Nombre de documents

42

CV de Bernard OFFMANN


Article dans une revue20 documents

  • Swapnil Mahajan, Alexandre De Brevern, Bernard Offmann, Narayanaswamy Srinivasan. Correlation between local structural dynamics of proteins inferred from NMR ensembles and evolutionary dynamics of homologues of known structure.: Inherent and evolutionary structural dynamics. Journal of Biomolecular Structure and Dynamics, Taylor & Francis: STM, Behavioural Science and Public Health Titles, 2014, 32 (5), pp.751-8. <10.1080/07391102.2013.789989>. <inserm-00926204>
  • Swapnil Mahajan, Garima Agarwal, Mohammed Iftekhar, Bernard Offmann, Alexandre De Brevern, et al.. DoSA: Database of Structural Alignments.. Database (Weston, Conn.) (Weston, Conn.), Oxford Journals, 2013, 2013, pp.bat048. <10.1093/database/bat048>. <inserm-00926452>
  • Chilamakuri Cs Reddy, Sane Sudha Rani, Bernard Offmann, R. Sowdhamini. Systematic search for putative new domain families in Mycoplasma gallisepticum genome. BMC Research Notes, BioMed Central, 2010, 3 (1), pp.1--10. <10.1186/1756-0500-3-98>. <hal-01198471>
  • Agnel Joseph, Garima Agarwal, Swapnil Mahajan, Jean-Christophe Gelly, Lakshmipuram Swapna, et al.. A short survey on protein blocks.. Biophysical Reviews, 2010, 2 (3), pp.137-147. <10.1007/s12551-010-0036-1>. <inserm-00512823>
  • René Groben, Dimitrios Kaloudas, Christine A. Raines, Bernard Offmann, Stephen Maberly, et al.. Comparative sequence analysis of CP12, a small protein involved in the formation of a Calvin cycle complex in photosynthetic organisms. Photosynthesis Research, Springer Verlag, 2010, 3 (103), pp.183-194. <hal-00677532>
  • R. Groben, D. Kaloudas, C.A. Raines, Bernard Offmann, Stephen Maberly, et al.. Comparative sequence analysis of CP12, a small protein involved in the formation of a Calvin cycle complex in photosynthetic organisms. Photosynthesis Research, Springer Verlag, 2010, 103 (3), pp.183-194. <hal-00677735>
  • Manoj Tyagi, Aurélie Bornot, Bernard Offmann, Alexandre De Brevern. Analysis of loop boundaries using different local structure assignment methods.: loop boundary behaviors. Protein Science, Wiley, 2009, 18 (9), pp.1869-81. <10.1002/pro.198>. <inserm-00392504>
  • Sankaran Sandhya, Saane Sudha Rani, Barah Pankaj, Madabosse Kande Govind, Bernard Offmann, et al.. Length Variations amongst Protein Domain Superfamilies and Consequences on Structure and Function. PLoS ONE, Public Library of Science, 2009, 4 (3), pp.e4981. <10.1371/journal.pone.0004981>. <hal-01198473>
  • Manoj Tyagi, Aurélie Bornot, Bernard Offmann, Alexandre De Brevern. Protein short loop prediction in terms of a structural alphabet.: protein short loops prediction. Computational Biology and Chemistry, Elsevier, 2009, 33 (4), pp.329-33. <10.1016/j.compbiolchem.2009.06.002>. <inserm-00396485>
  • Chilamakuri Cs Reddy, Khader Shameer, Bernard Offmann, Ramanathan Sowdhamini. PURE: A webserver for the prediction of domains in unassigned regions in proteins. BMC Bioinformatics, BioMed Central, 2008, 9 (1), pp.1--8. <10.1186/1471-2105-9-281>. <hal-01198474>
  • Ratna R. Thangudu, Malini Manoharan, N. Srinivasan, Frédéric Cadet, R. Sowdhamini, et al.. Analysis on conservation of disulphide bonds and their structural features in homologous protein domain families. BMC Structural Biology, BioMed Central, 2008, 8 (1), pp.1--22. <10.1186/1472-6807-8-55>. <hal-01198476>
  • Sankaran Sandhya, Barah Pankaj, Kande Madabosse Govind, Bernard Offmann, Narayanaswamy Srinivasan, et al.. CUSP: an algorithm to distinguish structurally conserved and unconserved regions in protein domain alignments and its application in the study of large length variations. BMC Structural Biology, BioMed Central, 2008, 8 (1), pp.1--14. <10.1186/1472-6807-8-28>. <hal-01198475>
  • Aurélie Bornot, Bernard Offmann, Alexandre De Brevern. How flexible protein structures are? New questions on the protein structure plasticity.. BioForum Europe, 2007, pp.24. <inserm-00189079>
  • Ratna R. Thangudu, Priyanka Sharma, N. Srinivasan, Bernard Offmann. Analycys: A database for conservation and conformation of disulphide bonds in homologous protein domains. Proteins - Structure, Function and Bioinformatics, Wiley, 2007, 67 (2), pp.255--261. <10.1002/prot.21318>. <hal-01198478>
  • Manoj Tyagi, Alexandre De Brevern, Narayanaswamy Srinivasan, Bernard Offmann. Protein structure mining using a structural alphabet.: Protein structure mining using a structural alphabet. Proteins - Structure, Function and Bioinformatics, Wiley, 2007, 71 (2), pp.920-937. <10.1002/prot.21776>. <inserm-00176443>
  • Bernard Offmann, Manoj Tyagi, Alexandre De Brevern. Local Protein Structures. Current Bioinformatics, 2007, 2, pp.165-202. <inserm-00175058>
  • Manoj Tyagi, Venkataraman Gowri, Narayanaswamy Srinivasan, Alexandre De Brevern, Bernard Offmann. A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications.. Proteins - Structure, Function and Bioinformatics, Wiley, 2006, 65 (1), pp.32-9. <10.1002/prot.21087>. <inserm-00133760>
  • Fabrice Gardebien, Rajesh R Thangudu, Brigitte Gontero, Bernard Offmann. Construction of a 3D model of CP12, a protein linker.. J Mol Graph Model, 2006, 25 (2), pp.186-95. <10.1016/j.jmgm.2005.12.003>. <hal-00097473>
  • Fabrice Gardebien, Rajesh R Thangudu, B. Gontero, Bernard Offmann. Construction of a 3D model of CP12, a protein linker. Journal of Molecular Graphics and Modelling, Elsevier, 2006, 25, pp.186-195. <hal-00347315>
  • Manoj Tyagi, Priyanka Sharma, C. S. Swamy, Frédéric Cadet, N. Srinivasan, et al.. Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet.. Nucleic Acids Research, Oxford University Press (OUP): Policy C - Option B, 2006, 34 (Web Server issue), pp.W119-23. <10.1093/nar/gkl199>. <inserm-00133751>

