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Bio++ : Efficient Extensible Libraries and Tools for Computational Molecular Evolution

 Laurent Gueguen , Sylvain Gaillard , Bastien Boussau , Manolo Gouy , Mathieu Groussin , et al.
Molecular Biology and Evolution, 2013, 30 (8), pp.1745 - 1750. ⟨10.1093/molbev/mst097⟩
Article dans une revue hal-01209906v1

Overestimation of the adaptive substitution rate in fluctuating populations

 Marjolaine Rousselle , Maeva Mollion , Benoit Nabholz , Thomas Bataillon , Nicolas Galtier
Biology Letters, 2018, 14 (5), ⟨10.1098/rsbl.2018.0055⟩
Article dans une revue hal-01899015v1
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Incomplete lineage sorting explains the low performance of DNA barcoding in a radiation of four species of Western European grasshoppers (Orthoptera: Acrididae: Chorthippus )

 Benoit Nabholz
Biological Journal of the Linnean Society, 2023, ⟨10.1093/biolinnean/blad106⟩
Article dans une revue hal-04192161v1
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Life History Traits, Protein Evolution, and the Nearly Neutral Theory in Amniotes

 Emeric Figuet , Benoit Nabholz , Manon Bonneau , Eduard Mas Carrio , Krystyna Nadachowska-Brzyska , et al.
Molecular Biology and Evolution, 2016, 33 (6), pp.1517 - 1527. ⟨10.1093/molbev/msw033⟩
Article dans une revue hal-01900644v1

A bird’s white-eye view on neosex chromosome evolution

 Thibault Leroy , Yoann Anselmetti , Marie-Ka Tilak , Sèverine Bérard , Laura Csukonyi , et al.
2019, ⟨10.1101/505610⟩
Autre publication scientifique hal-02155307v1
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Colonisation of subterranean ecosystems leads to larger genome in waterlouse (Aselloidea)

 Benoit Nabholz , Jochen B W Wolf
Peer Community In Evolutionary Biology, 2017, pp.100029. ⟨10.24072/pci.evolbiol.100029⟩
Article dans une revue hal-01585042v1
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Reference-Free Population Genomics from Next- Generation Transcriptome Data and the Vertebrate- Invertebrate Gap

 Philippe Gayral , José Melo-Ferreira , Sylvain Glémin , Nicolas Bierne , Miguel Carneiro , et al.
PLoS Genetics, 2013, 9 (4), pp.e1003457. ⟨10.1371/journal.pgen.1003457⟩
Article dans une revue hal-00866204v1
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Hidden in plain sight: unveiling the distributions of green‐winged grasshoppers ( Aiolopus spp.) with citizen‐science data

 M. Pélissié , Benoit Nabholz , R. Labadessa , Leonardo Ancillotto
Journal of Zoology, In press, ⟨10.1111/jzo.13086⟩
Article dans une revue hal-04118612v1
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Reconstructing the Phylogenetic History of Long-Term Effective Population Size and Life-History Traits Using Patterns of Amino Acid Replacement in Mitochondrial Genomes of Mammals and Birds

 Benoit Nabholz , Nicole Uwimana , Nicolas Lartillot
Genome Biology and Evolution, 2013, 5 (7), pp.1273 - 1290. ⟨10.1093/gbe/evt083⟩
Article dans une revue hal-01919716v1
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La diversité génétique des plantes cultivées à l'heure de l'informatique génétique à haut débit: génomique comparative de la domestication

 Jacques David , Sylvain Glémin , Gautier Sarah , Benoit Nabholz , Francois Sabot , et al.
Sélectionneur Français, 2016, 67, pp.3-13
Article dans une revue hal-01607736v1

Comparative population genomics in animals uncovers the determinants of genetic diversity

 Jonathan Romiguier , P Gayral , M Ballenghien , Arnaud Bernard , V Cahais , et al.
Nature, 2014, 515 (7526), pp.261-263. ⟨10.1038/nature13685⟩
Article dans une revue hal-01313724v1
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The study of domestication reveals a loss of diversity, signature of selection and transcriptional modifications in tomato (Solanum lycopersicum)

 Christopher Sauvage , Benoit Nabholz , S. Gautier , M. Ruiz , Mathilde M. Causse , et al.
XVIIIth Eucarpia Meeting, Vegetable section, Tomato Working group, Apr 2014, Avignon, France. 1 p
Communication dans un congrès hal-02794508v1
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Influence of Recombination and GC-biased Gene Conversion on the Adaptive and Nonadaptive Substitution Rate in Mammals versus Birds

 Marjolaine Rousselle , Alexandre Laverré , Emeric Figuet , Benoit Nabholz , Nicolas Galtier
Molecular Biology and Evolution, 2019, ⟨10.1093/molbev/msy243⟩
Article dans une revue hal-02364582v1
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Avian Genomes Revisited: Hidden Genes Uncovered and the Rates versus Traits Paradox in Birds

 Fidel Botero-Castro , Emeric Figuet , Marie-Ka Tilak , Nicolas Galtier , Benoit Nabholz
Molecular Biology and Evolution, 2017, 34 (12), pp.3123 - 3131. ⟨10.1093/molbev/msx236⟩
Article dans une revue hal-01815353v1
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Illumina Library Preparation for Sequencing the GC-Rich Fraction of Heterogeneous Genomic DNA

