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Independent set reconfiguration: general and RNA-focused parameterized algorithms

Théo Boury , Laurent Bulteau , Bertrand Marchand , Yann Ponty
2023
Pré-publication, Document de travail hal-04094405v1
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Designing molecular RNA switches with Restricted Boltzmann machines

Jorge Fernandez-De-Cossio-Diaz , Pierre Hardouin , Francois-Xavier Lyonnet Du Moutier , Andrea Di Gioacchino , Bertrand Marchand , et al.
2023
Pré-publication, Document de travail hal-04294884v1
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Tree Diet: Reducing the Treewidth to Unlock FPT Algorithms in RNA Bioinformatics

Bertrand Marchand , Yann Ponty , Laurent Bulteau
WABI 2021 - 21st Workshop on Algorithms in Bioinformatics, 2021, Paris, France
Communication dans un congrès hal-03206132v1
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Automated design of dynamic programming schemes for RNA folding with pseudoknots

Bertrand Marchand , Sebastian Will , Sarah Berkemer , Laurent Bulteau , Yann Ponty
WABI 2022 - 22nd Workshop on Algorithms in Bioinformatics, Sep 2022, Potsdam, Germany
Communication dans un congrès hal-03676377v2
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Automated design of dynamic programming schemes for RNA folding with pseudoknots

Bertrand Marchand , Sebastian Will , Sarah Berkemer , Yann Ponty , Laurent Bulteau
Algorithms for Molecular Biology, 2023, 18 (1), pp.18. ⟨10.1186/s13015-023-00229-z⟩
Article dans une revue hal-04103565v1
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Tree Diet: Reducing the Treewidth to Unlock FPT Algorithms in RNA Bioinformatics

Bertrand Marchand , Yann Ponty , Laurent Bulteau
Algorithms for Molecular Biology, 2022, 17 (1), pp.8. ⟨10.1186/s13015-022-00213-z⟩
Article dans une revue hal-03608412v2
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Infrared: a declarative tree decomposition-powered framework for bioinformatics

Hua-Ting Yao , Bertrand Marchand , Sarah J. Berkemer , Yann Ponty , Sebastian Will
Algorithms for Molecular Biology, 2024, ⟨10.1186/s13015-024-00258-2⟩
Article dans une revue hal-04211173v2