Skip to Main content
Number of documents

48

Boris Hejblum CV


Journal articles35 documents

  • Laura Richert, Jean-Daniel Lelievre, Christine Lacabaratz, Lucile Hardel, Hakim Hocini, et al.. T Cell Immunogenicity, Gene Expression Profile, and Safety of Four Heterologous Prime-Boost Combinations of HIV Vaccine Candidates in Healthy Volunteers: Results of the Randomized Multi-Arm Phase I/II ANRS VRI01 Trial. Journal of Immunology, Publisher : Baltimore : Williams & Wilkins, c1950-. Latest Publisher : Bethesda, MD : American Association of Immunologists, 2022. ⟨hal-03690137⟩
  • Denis Agniel, Boris Hejblum, Rodolphe Thiébaut, Layla Parast. Doubly-robust evaluation of high-dimensional surrogate markers. Biostatistics, Oxford University Press (OUP), In press, ⟨10.1093/biostatistics/kxac020⟩. ⟨hal-03100499⟩
  • Soufiane Ajana, Audrey Cougnard-Grégoire, Johanna Colijn, Bénédicte M.J. Merle, Timo Verzijden, et al.. Predicting Progression to Advanced Age-Related Macular Degeneration from Clinical, Genetic, and Lifestyle Factors Using Machine Learning. Ophthalmology: Journal of The American Academy of Ophthalmology, Elsevier, 2021, 128 (4), pp.587-597. ⟨10.1016/j.ophtha.2020.08.031⟩. ⟨hal-03100320⟩
  • Sophie Lefevre-Arbogast, Boris P. Hejblum, Catherine Helmer, C. Klose, Claudine Manach, et al.. Early signature in the blood lipidome associated with subsequent cognitive decline in the elderly: A case-control analysis nested within the Three-City cohort study. EBioMedicine, Elsevier, 2021, 64, pp.103216. ⟨10.1016/j.ebiom.2021.103216⟩. ⟨hal-03155026⟩
  • Lin Lin, Boris Hejblum. Bayesian mixture models for cytometry data analysis. Wiley Interdisciplinary Reviews: Computational Statistics, Wiley, In press, 13 (4), pp.e1535. ⟨10.1002/wics.1535⟩. ⟨hal-03100447⟩
  • Viviane Philipps, Boris P. Hejblum, Mélanie Prague, Daniel Commenges, Cécile Proust-Lima. Robust and Efficient Optimization Using a Marquardt-Levenberg Algorithm with R Package marqLevAlg. The R Journal, R Foundation for Statistical Computing, In press, ⟨10.32614/RJ-2021-089⟩. ⟨hal-03100489⟩
  • Harrison Zhang, Boris P. Hejblum, Griffin Weber, Nathan Palmer, Susanne Churchill, et al.. ATLAS: an automated association test using probabilistically linked health records with application to genetic studies. Journal of the American Medical Informatics Association, BMJ Publishing Group, 2021, 28 (12), pp.2582-2592. ⟨10.1093/jamia/ocab187⟩. ⟨hal-03478039⟩
  • Thomas Ferté, Sébastien Cossin, Thierry Schaeverbeke, Thomas Barnetche, Vianney Jouhet, et al.. Automatic phenotyping of electronical health record: PheVis algorithm. Journal of Biomedical Informatics, Elsevier, 2021, 117, pp.103746. ⟨10.1016/j.jbi.2021.103746⟩. ⟨hal-03100435⟩
  • Cédric Colas, Boris P. Hejblum, Sébastien Rouillon, Rodolphe Thiébaut, Pierre-Yves Oudeyer, et al.. EpidemiOptim: a Toolbox for the Optimization of Control Policies in Epidemiological Models. Journal of Artificial Intelligence Research, Association for the Advancement of Artificial Intelligence, 2021, 71, pp.479-515. ⟨10.1613/jair.1.12588⟩. ⟨hal-03099898v2⟩
  • Niyazi Acar, Bénédicte M. J. Merle, Soufiane Ajana, Zhiguo He, Stéphane Grégoire, et al.. Predicting the retinal content in omega‐3 fatty acids for age‐related macular‐degeneration. Clinical and Translational Medicine, Heidelberg : Springer-Verlag, 2021, 11 (7), pp.e404. ⟨10.1002/ctm2.404⟩. ⟨hal-03293612⟩
  • Yves Lévy, Aurélie Wiedemann, Boris P. Hejblum, Mélany Durand, Cécile Lefebvre, et al.. CD177, a specific marker of neutrophil activation, is associated with coronavirus disease 2019 severity and death. iScience, Elsevier, 2021, 24 (7), pp.102711. ⟨10.1016/j.isci.2021.102711⟩. ⟨hal-03477973⟩
