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Number of documents

31

Benoit Ballester


Journal articles30 documents

  • Oriol Fornés, Jaime Castro-Mondragon, Aziz Khan, Robin van der Lee, Xi Zhang, et al.. JASPAR 2020: update of the open-access database of transcription factor binding profiles.. Nucleic Acids Research, Oxford University Press, 2020, 48 (D1), pp.D87-D92. ⟨10.1093/nar/gkz1001⟩. ⟨hal-02365013⟩
  • Giovanna Ambrosini, Ilya Vorontsov, Dmitry Penzar, Romain Groux, Oriol Fornés, et al.. Insights gained from a comprehensive all- against-all transcription factor binding motif benchmarking study. Genome Biology, BioMed Central, 2020, 21 (1), ⟨10.1186/s13059-020-01996-3⟩. ⟨hal-02773294⟩
  • Ildem Akerman, Bahar Kasaai, Alina Bazarova, Pau Sang, Isabelle Peiffer, et al.. A predictable conserved DNA base composition signature defines human core DNA replication origins. Nature Communications, Nature Publishing Group, 2020, ⟨10.1038/s41467-020-18527-0⟩. ⟨hal-02945610⟩
  • Marius Gheorghe, Geir Kjetil Sandve, Aziz Khan, Jeanne Chèneby, Benoit Ballester, et al.. A map of direct TF–DNA interactions in the human genome. Nucleic Acids Research, Oxford University Press, 2019, 47 (14), pp.7715-7715. ⟨10.1093/nar/gkz582⟩. ⟨hal-02531478⟩
  • Marius Gheorghe, Geir Kjetil Sandve, Aziz Khan, Jeanne Chèneby, Benoit Ballester, et al.. A map of direct TF–DNA interactions in the human genome. Nucleic Acids Research, Oxford University Press, 2019, ⟨10.1093/nar/gky1210⟩. ⟨hal-01980383⟩
  • Jeanne Chèneby, Zacharie Ménétrier, Martin Mestdagh, Thomas Rosnet, Allyssa Douida, et al.. ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments. Nucleic Acids Research, Oxford University Press, 2019, ⟨10.1093/nar/gkz945⟩. ⟨hal-02351736⟩
  • Paulina Prorok, Marie Artufel, Antoine Aze, Philippe Coulombe, Isabelle Peiffer, et al.. Involvement of G-quadruplex regions in mammalian replication origin activity. Nature Communications, Nature Publishing Group, 2019, 10 (1), ⟨10.1038/s41467-019-11104-0⟩. ⟨hal-02194008⟩
  • Aziz Khan, Oriol Fornés, Arnaud Stigliani, Marius Gheorghe, Jaime A. Castro-Mondragon, et al.. JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Research, Oxford University Press, 2018, 46 (D1), pp.D260-D266. ⟨10.1093/nar/gkx1126⟩. ⟨hal-01646126⟩
  • Jeanne Chèneby, Marius Gheorghe, Marie Artufel, Anthony Mathelier, Benoit Ballester. ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments. Nucleic Acids Research, Oxford University Press, 2018, 46 (D1), pp.D267-D275. ⟨10.1093/nar/gkx1092⟩. ⟨hal-01646201⟩
  • Robin Van der lee, Benoit Ballester, François Parcy, Aziz Khan, Oriol Fornés, et al.. JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Research, Oxford University Press, 2018, 46 (D1), pp.D1284-D1284. ⟨10.1093/nar/gkx1188⟩. ⟨hal-01980416⟩
  • C. Cayrou, B Ballester, Isabelle Peiffer, Romain Fenouil, Philippe Coulombe, et al.. The chromatin environment shapes DNA replication origin organization and defines origin classes. Genome Research, Cold Spring Harbor Laboratory Press, 2015, 25 (12), pp.1873-1885. ⟨10.1101/gr.192799.115⟩. ⟨hal-01240797⟩
  • Aurélien Griffon, Quentin Barbier, Jordi Dalino, Jacques van Helden, Salvatore Spicuglia, et al.. Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape. Nucleic Acids Research, Oxford University Press, 2015, 43 (e27), ⟨10.1093/nar/gku1280⟩. ⟨hal-01219379⟩
  • Laurent Vanhille, Aurélien Griffon, Muhammad Ahmad Maqbool, Joaquin Zacarias-Cabeza, Lan T.M. Dao, et al.. High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq. Nature Communications, Nature Publishing Group, 2015, 6, pp.6905. ⟨10.1038/ncomms7905⟩. ⟨hal-01614948⟩
  • Benoit Ballester, Alejandra Medina-Rivera, Dominic Schmidt, Mar Gonzàlez-Porta, Matthew Carlucci, et al.. Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways. eLife, eLife Sciences Publication, 2014, 462, pp.e02626. ⟨10.7554/eLife.02626.031⟩. ⟨hal-01455448⟩
  • Daniil Alpern, Diana Langer, Benoit Ballester, Stephanie Le Gras, Christophe Romier, et al.. TAF4, a subunit of transcription factor II D, directs promoter occupancy of nuclear receptor HNF4A during post-natal hepatocyte differentiation. eLife, eLife Sciences Publication, 2014, 3, pp.308-312. ⟨10.7554/eLife.03613.001⟩. ⟨hal-01404987⟩
