic Cells in HIV-Infected Individuals. Frontiers in Immunology, Frontiers, 2019, 10, pp.874. ⟨10.3389/fimmu.2019.00874⟩. ⟨hal-02267014⟩
  • Dorrain Low, Sophie Lefèvre-Arbogast, Raúl Dominguez-Gonzalez, Mireia Urpi Sarda, Pierre Micheau, et al.. Diet-Related Metabolites Associated with Cognitive Decline Revealed by Untargeted Metabolomics in a Prospective Cohort. Molecular Nutrition and Food Research, Wiley-VCH Verlag, 2019, pp.e1900177. ⟨10.1002/mnfr.201900177⟩. ⟨hal-02167524⟩
  • Sophie Lefèvre-Arbogast, David Gaudout, Julien Bensalem, Luc Letenneur, Jean-François Dartigues, et al.. Pattern of polyphenol intake and the long-term risk of dementia in older persons. Neurology, American Academy of Neurology, 2018, 90 (22), pp.e1979 - e1988. ⟨10.1212/WNL.0000000000005607⟩. ⟨hal-01887895⟩
  • Daniel Commenges, Chariff Alkhassim, Raphael Gottardo, Boris P. Hejblum, Rodolphe Thiébaut. cytometree: A binary tree algorithm for automatic gating in cytometry analysis. Cytometry Part A, Wiley, 2018, 93 (11), pp.1132-1140. ⟨10.1002/cyto.a.23601⟩. ⟨hal-01887966⟩
  • Matey Neykov, Boris P. Hejblum, Jennifer Sinnott. Kernel machine score test for pathway analysis in the presence of semi-competing risks. Statistical Methods in Medical Research, SAGE Publications, 2018, Statistical Methods in Medical Research, 27 (4), pp.1099-1114. ⟨10.1177/0962280216653427⟩. ⟨hal-01395970⟩
  • Jennifer Sinnott, Fiona Cai, Sheng Yu, Boris P. Hejblum, Chuan Hong, et al.. PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies. Journal of the American Medical Informatics Association, BMJ Publishing Group, 2018, ⟨10.1093/jamia/ocy056⟩. ⟨hal-01887930⟩
  • Boris P. Hejblum, Jing Cui, Lauren J. Lahey, Andrew Cagan, Jeffrey A. Sparks, et al.. Association between anti-citrullinated fibrinogen antibodies and coronary artery disease in rheumatoid arthritis. Arthritis Care & Research = Arthritis Care and Research, Wiley-Blackwell, 2018, 70 (7), pp.1113-1117. ⟨10.1002/acr.23444⟩. ⟨hal-01654403⟩
  • Anne Rechtien, Laura Richert, Hadrien Lorenzo, Gloria Martrus, Boris P. Hejblum, et al.. Systems Vaccinology Identifies an Early Innate Immune Signature as a Correlate of Antibody Responses to the Ebola Vaccine rVSV-ZEBOV. Cell Reports, Elsevier Inc, 2017, 20 (9), pp.2251 - 2261. ⟨10.1016/j.celrep.2017.08.023⟩. ⟨hal-01579246⟩
  • Denis Agniel, Boris P. Hejblum. Variance component score test for time-course gene set analysis of longitudinal RNA-seq data. Biostatistics, Oxford University Press (OUP), 2017, Biostatistics, 18 (4), pp.589-604. ⟨10.1093/biostatistics/kxx005⟩. ⟨hal-01579077⟩
  • Katherine Liao, Jeffrey Sparks, Boris P. Hejblum, I-Hsin Kuo, Jing Cui, et al.. Phenome-Wide Association Study of Autoantibodies to Citrullinated and Noncitrullinated Epitopes in Rheumatoid Arthritis. Arthritis & rheumatology, Wiley, 2017, 69 (4), pp.742 - 749. ⟨10.1002/art.39974⟩. ⟨hal-01654405⟩
  • Benoit Liquet, Pierre Lafaye de Micheaux, Boris P. Hejblum, Rodolphe Thiébaut. Group and sparse group partial least square approaches applied in genomics context. Bioinformatics, Oxford University Press (OUP), 2016, 32 (1), pp.35-42. ⟨10.1093/bioinformatics/btv535⟩. ⟨hal-01288891⟩
  • Boris P. Hejblum, Jason Skinner, Rodolphe Thiébaut. Time-Course Gene Set Analysis for Longitudinal Gene Expression Data. PLoS Computational Biology, Public Library of Science, 2015, 11 (6), pp.e1004310. ⟨10.1371/journal.pcbi.1004310⟩. ⟨hal-01203446⟩
  • Rodolphe Thiébaut, Boris P. Hejblum, Laura Richert. L’analyse des « Big Data » en recherche clinique. Epidemiology and Public Health / Revue d'Epidémiologie et de Santé Publique, Elsevier Masson, 2014, 62 (1), pp.1-4. ⟨10.1016/j.respe.2013.12.021⟩. ⟨inserm-00933691⟩
  • David Furman, Boris P. Hejblum, Noah Simon, Vladimir Jojic, Cornelia L. Dekker, et al.. Systems analysis of sex differences reveals an immunosuppressive role for testosterone in the response to influenza vaccination.. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2014, 111 (2), pp.869-74. ⟨10.1073/pnas.1321060111⟩. ⟨inserm-00933693⟩
  • Daniel Commenges, Boris P. Hejblum. Evidence synthesis through a degradation model applied to myocardial infarction.. Lifetime Data Analysis, Springer Verlag, 2013, 19 (1), pp.1-18. ⟨10.1007/s10985-012-9227-3⟩. ⟨inserm-00726036⟩

