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Exploring the flexibility of Pin1 peptidyl-prolyl isomerase using molecular dynamics simulations

Nawel Mele , Bogdan Iorga
9e Journées de la Société Française de Chémoinformatique (SFCi), Société Française de Chémoinformatique (SFCi), Nov 2019, Paris, France
Communication dans un congrès hal-04335974v1

Euphorbia dendroides Latex as Source of Jatrophane Esters: Their Isolation, Structural Analysis, Conformational Study and Anti-CHIKV Activity

M. Esposito , L-F Nothias-Scaglia , H. Nedev , J-F Gallard , P. Leyssen , et al.
Journal of Natural Products, 2016, 79 (11), pp.2873-2882. ⟨10.1021/acs.jnatprod.6b00644⟩
Article dans une revue hal-01591218v1
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The effect of mutation on an aggregation-prone protein: An in vivo, in vitro, and in silico analysis

N. Guthertz , R. van der Kant , R. Martinez , Y. Xu , C. Trinh , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2022, 119 (22), pp.e2200468119. ⟨10.1073/pnas.2200468119⟩
Article dans une revue hal-03779985v1

In silico prediction of β-lactamase hydrolysis efficiency: Finding the right balance between kinetic and thermodynamic terms

Agustin Zavala , Saoussen Oueslati , Edithe Selwa , Eddy Elisée , Thierry Naas , et al.
256th ACS National Meeting, American Chemical Society (ACS), Aug 2018, Boston (MA), United States
Communication dans un congrès hal-04336608v1

Chapter 8. Computational Approaches to Ionotropic Glutamate Receptors

Ranjit Vijayan , Bogdan Iorga , Philip Biggin
Molecular Simulations and Biomembranes - From Biophysics to Function, pp.203-224, 2010, ⟨10.1039/9781849732154-00203⟩
Chapitre d'ouvrage istex hal-03161536v1

Activation mechanism of carbonic anhydrases explored by molecular dynamics simulations

Eddy Elisée , Bogdan Iorga
11th International Conference on Carbonic Anhydrases, Jun 2018, Bucharest, Romania
Communication dans un congrès hal-04336011v1
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Evaluation of Clostridium botulinum A5 neurotoxin actions in vivo and ex vivo at the mouse skeletal neuromuscular junction

Évelyne Benoit , Aurélie Couesnon , Bogdan I Iorga , Michel R. Popoff , Jordi Molgó
RT28 – 28th Meeting of the French Society of Toxinology – Toxins: What’s up, Doc?, Nov 2022, Paris, France
Poster de conférence hal-04472746v1
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LMB-1 producing Citrobacter freundii from Argentina, a novel player in the field of MBLs

Laura Dabos , Carlos Rodriguez , Marcela Nastro , Laurent Dortet , Rémy Bonnin , et al.
International Journal of Antimicrobial Agents, 2020, 55 (2), pp.105857. ⟨10.1016/j.ijantimicag.2019.11.014⟩
Article dans une revue hal-02470562v1
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Optimization of the rapid carbapenem inactivation method for use with AmpC hyperproducers-authors’ response

Mădălina Maria Muntean , Andrei-Alexandru Muntean , François Guerin , Vincent Cattoir , Elodie Creton , et al.
Journal of Antimicrobial Chemotherapy, 2022, 77 (4), pp.1208-1209. ⟨10.1093/jac/dkac058⟩
Article dans une revue hal-03595581v1
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Controlled monohalogenation of phosphonates Part IV. Selective synthesis of monohalomethylenediphosphonates

Bogdan Iorga , Philippe Savignac
Journal of Organometallic Chemistry, 2001, 624 (1-2), pp.203-207. ⟨10.1016/s0022-328x(00)00889-5⟩
Article dans une revue istex hal-03161510v1
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Cyanomethylene-bis(phosphonate) as ditopical ligand: stepwise formation of a 2-D heterometallic Fe(III)-Ag(I) coordination network

Catalin Maxim , Diana Branzea , Magali Allain , Marius Andruh , Rodolphe Clérac , et al.
CrystEngComm, 2012, 14 (9), pp.3096-3102. ⟨10.1039/c2ce06261e⟩
Article dans une revue hal-00686474v1
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Carbonic Anhydrase Activators: Synthesis of High Affinity Isozymes I, II and IV Activators, Derivatives of 4-(4-Tosylureido-Amino Acyl)Ethyl-1 H -Imidazole (Histamine Derivatives)

Andrea Scozzafava , Bogdan Iorga , Claudiu T. Supuran
Journal of Enzyme Inhibition and Medicinal Chemistry, 2000, 15 (2), pp.139-161. ⟨10.1080/14756360009030347⟩
Article dans une revue hal-03161496v1
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Oncogenic CALR mutant C-terminus mediates dual binding to the thrombopoietin receptor triggering complex dimerization and activation

Nicolas Papadopoulos , Audrey Nédélec , Allison Derenne , Teodor Asvadur Şulea , Christian Pecquet , et al.
Nature Communications, 2023, 14 (1), pp.1881. ⟨10.1038/s41467-023-37277-3⟩
Article dans une revue hal-04060724v1
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SAMPL6: calculation of macroscopic pKa values from ab initio quantum mechanical free energies

Edithe Selwa , Ian Kenney , Oliver Beckstein , Bogdan Iorga
Journal of Computer-Aided Molecular Design, 2018, 32 (10), pp.1203-1216. ⟨10.1007/s10822-018-0138-6⟩
Article dans une revue hal-02119827v1
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Ligandbook — an online repository for small and drug-like molecule force field parameters

