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Inferring cell cycle phases from a partially temporal network of protein interactions

 Maxime Lucas , Arthur Morris , Alex Townsend-Teague , Laurent Tichit , Bianca Habermann , et al.
Cell Reports Methods, 2023, 3 (2), pp.100397. ⟨10.1016/j.crmeth.2023.100397⟩
Article dans une revue hal-04144618v1

Prednisolone rescues Duchenne muscular dystrophy phenotypes in human pluripotent stem cell–derived skeletal muscle in vitro

 Ziad Al Tanoury , John Zimmerman , Jyoti Rao , Daniel Sieiro , Harold Mcnamara , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (28), pp.e2022960118. ⟨10.1073/pnas.2022960118⟩
Article dans une revue hal-03451593v1
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RNfuzzyApp: an R shiny RNA-seq data analysis app for visualisation, differential expression analysis, time-series clustering and enrichment analysis

 Margaux Haering , Bianca Habermann
F1000Research, 2021, 10, pp.654. ⟨10.12688/f1000research.54533.2⟩
Article dans une revue hal-03451631v1
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Complete Genome Assembly of Myxococcus xanthus Strain DZ2 Using Long High-Fidelity (HiFi) Reads Generated with PacBio Technology

 Rikesh Jain , Bianca Habermann , Tâm Mignot
Microbiology Resource Announcements, 2021, 10 (28), ⟨10.1128/MRA.00530-21⟩
Article dans une revue hal-03451605v1
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AnnoMiner is a new web-tool to integrate epigenetics, transcription factor occupancy and transcriptomics data to predict transcriptional regulators

 Arno Meiler , Fabio Marchiano , Margaux Haering , Manuela Weitkunat , Frank Schnorrer , et al.
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-94805-1⟩
Article dans une revue hal-03445086v1
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BCL-XL blockage in TNBC models confers vulnerability to inhibition of specific cell cycle regulators

 Olivier Castellanet , Fahmida Ahmad , Yaron Vinik , Gordon Mills , Bianca Habermann , et al.
Theranostics, 2021, 11 (19), pp.9180-9197. ⟨10.7150/thno.60503⟩
Article dans une revue hal-03429754v1
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SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data

 Roman Prytuliak , Friedhelm Pfeiffer , Bianca Hermine Habermann
BMC Bioinformatics, 2018, 19 (1), pp.24. ⟨10.1186/s12859-018-2020-x⟩
Article dans une revue hal-02066103v1
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The Hippo pathway controls myofibril assembly and muscle fiber growth by regulating sarcomeric gene expression

 Aynur Kaya-Çopur , Fabio Marchiano , Marco y Hein , Daniel Alpern , Julie Russeil , et al.
eLife, 2021, 10, ⟨10.7554/elife.63726⟩
Article dans une revue hal-03454329v1
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The mitoXplorer 2.0 update: integrating and interpreting mitochondrial expression dynamics within a cellular context

 Fabio Marchiano , Margaux Haering , Bianca Hermine Habermann
Nucleic Acids Research, 2022, 50 (W1), pp.W490-W499. ⟨10.1093/nar/gkac306⟩
Article dans une revue hal-03769539v1
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Tension-driven multi-scale self-organisation in human iPSC-derived muscle fibers

 Qiyan Mao , Achyuth Acharya , Alejandra Rodríguez-Delarosa , Fabio Marchiano , Benoit Dehapoit , et al.
2021
Pré-publication, Document de travail hal-03445081v1
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Evolution of mechanisms controlling epithelial morphogenesis across animals: new insights from dissociation-reaggregation experiments in the sponge Oscarella lobularis

 Amélie Vernale , Maria Mandela Prünster , Fabio Marchianò , Henry Debost , Nicolas Brouilly , et al.
BMC Ecology and Evolution, 2021, 21 (1), pp.160. ⟨10.1186/s12862-021-01866-x⟩
Article dans une revue hal-03438191v1
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A Tad-like apparatus is required for contact-dependent prey killing in predatory social bacteria

 Sofiene Seef , Julien Herrou , Paul de Boissier , Laetitia My , Gael Brasseur , et al.
eLife, 2021, 10, ⟨10.7554/eLife.72409⟩
Article dans une revue hal-03365495v1
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Tension-driven multi-scale self-organisation in human iPSC-derived muscle fibers

 Qiyan Mao , Achyuth Acharya , Alejandra Rodríguez-Delarosa , Fabio Marchiano , Benoit Dehapiot , et al.
eLife, 2022, 11, ⟨10.7554/elife.76649⟩
Article dans une revue hal-03873293v1
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Camk2a-Cre and Tshz3 Expression in Mouse Striatal Cholinergic Interneurons: Implications for Autism Spectrum Disorder

 Xavier Caubit , Elise Arbeille , Dorian Chabbert , Florence Desprez , Imane Messak , et al.
Frontiers in Genetics, 2021, 12, ⟨10.3389/fgene.2021.683959⟩
Article dans une revue hal-03388202v1
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Introducing the novel Cytoscape app TimeNexus to analyze time-series data using temporal MultiLayer Networks (tMLNs)

 Michaël Pierrelée , Ana Reynders , Fabrice Lopez , Aziz Moqrich , Laurent Tichit , et al.
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-93128-5⟩
Article dans une revue hal-03358832v1
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