Poster communications4 documents

  • Cécile Delcourt, Soufiane Ajana, Olivier Berdeaux, Bénédicte Merle, Hélène Jacqmin-Gadda, et al.. Association of a predictor of retinal omega-3 polyunsaturated fatty acids with advanced age-related macular degeneration: the BLISAR project. Annual meeting of the association-for-research-in-vision-and-ophthalmology (ARVO), Apr 2019, Vancouver, Canada, United States. Association for Research in Vision and Ophthalmology, Investigative Ophthalmology and Visual Science, 60 (9), 1 p., 2019. ⟨hal-02736092⟩
  • Niyazi Acar, Soufiane Ajana, Olivier Berdeaux, Hélène Jacqmin-Gadda, Boris Hejblum, et al.. Identification of a circulating biomarker highly associated to retinal omega-3 polyunsaturated fatty acid content: the BLISAR project. Annual meeting of the association for research in vision and ophthalmology (ARVO), Apr 2019, Vancouver, Canada, United States. Association for Research in Vision and Ophthalmology, Investigative Ophthalmology and Visual Science, 60 (9), 1 p., 2019. ⟨hal-02737963⟩
  • Dorrain Low Yanwen, Sophie Lefèvre-Arbogast, Mélanie Petera, Pierre Micheau, Delphine Centeno, et al.. Identification of dietary modulators of cognitive function in ageing using metabolomics discovery. 8. International Conference on Polyphenols and Health ICPH 2017, Oct 2017, Québec, Canada. 2017. ⟨hal-01595015⟩
  • Dorrain Low Yanwen, Sophie Lefèvre-Arbogast, Mélanie Pétéra, Pierre Micheau, Delphine Centeno, et al.. Identification of dietary modulators of cognitive function in ageing using metabolomics discovery. Journée Scientifique du CRNH Auvergne, Nov 2017, Clermont-Ferrand, Canada. 2017, Journée Scientifique du CRNH Auvergne 2017. ⟨hal-01644048⟩

Books1 document

Preprints, Working Papers, ...7 documents

  • Denis Agniel, Layla Parast, Boris Hejblum. Doubly-robust evaluation of high-dimensional surrogate markers. 2020. ⟨hal-03100499⟩
  • Paul Freulon, Jérémie Bigot, Boris Hejblum. CytOpT: Optimal Transport with Domain Adaptation for Interpreting Flow Cytometry data. 2020. ⟨hal-03100405⟩
  • Mélanie Prague, Linda Wittkop, Quentin Clairon, Dan Dutartre, Rodolphe Thiébaut, et al.. Population modeling of early COVID-19 epidemic dynamics in French regions and estimation of the lockdown impact on infection rate. 2020. ⟨hal-02555100⟩
  • Thomas Ferté, Sébastien Cossin, Thierry Schaeverbeke, Thomas Barnetche, Vianney Jouhet, et al.. Automatic phenotyping of electronical health record: PheVis algorithm. 2020. ⟨hal-03100435⟩
  • Viviane Philipps, Boris P. Hejblum, Mélanie Prague, Daniel Commenges, Cécile Proust-Lima. Robust and Efficient Optimization Using a Marquardt-Levenberg Algorithm with R Package marqLevAlg. 2020. ⟨hal-03100489⟩
  • Boris P. Hejblum, Kevin Kunzmann, Ennio Lavagnini, Anna Hutchinson, David Robertson, et al.. Realistic and Robust Reproducible Research for Biostatistics. 2020. ⟨hal-03100421⟩
  • Cédric Colas, Boris P. Hejblum, Sebastien Rouillon, Rodolphe Thiébaut, Pierre-Yves Oudeyer, et al.. EpidemiOptim: a Toolbox for the Optimization of Control Policies in Epidemiological Models. 2020. ⟨hal-03099898⟩