  • Alister P W Funnell, Michael D Wilson, Benoit Ballester, Ka Sin Mak, Jon Burdach, et al.. A CpG mutational hotspot in a ONECUT binding site accounts for the prevalent variant of hemophilia B Leyden.. American Journal of Human Genetics, Elsevier (Cell Press), 2013, 92 (3), pp.460--467. ⟨hal-01615153⟩
  • Dominic Schmidt, Petra C Schwalie, Michael D Wilson, Benoit Ballester, Angela Goncalves, et al.. Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages. Cell, Elsevier, 2012, 148 (1-2), pp.335--348. ⟨hal-01615154⟩
  • Delphine Rolland, Ali Bouamrani, Rémi Houlgatte, Aurélie Barbarat, Claire Ramus, et al.. Identification of proteomic signatures of mantle cell lymphoma, small lymphocytic lymphoma, and marginal zone lymphoma biopsies by surface enhanced laser desorption/ionization-time of flight mass spectrometry.. Leukemia & lymphoma, Taylor & Francis, 2011, 52 (4), pp.648--658. ⟨hal-01615155⟩
  • Dominic Schmidt, Michael D Wilson, Benoit Ballester, Petra C Schwalie, Gordon D Brown, et al.. Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding. Science (New York, NY), 2010, 328 (5981), pp.1036--1040. ⟨hal-01615156⟩
  • Benoit Ballester, Nathan Johnson, Glenn Proctor, Paul Flicek. Consistent annotation of gene expression arrays. BMC Genomics, BioMed Central, 2010, 11, pp.294. ⟨hal-01615157⟩
  • Nathan Johnson, Andreas Kähäri, Damian Keefe, Stephen Keenan, Rhoda Kinsella, et al.. Ensembl's 10th year.. Nucleic Acids Research, Oxford University Press, 2010, 38 (Database issue), pp.D557--62. ⟨hal-01615158⟩
  • Damian Smedley, Syed Haider, Benoit Ballester, Richard Holland, Darin London, et al.. BioMart―biological queries made easy. BMC Genomics, BioMed Central, 2009, 10 (1), pp.22. ⟨10.1186/1471-2164-10-22⟩. ⟨hal-01615162⟩
  • Mark Carlile, Daniel Swan, Kelly Jackson, Keziah Preston-Fayers, Benoit Ballester, et al.. Strand selective generation of endo-siRNAs from the Na/phosphate transporter gene Slc34a1 in murine tissues.. Nucleic Acids Research, Oxford University Press, 2009, 37 (7), pp.2274--2282. ⟨hal-01615161⟩
  • Syed Haider, Benoit Ballester, Damian Smedley, Junjun Zhang, Peter Rice, et al.. BioMart Central Portal―unified access to biological data.. Nucleic Acids Research, Oxford University Press, 2009, 37 (Web Server issue), pp.W23--7. ⟨hal-01615159⟩
  • T J P Hubbard, B L Aken, S Ayling, Benoit Ballester, K Beal, et al.. Ensembl 2009.. Nucleic Acids Research, Oxford University Press, 2009, 37 (Database issue), pp.D690--7. ⟨hal-01615160⟩
  • P. Flicek, B. Aken, K. Beal, Benoit Ballester, M. Caccamo, et al.. Ensembl 2008. Nucleic Acids Research, Oxford University Press, 2007, 36 (Database), pp.D707 - D714. ⟨10.1093/nar/gkm988⟩. ⟨hal-01626053⟩
  • B Ballester, O Ramuz, C Gisselbrecht, G Doucet, L Loi, et al.. Gene expression profiling identifies molecular subgroups among nodal peripheral T-cell lymphomas. Oncogene, Nature Publishing Group, 2006, 25 (10), pp.1560-1570. ⟨10.1038/sj.onc.1209178⟩. ⟨hal-01612147⟩
  • T J P Hubbard, B L Aken, K Beal, Benoit Ballester, M Caccamo, et al.. Ensembl 2007.. Nucleic Acids Research, Oxford University Press, 2006, 35 (Database issue), pp.D610--7. ⟨hal-01615163⟩
  • O Baris, D Mirebeau-Prunier, F Savagner, P Rodien, B Ballester, et al.. Gene profiling reveals specific oncogenic mechanisms and signaling pathways in oncocytic and papillary thyroid carcinoma. Oncogene, Nature Publishing Group, 2005, 24 (25), pp.4155-4161. ⟨10.1038/sj.onc.1208578⟩. ⟨hal-01612148⟩
  • Catherine Laporte, Benoit Ballester, Charles Mary, Shozo Izui, Luc Reininger. The Sgp3 locus on mouse chromosome 13 regulates nephritogenic gp70 autoantigen expression and predisposes to autoimmunity. Journal of Immunology, Publisher : Baltimore : Williams & Wilkins, c1950-. Latest Publisher : Bethesda, MD : American Association of Immunologists, 2003, 171 (7), pp.3872--3877. ⟨hal-01615164⟩

Conference papers1 document

  • Irina Murgan, Cornel Ioana, Ion Candel, Andrei Anghel, Jean-Louis Ballester, et al.. (A new time of flight) Acoustic flow meter using wide band signals and adaptive beamforming techniques. 28th IAHR symposium on Hydraulic Machinery and Systems (IAHR2016), Jul 2016, Grenoble, France. ⟨10.1088/1755-1315/49/6/062002⟩. ⟨hal-01441791⟩