  • Édouard Lhomme, Boris Hejblum, Christine Lacabaratz, Aurélie Wiedemann, Jean-Daniel Lelièvre, et al.. Analyzing cellular immunogenicity in vaccine clinical trials: a new statistical method including non-specific responses for accurate estimation of vaccine effect. Journal of Immunological Methods, Elsevier, 2020, 477, pp.112711. ⟨10.1016/j.jim.2019.112711⟩. ⟨hal-03161945v2⟩
  • Stephanie F Chan, Boris P. Hejblum, Abhishek Chakrabortty, Tianxi Cai. Semi-supervised estimation of covariance with application to phenome-wide association studies with electronic medical records data. Statistical Methods in Medical Research, SAGE Publications, 2020, 29 (2), pp.455-465. ⟨10.1177/0962280219837676⟩. ⟨hal-02425459⟩
  • Marine Gauthier, Denis Agniel, Rodolphe Thiébaut, Boris Hejblum. dearseq: a variance component score test for RNA-Seq differential analysis that effectively controls the false discovery rate. NAR Genomics and Bioinformatics, Oxford University Press, 2020, 2 (4), pp.lqaa093. ⟨10.1093/nargab/lqaa093⟩. ⟨hal-02138664⟩
  • Lila Bouadma, Aurélie Wiedemann, Juliette Patrier, Mathieu Surénaud, Paul-Henri Wicky, et al.. Immune Alterations in a Patient with SARS-CoV-2-Related Acute Respiratory Distress Syndrome. Journal of Clinical Immunology, Springer Verlag, 2020, 40, pp.1082-1092. ⟨10.1007/s10875-020-00839-x⟩. ⟨hal-03160737v2⟩
  • Aurélie Wiedemann, Emile Foucat, Hakim Hocini, Cécile Lefebvre, Boris Hejblum, et al.. Long-lasting severe immune dysfunction in Ebola virus disease survivors. Nature Communications, Nature Publishing Group, 2020, 11 (1), pp.3730. ⟨10.1038/s41467-020-17489-7⟩. ⟨hal-03160838v2⟩
  • Boris P. Hejblum, Chariff Alkhassim, Raphael Gottardo, François Caron, Rodolphe Thiébaut. Sequential Dirichlet Process Mixtures of Multivariate Skew t-distributions for Model-based Clustering of Flow Cytometry Data. Annals of Applied Statistics, Institute of Mathematical Statistics, 2019, 13 (1), pp.638-660. ⟨10.1214/18-AOAS1209⟩. ⟨hal-01579063⟩
  • Soufiane Ajana, Niyazi N. Acar, Lionel Brétillon, Boris Hejblum, Hélène Jacqmin-Gadda, et al.. Benefits of dimension reduction in penalized regression methods for high dimensional grouped data: a case study in low sample size. Bioinformatics, Oxford University Press (OUP), 2019, 35, pp.3628-3634. ⟨10.1093/bioinformatics/btz135⟩. ⟨hal-02425449⟩
  • Rodolphe Thiébaut, Boris P. Hejblum, Hakim Hocini, Henri Bonnabau, Jason Skinner, et al.. Gene Expression Signatures Associated With Immune and Virological Responses to Therapeutic Vaccination With Dendritic Cells in HIV-Infected Individuals. Frontiers in Immunology, Frontiers, 2019, 10, ⟨10.3389/fimmu.2019.00874⟩. ⟨hal-02267014v2⟩
  • Boris P. Hejblum, Chariff Alkhassim, Raphael Gottardo, François Caron, Rodolphe Thiébaut. Sequential Dirichlet process mixture of skew $t$-distributions for model-based clustering of flow cytometry data. Annals of Applied Statistics, Institute of Mathematical Statistics, 2019, 13 (1), pp.638-660. ⟨hal-03161057⟩
  • Boris P. Hejblum, Griffin M. Weber, Katherine P. Liao, Nathan P Palmer, Susanne Churchill, et al.. Probabilistic record linkage of de-identified research datasets with discrepancies using diagnosis codes. Scientific Data , Nature Publishing Group, 2019, 6, pp.180298. ⟨10.1038/sdata.2018.298⟩. ⟨hal-01942279⟩
  • Dorrain Low, Sophie Lefèvre-Arbogast, Raúl Dominguez-Gonzalez, Mireia Urpi Sarda, Pierre Micheau, et al.. Diet-Related Metabolites Associated with Cognitive Decline Revealed by Untargeted Metabolomics in a Prospective Cohort. Molecular Nutrition and Food Research, Wiley-VCH Verlag, 2019, 63 (18), pp.e1900177. ⟨10.1002/mnfr.201900177⟩. ⟨hal-02167524⟩