Jan Domański , Oliver Beckstein , Bogdan Iorga
Bioinformatics, 2017, 33 (11), pp.1747-1749. ⟨10.1093/bioinformatics/btx037⟩
Article dans une revue hal-02114186v1

2- or 3-imidazolines as carbapenemases inhibitors

Kevin Cariou , Robert H. Dodd , Eugenie Romero , Mohamed Benchekroun , Bogdan I. Iorga , et al.
France, Patent n° : WO/2018/162670. 2018
Brevet hal-04489573v1

Cyclic imine neurotoxins acting on muscarinic and nicotinic acetylcholine receptors

Jordi Molgo , Rómulo Aráoz , Bogdan I Iorga , Evelyne Benoit , Armen Zakarian
Rossini, G. P. Toxins and biologically active compounds from microalgae. Vol.2, CRC Press, pp.116-146, 2014, Print ISBN: 978-1-4822-3146-5 eBook ISBN: 978-1-4822-3147-2. ⟨10.1201/b16806-7⟩
Chapitre d'ouvrage hal-00994808v1
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Mutational analysis of the Qi-site proton pathway in yeast cytochrome bc1 complex

Zehua Song , Yangfeng Hu , Bogdan I. Iorga , Cindy Vallières , Nicholas Fisher , et al.
Biochemical and Biophysical Research Communications, 2020, 523 (3), pp.615-619. ⟨10.1016/j.bbrc.2019.12.102⟩
Article dans une revue hal-02445554v1

The cyclic imine Prorocentrolide-A obtained from cultured Japanese Prorocentrum lima dinoflagellates target muscle- and neuronal-type nicotinic acetylcholine receptors

Muriel Amar , Rómulo Aráoz , Bogdan Iorga , Takeshi Yasumoto , Denis Servent , et al.
Toxicon, 2018, 149, pp.103-104. ⟨10.1016/j.toxicon.2018.02.029⟩
Article dans une revue hal-03164771v1

The challenge of rapid and precise identification of resistance determinants with low sequence identity to known resistance genes

Bogdan Iorga
Applied Bioinformatics in Life Sciences (2nd edition), Mar 2018, Louvain, Belgium
Poster de conférence hal-04336364v1

Automated Analysis of Conformational Flexibility in Small Molecules Using SAMPL7 Physical Properties Challenge Datasets from Alchemical Free Energy Simulations with MDPO

Cade Duckworth , Shujie Fan , Alia Lescoulie , Bogdan Iorga , Oliver Beckstein
Four Corners Section 2022 Meeting, Oct 2022, Albuquerque (NM), United States
Communication dans un congrès hal-04336729v1

Conformational and pharmacophoric features within the cyclic imine phycotoxin group

R. Aráoz , J. Molgó , Bogdan Iorga
Toxicon, 2013, 75, pp.218. ⟨10.1016/j.toxicon.2013.08.036⟩
Article dans une revue istex hal-03161669v1

Assay development and high-throughput screening to identify PDE2A activators to treat heart failure

Nicolas Claire , Shittl Julia , Pertuiset Claire , Mehel Hind , Courilleau Delphine , et al.
Archives of Cardiovascular Diseases Supplements, 2014, 6, pp.43. ⟨10.1016/s1878-6480(14)71379-5⟩
Article dans une revue hal-03161680v1

Spiroimine toxins in complex with nicotinic acetylcholine receptors: structure and dynamics

Romulo Araoz , Laurent Chabaud , Catherine Guillou , Jordi Molgó , Bogdan Iorga
Biophysical Journal, 2011, 100 (3, suppl1), pp.347a. ⟨10.1016/j.bpj.2010.12.2093⟩
Article dans une revue hal-00647637v1
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Prediction of octanol-water partition coefficients for the SAMPL6-logP molecules using molecular dynamics simulations with OPLS-AA, AMBER and CHARMM force fields

Shujie Fan , Bogdan Iorga , Oliver Beckstein
Journal of Computer-Aided Molecular Design, 2020, 34 (5), pp.543-560. ⟨10.1007/s10822-019-00267-z⟩
Article dans une revue hal-02566072v1
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Class C β-Lactamases: Molecular Characteristics

Alain Philippon , Guillaume Arlet , Roger Labia , Bogdan Iorga
Clinical Microbiology Reviews, 2022, 35 (3), pp.e0015021. ⟨10.1128/cmr.00150-21⟩
Article dans une revue hal-03666203v1

Metallo-beta-lactamases in the BLDB

Bogdan Iorga
2nd JPIAMR EPIC Alliance Workshop, JPIAMR EPIC Alliance, Jul 2023, Le Kremlin Bicêtre, France
Communication dans un congrès hal-04334652v1
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A molecular plugin rescues GroEL/ES substrates from pre-folding oxidation

Emile Dupuy , Sander van der Verren , Jiusheng Lin , Mark Wilson , Alix Dachsbeck , et al.
2022
Pré-publication, Document de travail hal-03806896v1
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Bêta-lactamases BLSE de type CTX-M

Alain Philippon , Guillaume Arlet , Bogdan Iorga
Bulletin de l'Académie Vétérinaire de France, 2022, 175, pp.256-265. ⟨10.3406/bavf.2022.71009⟩
Article dans une revue hal-04230554v1

Highlights from recent SAMPL participations

Hristo Nedev , Shujie Fan , Ian M Kenney , Oliver Beckstein , Bogdan Iorga
16th German Conference on Cheminformatics and SAMPL Satellite Workshop - Virtual Edition, Division Computers in Chemistry (CIC) of the German Chemical Society (GDCh), Nov 2020, Mainz, Germany
Communication dans un congrès hal-04335456v1