 Marie-Ka Tilak , Fidel Botero-Castro , Nicolas Galtier , Benoit Nabholz
Genome Biology and Evolution, 2018, 10 (2), pp.616-622. ⟨10.1093/gbe/evy022⟩
Article dans une revue hal-01814697v1
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The Bimodal Distribution of Genic GC Content Is Ancestral to Monocot Species

 Yves Clément , Margaux-Alison Fustier , Benoit Nabholz , Sylvain Glemin
Genome Biology and Evolution, 2015, 7 (1), pp.336-348. ⟨10.1093/gbe/evu278⟩
Article dans une revue hal-01815496v1
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Genomics, population divergence and historical demography of the world’s largest and endangered butterfly, the Queen Alexandra’s birdwing

 Eliette L Reboud , Benoit Nabholz , Emmanuelle Chevalier , Marie-Ka Tilak , Darren Bito , et al.
Genome Biology and Evolution, 2023, 15 (4), pp.evad040. ⟨10.1093/gbe/evad040⟩
Article dans une revue hal-04050092v2
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Response to Kratochvíl and Rovatsos

 Benoit Nabholz , Thibault Leroy
Current Biology - CB, 2022, 32 (1), pp.R30-R31. ⟨10.1016/j.cub.2021.11.067⟩
Article dans une revue hal-03521111v1
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Is adaptation limited by mutation? A timescale-dependent effect of genetic diversity on the adaptive substitution rate in animals

 Marjolaine Rousselle , Paul Simion , Marie-Ka Tilak , Emeric Figuet , Benoit Nabholz , et al.
PLoS Genetics, 2020, 16 (4), pp.e1008668. ⟨10.1371/journal.pgen.1008668⟩
Article dans une revue hal-02955313v1
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Whole genome shotgun phylogenomics resolves the pattern and timing of swallowtail butterfly evolution

 Rémi Allio , Celine Scornavacca , Benoit Nabholz , Anne-Laure Clamens , Felix A. H. Sperling , et al.
Systematic Biology, 2020, 69 (1), pp.38-60. ⟨10.1093/sysbio/syz030⟩
Article dans une revue hal-02125214v1

The genome of a songbird

 Wesley C. Warren , David F. Clayton , Hans Ellegren , Arthur P. Arnold , Ladeana W. Hillier , et al.
Nature, 2010, 464 (7289), pp.757-762. ⟨10.1038/nature08819⟩
Article dans une revue hal-02666891v1
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A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives

 Gautier Sarah , Félix Homa , Stéphanie Pointet , Sandy Contreras , François Sabot , et al.
Molecular Ecology Resources, 2017, 17 (3), pp.565-580. ⟨10.1111/1755-0998.12587⟩
Article dans une revue hal-01930391v1
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Molecular evolution of genes in avian genomes

 Ki Woong Nam , Carina Mugal , Benoit Nabholz , Holger Schielzeth , Jochen B W Wolf , et al.
Genome Biology, 2010, 11 (6), 17 p. ⟨10.1186/gb-2010-11-6-r68⟩
Article dans une revue hal-02659829v1
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Strong Variations of Mitochondrial Mutation Rate across Mammals--the Longevity Hypothesis

 Benoit Nabholz , Sylvain Glémin , Nicolas Galtier
Molecular Biology and Evolution, 2008, 25 (1), pp.120-130. ⟨10.1093/molbev/msm248⟩
Article dans une revue hal-03327979v1
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Phylogenomic analyses data of the avian phylogenomics project

 Erich Jarvis , Siavash Mirarab , Andre J Aberer , Bo Li , Peter Houde , et al.
GigaScience, 2015, 4 (1), pp.1-9. ⟨10.1186/s13742-014-0038-1⟩
Article dans une revue hal-01919658v1
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Body mass-corrected molecular rate for bird mitochondrial DNA

 Benoit Nabholz , Robert Lanfear , Jérome Fuchs
Molecular Ecology, 2016, 25 (18), pp.4438 - 4449. ⟨10.1111/mec.13780⟩
Article dans une revue hal-01387904v1

Within-island diversification in a passerine bird

 Maëva Gabrielli , Benoit Nabholz , Thibault Leroy , Borja Milá , Christophe Thébaud
Proceedings of the Royal Society B: Biological Sciences, 2020, 287 (1923), pp.20192999. ⟨10.1098/rspb.2019.2999⟩
Article dans une revue hal-02965034v1

A macroevolutionary and genomic approach to studying insect-plant interactions

 Fabien L. Condamine , R. Allio , Benoit Nabholz , Anne Laure Clamens , Stephan Wanke , et al.
Séminaires scientifiques du Muséum d’Histoire Naturelle de Genève, May 2019, Genève, Switzerland
Communication dans un congrès hal-02786160v1
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Genome-wide macroevolutionary signatures of key innovations in butterflies colonizing new host plants

 Rémi Allio , Benoit Nabholz , Stefan Wanke , Guillaume Chomicki , Oscar A. Pérez-Escobar , et al.
Nature Communications, 2021, 12, pp.354. ⟨10.1038/s41467-020-20507-3⟩
Article dans une revue hal-03143738v1
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Genome-wide analysis in chicken reveals that local levels of genetic diversity are mainly governed by the rate of recombination

 Carina F Mugal , Benoit Nabholz , Hans Ellegren
BMC Genomics, 2013, ⟨10.1186/1471-2164-14-86⟩
Article dans une revue hal-01919701v1
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