  • Sophie Lefèvre-Arbogast, David Gaudout, Julien Bensalem, Luc Letenneur, Jean-François Dartigues, et al.. Pattern of polyphenol intake and the long-term risk of dementia in older persons. Neurology, American Academy of Neurology, 2018, 90 (22), pp.e1979 - e1988. ⟨10.1212/WNL.0000000000005607⟩. ⟨hal-01887895⟩
  • Daniel Commenges, Chariff Alkhassim, Raphael Gottardo, Boris P. Hejblum, Rodolphe Thiébaut. cytometree: A binary tree algorithm for automatic gating in cytometry analysis. Cytometry Part A, Wiley, 2018, 93 (11), pp.1132-1140. ⟨10.1002/cyto.a.23601⟩. ⟨hal-03161874v2⟩
  • Boris P. Hejblum, Jing Cui, Lauren J. Lahey, Andrew Cagan, Jeffrey A. Sparks, et al.. Association between anti-citrullinated fibrinogen antibodies and coronary artery disease in rheumatoid arthritis. Arthritis Care & Research = Arthritis Care and Research, Wiley-Blackwell, 2018, 70 (7), pp.1113-1117. ⟨10.1002/acr.23444⟩. ⟨hal-01654403⟩
  • Matey Neykov, Boris P. Hejblum, Jennifer A Sinnott. Kernel machine score test for pathway analysis in the presence of semi-competing risks. Statistical Methods in Medical Research, SAGE Publications, 2018, Statistical Methods in Medical Research, 27 (4), pp.1099-1114. ⟨10.1177/0962280216653427⟩. ⟨hal-01395970⟩
  • Jennifer A Sinnott, Fiona Cai, Sheng Yu, Boris P. Hejblum, Chuan Hong, et al.. PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies. Journal of the American Medical Informatics Association, BMJ Publishing Group, 2018, ⟨10.1093/jamia/ocy056⟩. ⟨hal-01887930⟩
  • Anne Rechtien, Laura Richert, Hadrien Lorenzo, Gloria Martrus, Boris P. Hejblum, et al.. Systems Vaccinology Identifies an Early Innate Immune Signature as a Correlate of Antibody Responses to the Ebola Vaccine rVSV-ZEBOV. Cell Reports, Elsevier Inc, 2017, 20 (9), pp.2251 - 2261. ⟨10.1016/j.celrep.2017.08.023⟩. ⟨hal-01579246⟩
  • Katherine P. Liao, Jeffrey A Sparks, Boris P. Hejblum, I-Hsin Kuo, Jing Cui, et al.. Phenome-Wide Association Study of Autoantibodies to Citrullinated and Noncitrullinated Epitopes in Rheumatoid Arthritis. Arthritis & rheumatology, Wiley, 2017, 69 (4), pp.742 - 749. ⟨10.1002/art.39974⟩. ⟨hal-01654405⟩
  • Denis Agniel, Boris P. Hejblum. Variance component score test for time-course gene set analysis of longitudinal RNA-seq data. Biostatistics, Oxford University Press (OUP), 2017, Biostatistics, 18 (4), pp.589-604. ⟨10.1093/biostatistics/kxx005⟩. ⟨hal-01579077⟩
  • Benoit Liquet, Pierre Lafaye de Micheaux, Boris P. Hejblum, Rodolphe Thiébaut. Group and sparse group partial least square approaches applied in genomics context. Bioinformatics, Oxford University Press (OUP), 2016, 32 (1), pp.35-42. ⟨10.1093/bioinformatics/btv535⟩. ⟨hal-01288891⟩
  • Boris P. Hejblum, Jason Skinner, Rodolphe Thiébaut. Time-Course Gene Set Analysis for Longitudinal Gene Expression Data. PLoS Computational Biology, Public Library of Science, 2015, 11 (6), pp.e1004310. ⟨10.1371/journal.pcbi.1004310⟩. ⟨hal-01203446⟩
  • David Furman, Boris P. Hejblum, Noah Simon, Vladimir Jojic, Cornelia L. Dekker, et al.. Systems analysis of sex differences reveals an immunosuppressive role for testosterone in the response to influenza vaccination.. Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2014, 111 (2), pp.869-74. ⟨10.1073/pnas.1321060111⟩. ⟨inserm-00933693⟩
  • Rodolphe Thiébaut, Boris P. Hejblum, Laura Richert. L’analyse des « Big Data » en recherche clinique. Epidemiology and Public Health = Revue d'Epidémiologie et de Santé Publique, Elsevier Masson, 2014, 62 (1), pp.1-4. ⟨10.1016/j.respe.2013.12.021⟩. ⟨inserm-00933691⟩
  • Daniel Commenges, Boris P. Hejblum. Evidence synthesis through a degradation model applied to myocardial infarction.. Lifetime Data Analysis, Springer Verlag, 2013, 19 (1), pp.1-18. ⟨10.1007/s10985-012-9227-3⟩. ⟨inserm-00726036⟩

