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SCHNAPPs -Single Cell sHiNy APPlication(s)

 Bernd Jagla , Vincent Rouilly , Michel Puceat , Milena Hasan
[Research Report] Institut Pasteur, Paris. 2020
Rapport hal-02868876v1

A putative regulatory genetic locus modulates virulence in the pathogen Leptospira interrogans

 Azad Eshgi , Jérôme Becam , Ambroise Lambert , Odile Sismeiro , Marie-Agnès Dillies , et al.
Infection and Immunity, 2014, 82 (6), pp.2542-2552. ⟨10.1128/IAI.01803-14⟩
Article dans une revue hal-01163058v1
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Repressor activity of the RpoS/σS-dependent RNA polymerase requires DNA binding

 Corinne Levi-Meyrueis , Véronique Monteil , Odile Sismeiro , Marie-Agnès Dillies , Annie Kolb , et al.
Nucleic Acids Research, 2015, 43 (3), pp.1456 - 1468. ⟨10.1093/nar/gku1379⟩
Article dans une revue pasteur-01370752v1
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Comparative analysis of viral RNA signatures on different RIG-I-like receptors.

 Raul y Sanchez David , Chantal Combredet , Odile Sismeiro , Marie Dillies , Bernd Jagla , et al.
eLife, 2016, 5, pp.e11275. ⟨10.7554/eLife.11275⟩
Article dans une revue hal-01483406v1
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Molecular signature of the imprintosome complex at the mating-type locus in fission yeast.

 Célia Raimondi , Bernd Jagla , Caroline Proux , Hervé Waxin , Serge Gangloff , et al.
Microbial Cell , 2018, 5 (4), pp.169 - 183. ⟨10.15698/mic2018.04.623⟩
Article dans une revue pasteur-01868255v1
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Standardized high‐dimensional spectral cytometry protocol and panels for whole blood immune phenotyping in clinical and translational studies

 Tom Dott , Slobodan Culina , Rene Chemali , Cedric Ait Mansour , Florian Dubois , et al.
Cytometry Part A, In press, ⟨10.1002/cyto.a.24801⟩
Article dans une revue pasteur-04221005v1

GH16 and GH81 family β-(1,3)-glucanases in Aspergillus fumigatus are essential for conidial cell wall morphogenesis.

 Isabelle Mouyna , Vishukumar Aimanianda , Lukas Hartl , Marie-Christine Prévost , Odile O. Sismeiro , et al.
Cellular Microbiology, 2016, 18 (9), pp.1285 - 1293. ⟨10.1111/cmi.12630⟩
Article dans une revue pasteur-01704672v1
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OCT4-mediated inflammation induces cell reprogramming at the origin of cardiac valve development and calcification

 Emily Farrar , Emilye Hiriart , Ablajan Mahmut , Bernd Jagla , David Peal , et al.
Science Advances , 2021, 7 (45), pp.eabf7910. ⟨10.1126/sciadv.abf7910⟩
Article dans une revue hal-03662357v1
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Birth, cell fate and behavior of progenitors at the origin of the cardiac mitral valve

 Batoul Farhat , Ignacio Bordeu , Bernd Jagla , Stéphanie Ibrahim , Sonia Stefanovic , et al.
Developmental Cell, 2024, ⟨10.1016/j.devcel.2023.12.006⟩
Article dans une revue hal-04388535v1
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SpdC, a novel virulence factor, controls histidine kinase activity in Staphylococcus aureus

 Olivier Poupel , Caroline Proux , Bernd Jagla , Tarek Msadek , Sarah Dubrac
PLoS Pathogens, 2018, 14 (3), pp.e1006917. ⟨10.1371/journal.ppat.1006917⟩
Article dans une revue pasteur-02613930v1
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SCHNAPPs - Single Cell sHiNy APPlication(s)

 Bernd Jagla , Valentina Libri , Claudia Chica , Vincent Rouilly , Sebastien Mella , et al.
Journal of Immunological Methods, 2021, 499, pp.113176. ⟨10.1016/j.jim.2021.113176⟩
Article dans une revue pasteur-03478264v1

Adaptation in Toxic Environments: Arsenic Genomic Islands in the Bacterial Genus Thiomonas

 Kelle Freel , Martin Krueger , Julien Farasin , Céline Brochier-Armanet , Valérie Barbe , et al.
PLoS ONE, 2015, 10 (9), pp.0139011. ⟨10.1371/journal.pone.0139011⟩
Article dans une revue cea-01825879v1

Massive Activation of Archaeal Defense Genes during Viral Infection.