Poster3 documents

  • Magali Berland, Bernard Offmann, Isabelle André, Magali Remaud-Siméon, Philippe Charton. A new method for spectral characterization of protein families from sequence information using Fourier Transform. 8th IAPR International Conference on Pattern Recognition in Bioinformatics, Jun 2013, Nice, France. 2013. <hal-01187204>
  • Magali Berland, Bernard Offmann, Isabelle André, Magali Remaud-Siméon, Philippe Charton. Prediction of enzyme activity: Implementation of the ProSAR method and assessment on experimental dataset from different sources. 2nd symposium Protein Engineering for Biocatalysis, Aug 2012, Greifswald, Germany. 2012. <hal-01188006>
  • Magali Berland, Philippe Charton, Magali Remaud-Siméon, Bernard Offmann. ProSAR: Implementation and assessment of an approach based on a genetic algorithm towards directed evolution of enzymes. Congrès annuel de la Société française de biochimie et biologie moléculaire, Oct 2011, Ax-les-Thermes, France. 2011. <hal-01188016>

Image16 documents

  • Bernard Offmann. TP de Biochimie (Enzymologie). Photography. Terre Sainte, France. 2009. <medihal-00459236>
  • Bernard Offmann. TP de Biochimie (Enzymologie). Photography. Terre Sainte, France. 2009. <medihal-00459237>
  • Bernard Offmann. TP de Biochimie (Enzymologie). Photography. Terre Sainte, France. 2009. <medihal-00459239>
  • Bernard Offmann. TP de Biochimie (Enzymologie). Photography. Terre Sainte, France. 2009. <medihal-00459241>
  • Bernard Offmann. TP de Biochimie (Enzymologie). Photography. Terre Sainte, France. 2009. <medihal-00459242>
  • Bernard Offmann. TP de Biochimie (Enzymologie). Photography. Terre Sainte, France. 2009. <medihal-00459240>
  • Bernard Offmann. TP de Biochimie (Enzymologie). Photography. Terre Sainte, France. 2009. <medihal-00459251>
  • Bernard Offmann. TP de Biochimie (Enzymologie). Photography. Terre Sainte, France. 2009. <medihal-00459238>
  • Bernard Offmann. TP de Biochimie (Enzymologie). Photography. Terre Sainte, France. 2009. <medihal-00459248>
  • Bernard Offmann. TP de Biochimie (Enzymologie). Photography. Terre Sainte, France. 2009. <medihal-00459243>
  • Bernard Offmann. TP de Biochimie (Enzymologie). Photography. Terre Sainte, France. 2009. <medihal-00459244>
  • Bernard Offmann. TP de Biochimie (Enzymologie). Photography. Terre Sainte, France. 2009. <medihal-00459235>
  • Bernard Offmann. TP de Biochimie (Enzymologie). Photography. Terre Sainte, France. 2009. <medihal-00459245>
  • Bernard Offmann. TP de Biochimie (Enzymologie). Photography. Terre Sainte, France. 2009. <medihal-00459246>
  • Bernard Offmann. TP de Biochimie (Enzymologie). Photography. Terre Sainte, France. 2009. <medihal-00459247>
  • Bernard Offmann. TP de Biochimie (Enzymologie). Photography. Terre Sainte, France. 2009. <medihal-00459249>

Chapitre d'ouvrage1 document

  • L. S. Swapna, Bernard Offmann, Narayanaswamy Srinivasan. Evolutionary dynamics of protein-protein interactions. A case study using the DJ-1/PfpI family of enzyme. Hu, Xiaohua and Pan, Yi. Knowledge Discovery in Bioinformatics: Techniques, Methods, and Applications, John Wiley & Sons, pp.210--237, 2007, 9780470124635. <hal-01198477>

Communication dans un congrès2 documents

  • Bernard Offmann, M. Tyagi, A. Joseph, M. Drula, M. Grondin, et al.. PB-PENTAdb : a web resource for the analysis and prediction of local backbone structure and flexibility using pentapeptide protein blocks. 9th European Congress on Computation Biology (ECCB10), Sep 2010, Ghent, Belgium. 2010. <hal-01198468>
  • Malini Manoharan, Matthieu Ng Fuk Chong, Aurore Vaitinadapoule, E. Frumence, Ramanathan Sowdhamini, et al.. Identification and characterisation of novel atypical odorant binding proteins in the mosquito genomes. 9th European Congress on Computation Biology (ECCB10), Sep 2010, Ghent, Belgium. 2010. <hal-01198469>