Poster communications4 documents

  • Cécile Delcourt, Soufiane Ajana, Olivier Berdeaux, Bénédicte Merle, Hélène Jacqmin-Gadda, et al.. Association of a predictor of retinal omega-3 polyunsaturated fatty acids with advanced age-related macular degeneration: the BLISAR project. Annual meeting of the association-for-research-in-vision-and-ophthalmology (ARVO), Apr 2019, Vancouver, Canada, United States. Association for Research in Vision and Ophthalmology, Investigative Ophthalmology and Visual Science, 60 (9), 1 p., 2019. ⟨hal-02736092⟩
  • Niyazi Acar, Soufiane Ajana, Olivier Berdeaux, Hélène Jacqmin-Gadda, Boris Hejblum, et al.. Identification of a circulating biomarker highly associated to retinal omega-3 polyunsaturated fatty acid content: the BLISAR project. Annual meeting of the association for research in vision and ophthalmology (ARVO), Apr 2019, Vancouver, Canada, United States. Association for Research in Vision and Ophthalmology, Investigative Ophthalmology and Visual Science, 60 (9), 1 p., 2019. ⟨hal-02737963⟩
  • Dorrain Low Yanwen, Sophie Lefèvre-Arbogast, Mélanie Pétéra, Pierre Micheau, Delphine Centeno, et al.. Identification of dietary modulators of cognitive function in ageing using metabolomics discovery. 8. International Conference on Polyphenols and Health ICPH 2017, Oct 2017, Québec, Canada. 2017. ⟨hal-01595015⟩
  • Dorrain Low Yanwen, Sophie Lefèvre-Arbogast, Mélanie Pétéra, Pierre Micheau, Delphine Centeno, et al.. Identification of dietary modulators of cognitive function in ageing using metabolomics discovery. Journée Scientifique du CRNH Auvergne, Nov 2017, Clermont-Ferrand, Canada. 2017, Journée Scientifique du CRNH Auvergne 2017. ⟨hal-01644048⟩

Books1 document

Patents1 document

  • Cecile Delcourt, Niyazi Acar, Lionel Brétillon, Soufiane Ajana, Hélène Jacqmin-Gadda, et al.. PRÉDICTION DU CONTENU DE LA RÉTINE EN ACIDES GRAS POLYINSATURÉS OMÉGA-3 À TRAVERS LE DOSAGE DE 7 MOLÉCULES D'ESTERS DE CHOLESTÉROL. France, Patent n° : WO2021058914; FR3100971. 2021. ⟨hal-03701136⟩

Preprints, Working Papers, ...7 documents

  • Laura Villain, Thomas Ferté, Rodolphe Thiébaut, Boris P. Hejblum. Gene Set Analysis for time-to-event outcome with the Generalized Berk–Jones statistic. 2021. ⟨hal-03478102⟩
  • Darawan Rinchai, Sara Deola, Gabriele Zoppoli, Basirudeen Syed Ahamed Kabeer, Sara Taleb, et al.. High temporal resolution transcriptomic profiling delineates distinct patterns of interferon response following Covid-19 mRNA vaccination and SARS-CoV2 infection. 2021. ⟨hal-03530948⟩
  • Marine Gauthier, Denis Agniel, Rodolphe Thiébaut, Boris P. Hejblum. Distribution-free complex hypothesis testing for single-cell RNA-seq differential expression analysis. 2021. ⟨hal-03478097⟩
  • Annabelle Collin, Boris P. Hejblum, Carole Vignals, Laurent Lehot, Rodolphe Thiébaut, et al.. Using Population Based Kalman Estimator to Model COVID-19 Epidemic in France: Estimating the Effects of Non-Pharmaceutical Interventions on the Dynamics of Epidemic. 2021. ⟨hal-03478094⟩
  • Mélanie Prague, Linda Wittkop, Quentin Clairon, Dan Dutartre, Rodolphe Thiébaut, et al.. Population modeling of early COVID-19 epidemic dynamics in French regions and estimation of the lockdown impact on infection rate. 2020. ⟨hal-02555100⟩
  • Paul Freulon, Jérémie Bigot, Boris Hejblum. CytOpT: Optimal Transport with Domain Adaptation for Interpreting Flow Cytometry data. 2020. ⟨hal-03100405⟩
  • Boris P. Hejblum, Kevin Kunzmann, Ennio Lavagnini, Anna Hutchinson, David Robertson, et al.. Realistic and Robust Reproducible Research for Biostatistics. 2020. ⟨hal-03100421⟩