 Tessa E F Quax , Marleen Voet , Odile Sismeiro , Marie-Agnes Dillies , Bernd Jagla , et al.
Journal of Virology, 2013, 87 (15), pp.8419-28. ⟨10.1128/JVI.01020-13⟩
Article dans une revue hal-00848168v1
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Reactivation of the Epicardium at the Origin of Myocardial Fibro-Fatty Infiltration During the Atrial Cardiomyopathy

 Nadine Suffee , Thomas Moore-Morris , Bernd Jagla , Nathalie Mougenot , Gilles Dilanian , et al.
Circulation Research, 2020, 126 (10), pp.1330-1342. ⟨10.1161/CIRCRESAHA.119.316251⟩
Article dans une revue inserm-02546350v1

A Putative Regulatory Genetic Locus Modulates Virulence in the Pathogen Leptospira interrogans

 Ambroise Lambert , Azad Eshghi , Jérôme Becam , Odile Sismeiro , Marie-Agnès Dillies , et al.
Infection and Immunity, 2014, 82 (6), pp.2542-2552. ⟨10.1128/IAI.01803-14⟩
Article dans une revue hal-03514478v1
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Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns

 Viviane Balloy , Hugo Varet , Marie-Agnès Dillies , Caroline Proux , Bernd Jagla , et al.
PLoS ONE, 2015, 10 (10), pp.e0140979. ⟨10.1371/journal.pone.0140979⟩
Article dans une revue hal-01277894v1
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Comparison of biofilm formation and motility processes in arsenic-resistant Thiomonas spp. strains revealed divergent response to arsenite

 Julien Farasin , Sandrine Koechler , Hugo Varet , Julien Deschamps , Marie-Agnès Dillies , et al.
Microbial Biotechnology, 2017, Thematic Issue on Biofilms: Microbial Works of Art, 10 (4), pp.789-803. ⟨10.1111/1751-7915.12556/pdf⟩
Article dans une revue insu-01461688v1
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Quantitative genetic analysis deciphers the impact of cis and trans regulation on cell-to-cell variability in protein expression levels

 Michael D Morgan , Etienne Patin , Bernd Jagla , Milena Hasan , Lluis Quintana-Murci , et al.
PLoS Genetics, 2020, 16 (3), pp.e1008686. ⟨10.1371/journal.pgen.1008686⟩
Article dans une revue pasteur-02549831v1
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Expanding the RpoS/σS-network by RNA sequencing and identification of σS-controlled small RNAs in Salmonella.

 Corinne Lévi-Meyrueis , Véronique Monteil , Odile Sismeiro , Marie-Agnès Dillies , Marc Monot , et al.
PLoS ONE, 2014, 9 (5), pp.e96918. ⟨10.1371/journal.pone.0096918⟩
Article dans une revue pasteur-01370762v1
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Salivary gland epithelial cells from patients with Sjögren's syndrome induce B-lymphocyte survival and activation

 Elodie Riviere , Juliette Pascaud , Nicolas Tchitchek , Saida Boudaoud , Audrey Paoletti , et al.
Annals of the Rheumatic Diseases, 2020, 79 (11), pp.1468-1477. ⟨10.1136/annrheumdis-2019-216588⟩
Article dans une revue inserm-03150054v1
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Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation

 Evelyne Krin , Sebastian Aguilar Pierlé , Odile Sismeiro , Bernd Jagla , Marie-Agnès Dillies , et al.
BMC Genomics, 2018, 19 (1), pp.373. ⟨10.1186/s12864-018-4716-8⟩
Article dans une revue pasteur-02562431v1
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Human pre-valvular endocardial cells derived from pluripotent stem cells recapitulate cardiac pathophysiological valvulogenesis

 Tui Neri , Emilye Hiriart , Patrick P. Van Vliet , Emilie Faure , Russell A. Norris , et al.
Nature Communications, 2019, 10, pp.1929. ⟨10.1038/s41467-019-09459-5⟩
Article dans une revue hal-02461454v1

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

 Marie-Agnès Dillies , Andrea Rau , Julie Aubert , Christelle Hennequet-Antier , Marine Jeanmougin , et al.
Briefings in Bioinformatics, 2012, 14 (6), pp.671-683. ⟨10.1093/bib/bbs046⟩
Article dans une revue hal-00782486v1
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